Wall clock time and date at job start Tue Mar 31 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81394 * 103.00110 * 2 1 4 4 C 1.53000 * 109.47394 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47089 * 305.00215 * 4 3 2 6 6 C 1.52993 * 109.47512 * 184.99840 * 4 3 2 7 7 N 1.46500 * 109.46911 * 64.99846 * 4 3 2 8 8 C 1.34780 * 120.00227 * 180.02562 * 7 4 3 9 9 O 1.21592 * 119.99705 * 359.97438 * 8 7 4 10 10 C 1.47642 * 120.00140 * 180.02562 * 8 7 4 11 11 C 1.40014 * 119.89289 * 179.97438 * 10 8 7 12 12 C 1.36314 * 120.10542 * 180.27327 * 11 10 8 13 13 C 1.40892 * 119.89099 * 359.50150 * 12 11 10 14 14 C 1.41107 * 120.10345 * 180.22549 * 13 12 11 15 15 H 1.07997 * 120.00225 * 205.24410 * 14 13 12 16 16 C 1.40226 * 119.99908 * 25.24987 * 14 13 12 17 17 N 1.30649 * 120.00094 * 17.90569 * 16 14 13 18 18 Si 1.86800 * 119.99925 * 197.90839 * 16 14 13 19 19 H 1.48509 * 109.47112 * 94.52575 * 18 16 14 20 20 H 1.48494 * 109.47261 * 214.52265 * 18 16 14 21 21 H 1.48498 * 109.47411 * 334.52525 * 18 16 14 22 22 C 1.40890 * 119.79342 * 0.50234 * 13 12 11 23 23 C 1.36319 * 119.89196 * 359.74472 * 22 13 12 24 24 H 1.09000 * 109.47025 * 59.99561 * 1 2 3 25 25 H 1.08996 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46978 * 300.00262 * 1 2 3 27 27 H 1.09002 * 109.47348 * 59.99913 * 3 2 1 28 28 H 1.09001 * 109.47427 * 300.00133 * 3 2 1 29 29 H 1.08994 * 109.47367 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47092 * 299.99789 * 5 4 3 31 31 H 1.09002 * 109.47422 * 59.99274 * 5 4 3 32 32 H 1.09004 * 109.47357 * 300.00124 * 6 4 3 33 33 H 1.08998 * 109.47312 * 60.00041 * 6 4 3 34 34 H 1.08998 * 109.47515 * 180.02562 * 6 4 3 35 35 H 0.97005 * 120.00362 * 359.97438 * 7 4 3 36 36 H 1.07995 * 119.94885 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.05928 * 179.74637 * 12 11 10 38 38 H 0.96994 * 119.99882 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.05447 * 179.73521 * 22 13 12 40 40 H 1.07993 * 119.94874 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.3419 1.1754 1.1826 6 6 4.0872 3.4252 0.1263 7 7 4.2939 1.4148 -1.2509 8 6 5.6224 1.4602 -1.4734 9 8 6.3632 1.9375 -0.6355 10 6 6.1782 0.9315 -2.7349 11 6 7.5586 0.9803 -2.9639 12 6 8.0758 0.4985 -4.1294 13 6 7.2199 -0.0588 -5.1000 14 6 7.7510 -0.5633 -6.3061 15 1 7.1333 -0.6089 -7.1908 16 6 9.0808 -1.0054 -6.3559 17 7 9.7187 -1.2832 -5.2500 18 14 9.9402 -1.1972 -8.0033 19 1 10.7019 0.0399 -8.3112 20 1 10.8732 -2.3509 -7.9436 21 1 8.9289 -1.4329 -9.0648 22 6 5.8315 -0.1056 -4.8650 23 6 5.3231 0.3833 -3.6985 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 5.4249 1.2979 1.1828 30 1 3.9315 1.5661 2.1137 31 1 4.0962 0.1172 1.0931 32 1 3.6601 3.9699 -0.7157 33 1 3.6768 3.8159 1.0575 34 1 5.1702 3.5481 0.1263 35 1 3.7030 1.0337 -1.9192 36 1 8.2143 1.4040 -2.2176 37 1 9.1403 0.5403 -4.3070 38 1 10.6386 -1.5887 -5.2845 39 1 5.1712 -0.5280 -5.6079 40 1 4.2590 0.3482 -3.5177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890874194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:17 Heat of formation + Delta-G solvation = -31.894644 kcal Electronic energy + Delta-G solvation = -20929.970183 eV Core-core repulsion = 17835.039465 eV Total energy + Delta-G solvation = -3094.930718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.57041 -37.42658 -35.87840 -33.85460 -31.75033 -29.92526 -29.33932 -29.17496 -27.46584 -27.09007 -25.82279 -22.33225 -21.10437 -20.06928 -19.04116 -17.48282 -17.15200 -16.26956 -15.52615 -15.30573 -14.67290 -14.26848 -14.03937 -13.94409 -13.82051 -13.79330 -13.27162 -13.03139 -12.81493 -12.71833 -12.20856 -12.09649 -11.92356 -11.76921 -11.59251 -11.37421 -11.22951 -11.15352 -10.96436 -10.85925 -10.57876 -10.02520 -9.98420 -9.49299 -9.30701 -8.76683 -8.55109 -7.76334 -7.65416 -7.51959 -6.98457 -4.56369 1.50147 2.28207 2.44742 2.94178 2.98404 3.01261 3.07494 3.74127 3.77394 3.92062 4.53871 4.60777 4.85737 4.92063 4.95221 5.17059 5.28337 5.47005 5.49052 5.62250 5.73783 5.81701 5.98470 6.05847 6.13456 6.19263 6.33285 6.46907 6.60301 6.84441 6.88270 7.06264 7.11011 7.15396 7.48201 7.66585 7.83380 7.92230 8.09863 8.32513 8.47136 8.67064 8.79723 9.14808 9.93894 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.003422 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.581883 B = 8179.281106 C = 8836.807634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.238 6.238 3 C -0.092 4.092 4 C 0.195 3.805 5 C -0.164 4.164 6 C -0.159 4.159 7 N -0.733 5.733 8 C 0.576 3.424 9 O -0.569 6.569 10 C -0.282 4.282 11 C -0.036 4.036 12 C -0.183 4.183 13 C 0.129 3.871 14 C -0.445 4.445 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.770 5.770 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.235 4.235 23 C -0.048 4.048 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.398 0.602 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.287 0.713 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 3.680 6.759 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S -0.012 6.012 3 C -0.241 4.241 4 C 0.108 3.892 5 C -0.222 4.222 6 C -0.219 4.219 7 N -0.387 5.387 8 C 0.371 3.629 9 O -0.451 6.451 10 C -0.286 4.286 11 C -0.055 4.055 12 C -0.202 4.202 13 C 0.126 3.874 14 C -0.473 4.473 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.393 5.393 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.255 4.255 23 C -0.067 4.067 24 H 0.093 0.907 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.234 0.766 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.536 3.029 7.451 14.063 hybrid contribution -0.905 0.604 -1.014 1.487 sum -12.441 3.633 6.437 14.471 Atomic orbital electron populations 1.23440 0.95706 1.06392 1.04596 1.87316 1.05590 1.10445 1.97871 1.23859 0.99499 0.95237 1.05508 1.19858 0.88456 0.94590 0.86346 1.22271 1.03740 1.00313 0.95908 1.22235 1.04970 0.93673 1.01002 1.46078 1.08366 1.64865 1.19373 1.18511 0.80627 0.76878 0.86857 1.90565 1.59021 1.48140 1.47416 1.18931 0.94480 1.18902 0.96337 1.20468 0.92988 0.95843 0.96202 1.20991 1.00117 1.03958 0.95139 1.17780 0.91020 0.86491 0.92128 1.19836 0.95894 1.34481 0.97105 0.89781 1.26095 0.97468 0.92641 0.98521 1.69755 1.11966 1.28309 1.29260 0.86211 0.79523 0.78867 0.81727 1.19018 1.20010 1.18292 1.20667 0.95662 1.10756 0.98367 1.20379 0.96346 0.96093 0.93905 0.90671 0.88180 0.90772 0.88958 0.89632 0.89765 0.92497 0.91668 0.92793 0.92395 0.89300 0.76573 0.88209 0.86317 0.90220 0.88560 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 10.76 101.05 1.09 0.03 16 2 S -0.24 -2.77 20.16 -107.50 -2.17 -4.94 16 3 C -0.09 -0.99 4.98 37.16 0.18 -0.81 16 4 C 0.20 2.70 0.75 -131.82 -0.10 2.60 16 5 C -0.16 -2.40 8.08 37.16 0.30 -2.10 16 6 C -0.16 -2.13 8.40 37.15 0.31 -1.82 16 7 N -0.73 -12.18 4.83 -48.60 -0.23 -12.41 16 8 C 0.58 12.04 7.18 -12.42 -0.09 11.95 16 9 O -0.57 -12.96 12.53 5.28 0.07 -12.90 16 10 C -0.28 -6.47 5.89 -104.73 -0.62 -7.09 16 11 C -0.04 -0.88 9.52 -39.61 -0.38 -1.25 16 12 C -0.18 -4.71 8.63 -39.27 -0.34 -5.05 16 13 C 0.13 3.32 5.57 -106.80 -0.59 2.72 16 14 C -0.45 -11.19 9.04 -37.75 -0.34 -11.53 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.77 5.13 -17.31 -0.09 1.68 16 17 N -0.77 -19.04 11.00 55.56 0.61 -18.43 16 18 Si 0.91 17.58 29.60 -169.99 -5.03 12.55 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 16 23 C -0.05 -1.04 9.47 -39.61 -0.38 -1.42 16 24 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.08 1.48 6.16 -51.93 -0.32 1.16 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.47 6.16 -51.93 -0.32 1.15 16 35 H 0.40 6.18 6.22 -40.82 -0.25 5.93 16 36 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 37 H 0.12 3.13 6.20 -52.49 -0.33 2.80 16 38 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 39 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.09 1.62 6.37 -52.49 -0.33 1.29 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -27.91 337.42 -8.75 -36.66 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.66 Total: 12.36 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -1.42 Total: -17.97 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.38 Total: -30.84 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.17 Total: -4.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.91 -8.75 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890874194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.767 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds