Wall clock time and date at job start Tue Mar 31 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 102.99996 * 2 1 4 4 C 1.53004 * 109.46989 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46989 * 304.99446 * 4 3 2 6 6 C 1.52999 * 109.46983 * 184.99930 * 4 3 2 7 7 N 1.46494 * 109.47245 * 64.99960 * 4 3 2 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 4 3 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 4 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 4 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.09001 * 109.46864 * 299.99683 * 1 2 3 25 25 H 1.08997 * 109.47051 * 60.00195 * 1 2 3 26 26 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47531 * 59.99774 * 3 2 1 28 28 H 1.08999 * 109.47178 * 299.99917 * 3 2 1 29 29 H 1.08991 * 109.47058 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47259 * 300.00773 * 5 4 3 31 31 H 1.09004 * 109.46457 * 60.00310 * 5 4 3 32 32 H 1.08997 * 109.47399 * 299.99843 * 6 4 3 33 33 H 1.08999 * 109.47200 * 59.99838 * 6 4 3 34 34 H 1.09002 * 109.47048 * 179.97438 * 6 4 3 35 35 H 0.97004 * 120.00039 * 359.97438 * 7 4 3 36 36 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 37 37 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 -0.0006 5 6 4.3429 1.1752 1.1808 6 6 4.0872 3.4252 0.1251 7 7 4.2928 1.4150 -1.2527 8 6 5.6212 1.4605 -1.4762 9 8 6.3623 1.9374 -0.6391 10 6 6.1770 0.9302 -2.7399 11 6 5.3243 0.3806 -3.7036 12 6 5.8368 -0.1179 -4.8878 13 6 7.1918 -0.0788 -5.1323 14 6 8.0652 0.4703 -4.1748 15 6 9.4568 0.5125 -4.4231 16 1 9.8246 0.5066 -5.4385 17 6 10.3573 0.5617 -3.3531 18 7 9.9651 0.2225 -2.1520 19 14 12.1194 1.1116 -3.6398 20 1 12.2376 2.5639 -3.3527 21 1 13.0269 0.3539 -2.7411 22 1 12.4945 0.8544 -5.0534 23 6 7.5467 0.9773 -2.9712 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8032 2.2371 0.8899 28 1 1.8032 2.2371 -0.8900 29 1 5.4259 1.2976 1.1801 30 1 3.9332 1.5657 2.1123 31 1 4.0971 0.1170 1.0912 32 1 3.6595 3.9700 -0.7165 33 1 3.6776 3.8157 1.0566 34 1 5.1703 3.5480 0.1251 35 1 3.7014 1.0341 -1.9205 36 1 4.2602 0.3454 -3.5219 37 1 5.1703 -0.5397 -5.6255 38 1 7.5845 -0.4703 -6.0591 39 1 10.5894 0.2563 -1.4103 40 1 8.2081 1.4049 -2.2321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890876658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:21 Heat of formation + Delta-G solvation = -27.987038 kcal Electronic energy + Delta-G solvation = -21211.418375 eV Core-core repulsion = 18116.657104 eV Total energy + Delta-G solvation = -3094.761272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66003 -37.34740 -35.90280 -33.73354 -31.83758 -29.69376 -29.38137 -29.20638 -27.47275 -27.09157 -25.27751 -22.96090 -20.96830 -20.08918 -19.04387 -17.77668 -16.68153 -15.97407 -15.50386 -15.13464 -14.73666 -14.56507 -14.11872 -13.97762 -13.85061 -13.77345 -13.26376 -13.01497 -12.86772 -12.67559 -12.45309 -12.13191 -11.84040 -11.67783 -11.55188 -11.23021 -11.12058 -11.00144 -10.98161 -10.67364 -10.46165 -10.03306 -9.91768 -9.64899 -9.18923 -8.81655 -8.60157 -7.77216 -7.58620 -7.48022 -6.76915 -4.38080 1.49043 2.25937 2.43692 2.84615 3.09681 3.13147 3.18295 3.65600 3.91335 3.94722 4.51869 4.66875 4.84171 4.91196 4.94122 5.15562 5.26993 5.45904 5.48013 5.64868 5.66063 5.79781 5.97722 6.00963 6.12800 6.16994 6.33482 6.46293 6.61335 6.75526 6.98698 7.02896 7.07005 7.25094 7.42435 7.74880 7.81409 7.96852 8.16141 8.24297 8.54515 8.83773 8.87334 9.02801 10.17704 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023366 B = 0.003987 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.053657 B = 7021.899189 C = 7741.850429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.238 6.238 3 C -0.092 4.092 4 C 0.194 3.806 5 C -0.165 4.165 6 C -0.160 4.160 7 N -0.727 5.727 8 C 0.569 3.431 9 O -0.542 6.542 10 C -0.128 4.128 11 C -0.216 4.216 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.783 5.783 19 Si 0.910 3.090 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.092 4.092 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 2.636 4.791 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S -0.012 6.012 3 C -0.241 4.241 4 C 0.106 3.894 5 C -0.223 4.223 6 C -0.220 4.220 7 N -0.382 5.382 8 C 0.360 3.640 9 O -0.421 6.421 10 C -0.131 4.131 11 C -0.236 4.236 12 C -0.117 4.117 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.490 4.490 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.407 5.407 19 Si 0.734 3.266 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.112 4.112 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.413 2.057 5.650 14.699 hybrid contribution -0.579 0.943 -0.399 1.176 sum -13.992 2.999 5.251 15.243 Atomic orbital electron populations 1.23442 0.95710 1.06388 1.04600 1.87331 1.05576 1.10394 1.97872 1.23854 0.99362 0.95289 1.05582 1.19904 0.88588 0.94686 0.86184 1.22276 1.03826 1.00331 0.95884 1.22240 1.05026 0.93552 1.01153 1.46118 1.08234 1.64368 1.19483 1.18756 0.80908 0.77191 0.87147 1.90620 1.58852 1.45914 1.46707 1.19493 0.95122 1.05093 0.93418 1.20366 0.96526 1.10397 0.96285 1.20428 0.95067 1.00055 0.96111 1.21093 0.93106 1.07691 1.01321 1.17596 0.93329 0.88630 0.90863 1.19594 0.90552 1.44802 0.94073 0.90129 1.25953 1.01511 0.92523 0.94550 1.69799 1.37546 1.32351 1.01008 0.86275 0.81196 0.79649 0.79485 1.19246 1.20220 1.18565 1.21624 0.91836 0.98954 0.98797 0.90753 0.90682 0.88182 0.88856 0.89592 0.89687 0.92343 0.91593 0.92702 0.92226 0.89287 0.76277 0.89211 0.88974 0.88699 0.90504 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 10.76 101.05 1.09 0.05 16 2 S -0.24 -2.75 20.15 -107.50 -2.17 -4.92 16 3 C -0.09 -0.99 4.98 37.16 0.18 -0.80 16 4 C 0.19 2.71 0.75 -131.82 -0.10 2.61 16 5 C -0.16 -2.47 8.08 37.16 0.30 -2.17 16 6 C -0.16 -2.18 8.40 37.16 0.31 -1.87 16 7 N -0.73 -12.21 4.83 -48.53 -0.23 -12.44 16 8 C 0.57 12.27 7.19 -12.31 -0.09 12.18 16 9 O -0.54 -12.95 12.54 5.33 0.07 -12.88 16 10 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 11 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 12 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 13 C -0.21 -5.10 9.78 -38.81 -0.38 -5.48 16 14 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 15 C -0.46 -12.20 9.05 -37.73 -0.34 -12.55 16 16 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 17 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.78 -20.83 10.96 55.55 0.61 -20.23 16 19 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.09 -2.46 8.23 -38.44 -0.32 -2.78 16 24 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.08 1.55 6.16 -51.93 -0.32 1.23 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.03 6.72 -51.93 -0.35 0.68 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.51 6.17 -51.93 -0.32 1.19 16 35 H 0.40 6.21 6.23 -40.82 -0.25 5.96 16 36 H 0.09 1.63 6.38 -52.48 -0.33 1.29 16 37 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 39 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 40 H 0.13 3.84 5.75 -52.49 -0.30 3.54 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -29.04 337.61 -8.74 -37.77 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.66 Total: 11.90 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.41 Total: -18.16 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.37 Total: -32.67 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.17 Total: -4.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.04 -8.74 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890876658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.785 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds