Wall clock time and date at job start Tue Mar 31 2020 08:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00253 * 2 1 4 4 O 1.20825 * 120.00037 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99919 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46925 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00240 * 264.23764 * 6 5 3 8 8 H 1.07996 * 120.00081 * 207.06944 * 7 6 5 9 9 C 1.38953 * 119.99844 * 27.07429 * 7 6 5 10 10 N 1.31410 * 120.00244 * 14.05610 * 9 7 6 11 11 Si 1.86797 * 119.99862 * 194.05952 * 9 7 6 12 12 H 1.48506 * 109.47260 * 89.99734 * 11 9 7 13 13 H 1.48499 * 109.47252 * 209.99681 * 11 9 7 14 14 H 1.48501 * 109.47021 * 329.99927 * 11 9 7 15 15 C 1.34782 * 119.99867 * 84.23730 * 6 5 3 16 16 O 1.21289 * 119.99809 * 4.30694 * 15 6 5 17 17 C 1.50693 * 119.99890 * 184.30962 * 15 6 5 18 18 H 1.09000 * 109.47150 * 322.97489 * 17 15 6 19 19 C 1.52998 * 109.47417 * 82.97914 * 17 15 6 20 20 C 1.50708 * 109.47036 * 202.97427 * 17 15 6 21 21 C 1.38381 * 120.00118 * 274.98086 * 20 17 15 22 22 N 1.32134 * 119.99351 * 179.76841 * 21 20 17 23 23 C 1.32151 * 120.00091 * 0.50231 * 22 21 20 24 24 C 1.38345 * 119.99959 * 359.49642 * 23 22 21 25 25 N 1.32125 * 119.99849 * 94.99660 * 20 17 15 26 26 H 1.09001 * 109.46553 * 60.00667 * 1 2 3 27 27 H 1.08997 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47493 * 300.00891 * 1 2 3 29 29 H 1.08997 * 109.47146 * 59.99649 * 5 3 2 30 30 H 1.08997 * 109.47053 * 299.99382 * 5 3 2 31 31 H 0.96997 * 119.99933 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.47560 * 179.59698 * 19 17 15 33 33 H 1.09008 * 109.47002 * 299.59608 * 19 17 15 34 34 H 1.08997 * 109.47310 * 59.59309 * 19 17 15 35 35 H 1.07997 * 120.00588 * 0.02562 * 21 20 17 36 36 H 1.08000 * 119.99555 * 179.77000 * 23 22 21 37 37 H 1.08002 * 119.99654 * 180.22632 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.2910 3.3025 -1.1817 8 1 4.9831 4.1315 -1.1901 9 6 3.7138 2.8671 -2.3683 10 7 2.6787 2.0582 -2.3375 11 14 4.4094 3.4317 -4.0074 12 1 5.4556 2.4779 -4.4561 13 1 3.3207 3.4827 -5.0160 14 1 5.0051 4.7832 -3.8532 15 6 4.0600 3.3599 1.1608 16 8 3.8626 2.7890 2.2126 17 6 4.3927 4.8296 1.1520 18 1 5.1249 5.0317 0.3702 19 6 3.1223 5.6385 0.8824 20 6 4.9644 5.2233 2.4897 21 6 4.1183 5.5569 3.5326 22 7 4.6196 5.8976 4.7068 23 6 5.9290 5.9294 4.8821 24 6 6.7748 5.5958 3.8394 25 7 6.2734 5.2502 2.6666 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.9564 0.7804 -0.8891 30 1 3.9557 0.7809 0.8909 31 1 2.2760 1.7540 -3.1659 32 1 3.3616 6.7019 0.8831 33 1 2.7127 5.3589 -0.0883 34 1 2.3875 5.4309 1.6602 35 1 3.0482 5.5348 3.3882 36 1 6.3387 6.2115 5.8407 37 1 7.8449 5.6182 3.9838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119563648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:59 Heat of formation + Delta-G solvation = -56.719740 kcal Electronic energy + Delta-G solvation = -24240.709616 eV Core-core repulsion = 20598.409186 eV Total energy + Delta-G solvation = -3642.300430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88349 -39.45355 -38.38642 -35.52997 -34.58290 -34.28177 -33.41155 -31.63588 -29.85408 -28.36643 -26.31419 -25.15861 -24.60495 -24.10986 -22.25254 -20.18524 -19.23919 -17.35731 -17.26893 -16.71460 -16.58430 -16.25030 -15.48879 -15.29120 -15.21996 -14.57654 -14.35392 -14.07635 -13.77889 -13.52352 -12.92478 -12.56454 -12.48856 -12.31497 -11.76873 -11.53753 -11.32301 -11.30127 -11.27245 -11.13606 -10.98807 -10.90504 -10.83581 -10.58576 -10.35350 -9.78419 -9.52921 -9.08811 -9.03029 -8.74529 -8.53513 -7.92066 -6.52568 -4.13710 1.08093 1.44109 3.05688 3.16127 3.18439 3.44010 3.71783 3.85837 4.04801 4.06639 4.26576 4.53354 4.70835 4.82102 4.92306 5.07739 5.45486 5.48933 5.69996 5.70457 5.77198 5.78999 5.92713 5.97207 6.00618 6.17868 6.29645 6.42554 6.48416 6.54114 6.67757 6.80465 7.30237 7.47197 7.56809 7.59435 8.08508 8.17760 8.92581 9.13797 9.27975 9.68236 10.54268 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.005981 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.084926 B = 4679.987766 C = 5874.320092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.379 6.379 3 C 0.485 3.515 4 O -0.492 6.492 5 C 0.159 3.841 6 N -0.424 5.424 7 C -0.340 4.340 8 H 0.103 0.897 9 C 0.043 3.957 10 N -0.866 5.866 11 Si 0.927 3.073 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.268 1.268 15 C 0.489 3.511 16 O -0.599 6.599 17 C -0.044 4.044 18 H 0.112 0.888 19 C -0.132 4.132 20 C 0.121 3.879 21 C 0.072 3.928 22 N -0.442 5.442 23 C 0.029 3.971 24 C 0.047 3.953 25 N -0.437 5.437 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.272 0.728 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 2.732 4.323 5.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.296 6.296 3 C 0.325 3.675 4 O -0.376 6.376 5 C 0.033 3.967 6 N -0.142 5.142 7 C -0.467 4.467 8 H 0.120 0.880 9 C -0.163 4.163 10 N -0.503 5.503 11 Si 0.753 3.247 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.278 3.722 16 O -0.485 6.485 17 C -0.067 4.067 18 H 0.129 0.871 19 C -0.190 4.190 20 C -0.020 4.020 21 C -0.088 4.088 22 N -0.156 5.156 23 C -0.130 4.130 24 C -0.113 4.113 25 N -0.152 5.152 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.185 0.815 36 H 0.181 0.819 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.140 2.653 4.686 5.794 hybrid contribution 0.026 0.210 -1.072 1.093 sum 2.167 2.863 3.614 5.094 Atomic orbital electron populations 1.22906 0.78718 1.01689 1.01618 1.86444 1.21670 1.35628 1.85903 1.23751 0.92109 0.80635 0.70977 1.90493 1.66291 1.36206 1.44579 1.20333 0.87527 0.85600 1.03213 1.43193 1.57362 1.07621 1.05990 1.19601 1.25551 1.18453 0.83127 0.87982 1.25318 0.94058 0.96852 1.00084 1.69705 1.18635 1.33299 1.28642 0.85921 0.78426 0.79325 0.80979 1.20179 1.20950 1.19254 1.19800 0.81112 0.87413 0.83918 1.90561 1.56321 1.70069 1.31527 1.19951 0.99445 0.94780 0.92491 0.87052 1.21666 0.95242 0.97892 1.04231 1.21948 0.89590 0.93306 0.97157 1.23565 1.02079 0.94764 0.88412 1.68427 1.14058 1.10389 1.22772 1.23631 0.90230 0.98726 1.00421 1.23669 1.01706 0.96373 0.89569 1.68245 1.13853 1.09845 1.23296 0.92588 0.89743 0.93225 0.86783 0.90001 0.91690 0.92586 0.89398 0.92439 0.81502 0.81930 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.10 10.56 -39.25 -0.41 -8.51 16 3 C 0.48 11.77 5.98 36.01 0.22 11.99 16 4 O -0.49 -13.18 15.21 -18.75 -0.29 -13.47 16 5 C 0.16 3.74 5.18 -5.19 -0.03 3.72 16 6 N -0.42 -10.31 2.15 -116.10 -0.25 -10.56 16 7 C -0.34 -8.13 8.53 -14.93 -0.13 -8.26 16 8 H 0.10 2.31 6.15 -52.49 -0.32 1.99 16 9 C 0.04 1.02 4.99 -17.47 -0.09 0.93 16 10 N -0.87 -21.75 8.83 55.50 0.49 -21.26 16 11 Si 0.93 18.72 29.57 -169.99 -5.03 13.69 16 12 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 15 C 0.49 11.66 6.55 -10.99 -0.07 11.59 16 16 O -0.60 -15.62 15.71 5.55 0.09 -15.53 16 17 C -0.04 -0.89 2.38 -92.92 -0.22 -1.11 16 18 H 0.11 2.21 6.30 -51.93 -0.33 1.88 16 19 C -0.13 -2.38 8.57 37.16 0.32 -2.07 16 20 C 0.12 2.29 5.24 -82.41 -0.43 1.86 16 21 C 0.07 1.29 10.10 -17.37 -0.18 1.11 16 22 N -0.44 -7.38 10.50 -13.06 -0.14 -7.52 16 23 C 0.03 0.40 11.22 -17.37 -0.20 0.21 16 24 C 0.05 0.66 11.22 -17.38 -0.20 0.47 16 25 N -0.44 -7.90 10.42 -9.29 -0.10 -7.99 16 26 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.11 2.64 6.93 -51.93 -0.36 2.28 16 30 H 0.08 1.84 7.54 -51.93 -0.39 1.45 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.76 7.78 -51.92 -0.40 1.36 16 34 H 0.06 1.02 6.54 -51.93 -0.34 0.68 16 35 H 0.17 2.84 6.34 -52.49 -0.33 2.51 16 36 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -31.79 319.37 -4.90 -36.70 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.15 Total: 7.37 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 0.07 Total: 22.28 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.01 Total: -47.33 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.61 Total: -37.51 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.79 -4.90 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119563648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.024 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds