Wall clock time and date at job start Tue Mar 31 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 102.99996 * 2 1 4 4 C 1.53004 * 109.46989 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46989 * 304.99446 * 4 3 2 6 6 C 1.52999 * 109.46983 * 184.99930 * 4 3 2 7 7 N 1.46494 * 109.47245 * 64.99960 * 4 3 2 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 4 3 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 4 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 4 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.09001 * 109.46864 * 299.99683 * 1 2 3 25 25 H 1.08997 * 109.47051 * 60.00195 * 1 2 3 26 26 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47531 * 59.99774 * 3 2 1 28 28 H 1.08999 * 109.47178 * 299.99917 * 3 2 1 29 29 H 1.08991 * 109.47058 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47259 * 300.00773 * 5 4 3 31 31 H 1.09004 * 109.46457 * 60.00310 * 5 4 3 32 32 H 1.08997 * 109.47399 * 299.99843 * 6 4 3 33 33 H 1.08999 * 109.47200 * 59.99838 * 6 4 3 34 34 H 1.09002 * 109.47048 * 179.97438 * 6 4 3 35 35 H 0.97004 * 120.00039 * 359.97438 * 7 4 3 36 36 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 37 37 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 -0.0006 5 6 4.3429 1.1752 1.1808 6 6 4.0872 3.4252 0.1251 7 7 4.2928 1.4150 -1.2527 8 6 5.6212 1.4605 -1.4762 9 8 6.3623 1.9374 -0.6391 10 6 6.1770 0.9302 -2.7399 11 6 5.3243 0.3806 -3.7036 12 6 5.8368 -0.1179 -4.8878 13 6 7.1918 -0.0788 -5.1323 14 6 8.0652 0.4703 -4.1748 15 6 9.4568 0.5125 -4.4231 16 1 9.8246 0.5066 -5.4385 17 6 10.3573 0.5617 -3.3531 18 7 9.9651 0.2225 -2.1520 19 14 12.1194 1.1116 -3.6398 20 1 12.2376 2.5639 -3.3527 21 1 13.0269 0.3539 -2.7411 22 1 12.4945 0.8544 -5.0534 23 6 7.5467 0.9773 -2.9712 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8032 2.2371 0.8899 28 1 1.8032 2.2371 -0.8900 29 1 5.4259 1.2976 1.1801 30 1 3.9332 1.5657 2.1123 31 1 4.0971 0.1170 1.0912 32 1 3.6595 3.9700 -0.7165 33 1 3.6776 3.8157 1.0566 34 1 5.1703 3.5480 0.1251 35 1 3.7014 1.0341 -1.9205 36 1 4.2602 0.3454 -3.5219 37 1 5.1703 -0.5397 -5.6255 38 1 7.5845 -0.4703 -6.0591 39 1 10.5894 0.2563 -1.4103 40 1 8.2081 1.4049 -2.2321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890876658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:20 Heat of formation + Delta-G solvation = -44.481476 kcal Electronic energy + Delta-G solvation = -21212.133628 eV Core-core repulsion = 18116.657104 eV Total energy + Delta-G solvation = -3095.476524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21538 -39.08168 -37.39382 -35.61334 -33.39981 -31.45923 -31.16032 -29.89963 -28.40768 -28.22918 -27.19470 -24.64900 -22.81584 -21.60595 -20.53335 -19.53106 -18.13871 -17.30550 -16.98757 -16.61310 -16.42315 -15.87858 -15.60386 -15.31794 -15.14750 -14.72676 -14.61437 -14.44697 -14.25061 -14.01293 -13.64489 -13.50343 -13.15877 -13.10666 -12.87843 -12.78540 -12.70374 -12.49725 -12.28701 -12.16213 -12.11615 -11.75265 -11.48560 -11.07430 -10.85652 -10.50428 -10.05747 -9.45229 -9.36816 -8.65546 -8.63318 -6.37179 0.42053 0.71188 1.02193 1.36494 1.48352 1.51344 1.70494 2.15324 2.20062 2.26649 2.80910 3.49464 3.71708 3.89901 4.02507 4.13147 4.35172 4.40513 4.41416 4.43601 4.56674 4.60198 4.72512 4.73076 4.88487 4.91750 4.94640 4.94951 5.09988 5.19640 5.28893 5.35468 5.37580 5.53378 5.64761 5.88870 5.95356 6.06836 6.30255 6.54524 6.74490 6.89128 6.96202 7.40396 8.31132 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023366 B = 0.003987 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.053657 B = 7021.899189 C = 7741.850429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.301 6.301 3 C -0.074 4.074 4 C 0.188 3.812 5 C -0.160 4.160 6 C -0.156 4.156 7 N -0.707 5.707 8 C 0.565 3.435 9 O -0.574 6.574 10 C -0.139 4.139 11 C -0.199 4.199 12 C -0.096 4.096 13 C -0.219 4.219 14 C 0.068 3.932 15 C -0.499 4.499 16 H 0.083 0.917 17 C 0.030 3.970 18 N -0.824 5.824 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.251 1.251 23 C -0.130 4.130 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.409 0.591 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.286 0.714 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 2.891 4.305 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.076 6.076 3 C -0.223 4.223 4 C 0.101 3.899 5 C -0.218 4.218 6 C -0.216 4.216 7 N -0.361 5.361 8 C 0.354 3.646 9 O -0.455 6.455 10 C -0.142 4.142 11 C -0.218 4.218 12 C -0.114 4.114 13 C -0.239 4.239 14 C 0.065 3.935 15 C -0.528 4.528 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.450 5.450 19 Si 0.804 3.196 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.174 1.174 23 C -0.150 4.150 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.247 0.753 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.611 2.302 5.152 17.544 hybrid contribution 0.140 0.819 -0.236 0.864 sum -16.471 3.121 4.916 17.470 Atomic orbital electron populations 1.23466 0.91610 1.07286 1.05988 1.87597 1.10105 1.11804 1.98080 1.23719 0.96088 0.94676 1.07783 1.20135 0.91035 0.94548 0.84135 1.22196 1.01345 1.00359 0.97897 1.22179 1.02588 0.93469 1.03352 1.45972 1.06407 1.63025 1.20663 1.18577 0.82434 0.77283 0.86265 1.90618 1.60133 1.47325 1.47435 1.19860 0.94582 1.04765 0.95043 1.20829 0.98215 1.07636 0.95146 1.20900 0.94649 0.98905 0.96935 1.21391 0.94222 1.07136 1.01151 1.17944 0.94245 0.89572 0.91709 1.19870 0.91327 1.46989 0.94591 0.89883 1.26848 1.05865 0.91861 0.93911 1.69901 1.39131 1.33962 1.01993 0.85179 0.75668 0.78933 0.79868 1.19150 1.19358 1.17398 1.21429 0.93056 1.01547 0.98995 0.89213 0.89414 0.87548 0.86172 0.87842 0.93735 0.89585 0.92368 0.91587 0.89106 0.93291 0.75303 0.85114 0.84557 0.87453 0.90349 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.76 113.37 1.22 -0.13 16 2 S -0.30 -6.15 20.15 -56.49 -1.14 -7.28 16 3 C -0.07 -1.32 4.98 71.98 0.36 -0.96 16 4 C 0.19 4.93 0.75 3.61 0.00 4.93 16 5 C -0.16 -4.73 8.08 71.98 0.58 -4.14 16 6 C -0.16 -4.02 8.40 71.98 0.60 -3.41 16 7 N -0.71 -22.93 4.83 -425.72 -2.06 -24.99 16 8 C 0.56 24.91 7.19 86.80 0.62 25.53 16 9 O -0.57 -29.04 12.54 -3.85 -0.05 -29.09 16 10 C -0.14 -6.74 5.87 -20.13 -0.12 -6.85 16 11 C -0.20 -8.11 9.55 22.70 0.22 -7.89 16 12 C -0.10 -3.93 10.01 22.17 0.22 -3.70 16 13 C -0.22 -10.50 9.78 22.77 0.22 -10.27 16 14 C 0.07 3.74 5.57 -21.32 -0.12 3.62 16 15 C -0.50 -27.62 9.05 23.47 0.21 -27.40 16 16 H 0.08 4.35 7.91 -2.91 -0.02 4.33 16 17 C 0.03 1.60 5.14 85.25 0.44 2.04 16 18 N -0.82 -46.71 10.96 21.82 0.24 -46.47 16 19 Si 0.98 40.25 29.60 68.60 2.03 42.28 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 23 C -0.13 -7.33 8.23 23.01 0.19 -7.14 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.69 6.16 -2.39 -0.01 1.67 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.80 6.72 -2.38 -0.02 1.78 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.69 6.17 -2.39 -0.01 1.67 16 35 H 0.41 11.64 6.23 -92.71 -0.58 11.07 16 36 H 0.13 4.21 6.38 -2.91 -0.02 4.19 16 37 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 39 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 40 H 0.10 6.23 5.75 -2.91 -0.02 6.21 16 Total: -1.00 -69.20 337.61 4.15 -65.05 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.47 Total: 36.28 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 4.66 Total: -35.78 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.82 Total: -71.46 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.05 Total: -29.09 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.14 Total: -7.28 kcal Total: -69.20 4.15 -65.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890876658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.565 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds