Wall clock time and date at job start Tue Mar 31 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81394 * 103.00110 * 2 1 4 4 C 1.53000 * 109.47394 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47089 * 305.00215 * 4 3 2 6 6 C 1.52993 * 109.47512 * 184.99840 * 4 3 2 7 7 N 1.46500 * 109.46911 * 64.99846 * 4 3 2 8 8 C 1.34780 * 120.00227 * 180.02562 * 7 4 3 9 9 O 1.21592 * 119.99705 * 359.97438 * 8 7 4 10 10 C 1.47642 * 120.00140 * 180.02562 * 8 7 4 11 11 C 1.40014 * 119.89289 * 179.97438 * 10 8 7 12 12 C 1.36314 * 120.10542 * 180.27327 * 11 10 8 13 13 C 1.40892 * 119.89099 * 359.50150 * 12 11 10 14 14 C 1.41107 * 120.10345 * 180.22549 * 13 12 11 15 15 H 1.07997 * 120.00225 * 205.24410 * 14 13 12 16 16 C 1.40226 * 119.99908 * 25.24987 * 14 13 12 17 17 N 1.30649 * 120.00094 * 17.90569 * 16 14 13 18 18 Si 1.86800 * 119.99925 * 197.90839 * 16 14 13 19 19 H 1.48509 * 109.47112 * 94.52575 * 18 16 14 20 20 H 1.48494 * 109.47261 * 214.52265 * 18 16 14 21 21 H 1.48498 * 109.47411 * 334.52525 * 18 16 14 22 22 C 1.40890 * 119.79342 * 0.50234 * 13 12 11 23 23 C 1.36319 * 119.89196 * 359.74472 * 22 13 12 24 24 H 1.09000 * 109.47025 * 59.99561 * 1 2 3 25 25 H 1.08996 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46978 * 300.00262 * 1 2 3 27 27 H 1.09002 * 109.47348 * 59.99913 * 3 2 1 28 28 H 1.09001 * 109.47427 * 300.00133 * 3 2 1 29 29 H 1.08994 * 109.47367 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47092 * 299.99789 * 5 4 3 31 31 H 1.09002 * 109.47422 * 59.99274 * 5 4 3 32 32 H 1.09004 * 109.47357 * 300.00124 * 6 4 3 33 33 H 1.08998 * 109.47312 * 60.00041 * 6 4 3 34 34 H 1.08998 * 109.47515 * 180.02562 * 6 4 3 35 35 H 0.97005 * 120.00362 * 359.97438 * 7 4 3 36 36 H 1.07995 * 119.94885 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.05928 * 179.74637 * 12 11 10 38 38 H 0.96994 * 119.99882 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.05447 * 179.73521 * 22 13 12 40 40 H 1.07993 * 119.94874 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.3419 1.1754 1.1826 6 6 4.0872 3.4252 0.1263 7 7 4.2939 1.4148 -1.2509 8 6 5.6224 1.4602 -1.4734 9 8 6.3632 1.9375 -0.6355 10 6 6.1782 0.9315 -2.7349 11 6 7.5586 0.9803 -2.9639 12 6 8.0758 0.4985 -4.1294 13 6 7.2199 -0.0588 -5.1000 14 6 7.7510 -0.5633 -6.3061 15 1 7.1333 -0.6089 -7.1908 16 6 9.0808 -1.0054 -6.3559 17 7 9.7187 -1.2832 -5.2500 18 14 9.9402 -1.1972 -8.0033 19 1 10.7019 0.0399 -8.3112 20 1 10.8732 -2.3509 -7.9436 21 1 8.9289 -1.4329 -9.0648 22 6 5.8315 -0.1056 -4.8650 23 6 5.3231 0.3833 -3.6985 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 5.4249 1.2979 1.1828 30 1 3.9315 1.5661 2.1137 31 1 4.0962 0.1172 1.0931 32 1 3.6601 3.9699 -0.7157 33 1 3.6768 3.8159 1.0575 34 1 5.1702 3.5481 0.1263 35 1 3.7030 1.0337 -1.9192 36 1 8.2143 1.4040 -2.2176 37 1 9.1403 0.5403 -4.3070 38 1 10.6386 -1.5887 -5.2845 39 1 5.1712 -0.5280 -5.6079 40 1 4.2590 0.3482 -3.5177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890874194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:16 Heat of formation + Delta-G solvation = -46.738298 kcal Electronic energy + Delta-G solvation = -20930.613852 eV Core-core repulsion = 17835.039465 eV Total energy + Delta-G solvation = -3095.574387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09651 -39.16446 -37.33083 -35.67208 -33.25681 -31.76393 -31.04457 -29.90334 -28.38494 -28.19483 -27.63742 -24.02650 -22.90280 -21.65940 -20.47188 -19.31151 -18.67556 -17.42978 -17.03403 -16.64729 -15.93463 -15.72450 -15.67859 -15.27541 -15.14001 -14.71047 -14.57788 -14.43808 -14.05528 -13.96352 -13.68860 -13.57466 -13.27941 -13.08909 -12.97160 -12.81877 -12.69652 -12.55268 -12.36367 -12.22464 -12.02455 -11.72512 -11.33640 -11.11953 -10.84713 -10.41925 -9.97514 -9.54987 -9.38863 -8.77731 -8.62816 -6.46835 0.47783 0.72159 1.16541 1.38267 1.43678 1.53942 1.71007 2.14764 2.20412 2.39123 2.82309 3.53360 3.71197 3.93103 4.09692 4.28176 4.36018 4.39835 4.40241 4.41196 4.42841 4.58318 4.76333 4.79203 4.93014 4.94499 4.95841 4.98665 5.03553 5.21622 5.27672 5.33946 5.40883 5.60752 5.73591 5.81100 5.98286 6.03711 6.22328 6.57520 6.78387 6.80032 6.91635 7.54222 8.17915 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.003422 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.581883 B = 8179.281106 C = 8836.807634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.302 6.302 3 C -0.075 4.075 4 C 0.188 3.812 5 C -0.159 4.159 6 C -0.155 4.155 7 N -0.716 5.716 8 C 0.576 3.424 9 O -0.593 6.593 10 C -0.292 4.292 11 C -0.049 4.049 12 C -0.203 4.203 13 C 0.101 3.899 14 C -0.475 4.475 15 H 0.091 0.909 16 C 0.034 3.966 17 N -0.805 5.805 18 Si 0.989 3.011 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.251 1.251 22 C -0.246 4.246 23 C -0.038 4.038 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.295 0.705 39 H 0.114 0.886 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.651 3.996 6.541 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.076 6.076 3 C -0.223 4.223 4 C 0.102 3.898 5 C -0.217 4.217 6 C -0.215 4.215 7 N -0.369 5.369 8 C 0.369 3.631 9 O -0.477 6.477 10 C -0.296 4.296 11 C -0.069 4.069 12 C -0.222 4.222 13 C 0.098 3.902 14 C -0.502 4.502 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.429 5.429 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.174 1.174 22 C -0.266 4.266 23 C -0.057 4.057 24 H 0.105 0.895 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.242 0.758 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.314 3.348 7.251 16.391 hybrid contribution -0.158 0.516 -0.807 0.971 sum -14.472 3.863 6.444 16.306 Atomic orbital electron populations 1.23463 0.91730 1.07254 1.05951 1.87577 1.10008 1.11952 1.98073 1.23730 0.96516 0.94517 1.07576 1.20095 0.90739 0.94566 0.84386 1.22195 1.01550 1.00254 0.97735 1.22172 1.02757 0.93460 1.03091 1.45955 1.06759 1.63661 1.20562 1.18263 0.82079 0.76867 0.85910 1.90568 1.60105 1.49108 1.47876 1.19264 0.94043 1.18525 0.97766 1.20540 0.94235 0.96265 0.95834 1.20917 0.99566 1.05559 0.96154 1.18132 0.92287 0.87152 0.92593 1.20142 0.97277 1.35562 0.97264 0.89089 1.27015 0.97611 0.91571 1.02282 1.69809 1.12671 1.28811 1.31597 0.85076 0.78308 0.78942 0.76776 1.18695 1.19155 1.17428 1.20930 0.95080 1.11052 0.99494 1.20674 0.98105 0.94301 0.92610 0.89534 0.87588 0.89165 0.86288 0.88125 0.93315 0.89797 0.92496 0.91897 0.89313 0.92918 0.75765 0.88991 0.87985 0.89436 0.86802 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 10.76 113.37 1.22 -0.20 16 2 S -0.30 -6.24 20.16 -56.49 -1.14 -7.38 16 3 C -0.08 -1.34 4.98 71.98 0.36 -0.98 16 4 C 0.19 4.83 0.75 3.60 0.00 4.83 16 5 C -0.16 -4.49 8.08 71.98 0.58 -3.91 16 6 C -0.16 -3.84 8.40 71.98 0.60 -3.24 16 7 N -0.72 -22.83 4.83 -425.94 -2.06 -24.88 16 8 C 0.58 24.15 7.18 86.73 0.62 24.77 16 9 O -0.59 -27.74 12.53 -4.00 -0.05 -27.79 16 10 C -0.29 -13.54 5.89 -19.93 -0.12 -13.66 16 11 C -0.05 -2.54 9.52 22.25 0.21 -2.33 16 12 C -0.20 -10.96 8.63 22.47 0.19 -10.76 16 13 C 0.10 5.36 5.57 -21.28 -0.12 5.24 16 14 C -0.48 -24.32 9.04 23.46 0.21 -24.11 16 15 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 16 C 0.03 1.62 5.13 85.35 0.44 2.06 16 17 N -0.81 -41.06 11.00 21.87 0.24 -40.82 16 18 Si 0.99 36.00 29.60 68.60 2.03 38.03 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 20 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 22 C -0.25 -11.51 9.73 22.47 0.22 -11.30 16 23 C -0.04 -1.62 9.47 22.25 0.21 -1.41 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.73 6.16 -2.39 -0.01 1.72 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.70 6.72 -2.39 -0.02 1.68 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.72 6.16 -2.39 -0.01 1.71 16 35 H 0.41 11.66 6.22 -92.70 -0.58 11.08 16 36 H 0.09 4.74 7.63 -2.91 -0.02 4.72 16 37 H 0.10 5.73 6.20 -2.91 -0.02 5.71 16 38 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.13 4.34 6.37 -2.91 -0.02 4.32 16 Total: -1.00 -63.66 337.42 4.13 -59.52 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.47 Total: 38.30 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.64 Total: -34.99 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -1.82 Total: -65.70 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.79 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: -6.24 SS G_CDS: -1.14 Total: -7.38 kcal Total: -63.66 4.13 -59.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890874194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.784 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds