Wall clock time and date at job start Tue Mar 31 2020 08:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00253 * 2 1 4 4 O 1.20825 * 120.00037 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99919 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46925 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00240 * 264.23764 * 6 5 3 8 8 H 1.07996 * 120.00081 * 207.06944 * 7 6 5 9 9 C 1.38953 * 119.99844 * 27.07429 * 7 6 5 10 10 N 1.31410 * 120.00244 * 14.05610 * 9 7 6 11 11 Si 1.86797 * 119.99862 * 194.05952 * 9 7 6 12 12 H 1.48506 * 109.47260 * 89.99734 * 11 9 7 13 13 H 1.48499 * 109.47252 * 209.99681 * 11 9 7 14 14 H 1.48501 * 109.47021 * 329.99927 * 11 9 7 15 15 C 1.34782 * 119.99867 * 84.23730 * 6 5 3 16 16 O 1.21289 * 119.99809 * 4.30694 * 15 6 5 17 17 C 1.50693 * 119.99890 * 184.30962 * 15 6 5 18 18 H 1.09000 * 109.47150 * 322.97489 * 17 15 6 19 19 C 1.52998 * 109.47417 * 82.97914 * 17 15 6 20 20 C 1.50708 * 109.47036 * 202.97427 * 17 15 6 21 21 C 1.38381 * 120.00118 * 274.98086 * 20 17 15 22 22 N 1.32134 * 119.99351 * 179.76841 * 21 20 17 23 23 C 1.32151 * 120.00091 * 0.50231 * 22 21 20 24 24 C 1.38345 * 119.99959 * 359.49642 * 23 22 21 25 25 N 1.32125 * 119.99849 * 94.99660 * 20 17 15 26 26 H 1.09001 * 109.46553 * 60.00667 * 1 2 3 27 27 H 1.08997 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47493 * 300.00891 * 1 2 3 29 29 H 1.08997 * 109.47146 * 59.99649 * 5 3 2 30 30 H 1.08997 * 109.47053 * 299.99382 * 5 3 2 31 31 H 0.96997 * 119.99933 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.47560 * 179.59698 * 19 17 15 33 33 H 1.09008 * 109.47002 * 299.59608 * 19 17 15 34 34 H 1.08997 * 109.47310 * 59.59309 * 19 17 15 35 35 H 1.07997 * 120.00588 * 0.02562 * 21 20 17 36 36 H 1.08000 * 119.99555 * 179.77000 * 23 22 21 37 37 H 1.08002 * 119.99654 * 180.22632 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.2910 3.3025 -1.1817 8 1 4.9831 4.1315 -1.1901 9 6 3.7138 2.8671 -2.3683 10 7 2.6787 2.0582 -2.3375 11 14 4.4094 3.4317 -4.0074 12 1 5.4556 2.4779 -4.4561 13 1 3.3207 3.4827 -5.0160 14 1 5.0051 4.7832 -3.8532 15 6 4.0600 3.3599 1.1608 16 8 3.8626 2.7890 2.2126 17 6 4.3927 4.8296 1.1520 18 1 5.1249 5.0317 0.3702 19 6 3.1223 5.6385 0.8824 20 6 4.9644 5.2233 2.4897 21 6 4.1183 5.5569 3.5326 22 7 4.6196 5.8976 4.7068 23 6 5.9290 5.9294 4.8821 24 6 6.7748 5.5958 3.8394 25 7 6.2734 5.2502 2.6666 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.9564 0.7804 -0.8891 30 1 3.9557 0.7809 0.8909 31 1 2.2760 1.7540 -3.1659 32 1 3.3616 6.7019 0.8831 33 1 2.7127 5.3589 -0.0883 34 1 2.3875 5.4309 1.6602 35 1 3.0482 5.5348 3.3882 36 1 6.3387 6.2115 5.8407 37 1 7.8449 5.6182 3.9838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119563648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:58 Heat of formation + Delta-G solvation = -77.943943 kcal Electronic energy + Delta-G solvation = -24241.629966 eV Core-core repulsion = 20598.409186 eV Total energy + Delta-G solvation = -3643.220780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18818 -41.25418 -40.15624 -37.32590 -36.46297 -35.71447 -34.77010 -33.49805 -31.23022 -30.04180 -27.89281 -26.86091 -26.11663 -25.37287 -23.75809 -21.93433 -21.04563 -18.99068 -18.73342 -18.39189 -18.01557 -17.86476 -17.27776 -16.93977 -16.71023 -16.18198 -15.93613 -15.49693 -15.45716 -14.91672 -14.58699 -14.20604 -14.13887 -13.74429 -13.44490 -13.12537 -13.00451 -12.85203 -12.68565 -12.66026 -12.59092 -12.54815 -12.22347 -12.19055 -12.00064 -11.51969 -11.40791 -10.94268 -10.57327 -10.08762 -9.99990 -9.80316 -8.35404 -6.02483 -0.13832 0.19543 1.42658 1.50714 1.60795 1.69782 1.84274 2.21907 2.35591 2.62325 2.93601 3.10394 3.15978 3.38166 3.62951 3.83028 4.12929 4.15884 4.26930 4.31328 4.36899 4.43237 4.47548 4.48903 4.53615 4.63983 4.68173 4.74142 4.86620 4.97786 5.28496 5.43557 5.48671 5.66904 5.76459 6.31347 6.35008 6.85802 7.07006 7.27784 7.43575 7.83836 8.71079 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.005981 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.084926 B = 4679.987766 C = 5874.320092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.381 6.381 3 C 0.486 3.514 4 O -0.525 6.525 5 C 0.155 3.845 6 N -0.433 5.433 7 C -0.352 4.352 8 H 0.112 0.888 9 C 0.004 3.996 10 N -0.892 5.892 11 Si 0.993 3.007 12 H -0.271 1.271 13 H -0.290 1.290 14 H -0.258 1.258 15 C 0.479 3.521 16 O -0.629 6.629 17 C -0.036 4.036 18 H 0.109 0.891 19 C -0.122 4.122 20 C 0.096 3.904 21 C 0.057 3.943 22 N -0.458 5.458 23 C 0.043 3.957 24 C 0.052 3.948 25 N -0.463 5.463 26 H 0.046 0.954 27 H 0.132 0.868 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.270 0.730 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.163 0.837 36 H 0.212 0.788 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 3.539 4.897 7.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.298 6.298 3 C 0.328 3.672 4 O -0.411 6.411 5 C 0.030 3.970 6 N -0.151 5.151 7 C -0.478 4.478 8 H 0.129 0.871 9 C -0.199 4.199 10 N -0.529 5.529 11 Si 0.817 3.183 12 H -0.196 1.196 13 H -0.216 1.216 14 H -0.182 1.182 15 C 0.269 3.731 16 O -0.517 6.517 17 C -0.059 4.059 18 H 0.127 0.873 19 C -0.180 4.180 20 C -0.043 4.043 21 C -0.101 4.101 22 N -0.173 5.173 23 C -0.117 4.117 24 C -0.109 4.109 25 N -0.179 5.179 26 H 0.065 0.935 27 H 0.150 0.850 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.181 0.819 36 H 0.229 0.771 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.542 3.441 5.237 7.198 hybrid contribution -0.375 -0.085 -1.105 1.170 sum 3.167 3.356 4.132 6.194 Atomic orbital electron populations 1.23253 0.76221 1.04677 1.01169 1.86410 1.24086 1.34021 1.85307 1.23820 0.92358 0.80889 0.70089 1.90464 1.67027 1.37375 1.46283 1.20378 0.87587 0.85841 1.03238 1.43423 1.57261 1.07931 1.06477 1.19917 1.25845 1.18852 0.83231 0.87101 1.26125 0.93991 0.96774 1.02984 1.69816 1.19664 1.34366 1.29084 0.84915 0.77454 0.79350 0.76598 1.19596 1.21632 1.18186 1.20493 0.80424 0.88959 0.83272 1.90513 1.57675 1.71098 1.32431 1.19828 1.00050 0.92239 0.93743 0.87326 1.21577 0.94370 0.99537 1.02477 1.21677 0.90381 0.95488 0.96744 1.23483 1.01986 0.95764 0.88900 1.68474 1.15868 1.10928 1.22038 1.24473 0.89039 0.96056 1.02135 1.24469 1.03932 0.94277 0.88235 1.68204 1.13433 1.10718 1.25525 0.93542 0.85022 0.93216 0.86838 0.89614 0.91973 0.89360 0.91882 0.92825 0.81945 0.77106 0.77374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.56 16 2 O -0.38 -16.37 10.56 -51.39 -0.54 -16.92 16 3 C 0.49 24.21 5.98 71.24 0.43 24.64 16 4 O -0.52 -29.02 15.21 21.97 0.33 -28.68 16 5 C 0.16 7.53 5.18 85.63 0.44 7.97 16 6 N -0.43 -21.66 2.15 -639.60 -1.38 -23.03 16 7 C -0.35 -17.04 8.53 84.04 0.72 -16.32 16 8 H 0.11 5.05 6.15 -2.91 -0.02 5.03 16 9 C 0.00 0.19 4.99 84.93 0.42 0.62 16 10 N -0.89 -45.54 8.83 21.66 0.19 -45.34 16 11 Si 0.99 38.22 29.57 68.60 2.03 40.25 16 12 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 13 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 15 C 0.48 23.45 6.55 87.65 0.57 24.02 16 16 O -0.63 -33.82 15.71 -3.06 -0.05 -33.87 16 17 C -0.04 -1.48 2.38 -12.29 -0.03 -1.51 16 18 H 0.11 4.37 6.30 -2.39 -0.02 4.36 16 19 C -0.12 -4.47 8.57 71.98 0.62 -3.85 16 20 C 0.10 3.63 5.24 42.55 0.22 3.85 16 21 C 0.06 2.02 10.10 84.68 0.86 2.87 16 22 N -0.46 -14.51 10.50 -195.23 -2.05 -16.56 16 23 C 0.04 1.04 11.22 84.67 0.95 1.99 16 24 C 0.05 1.30 11.22 84.67 0.95 2.25 16 25 N -0.46 -16.09 10.42 -183.29 -1.91 -18.00 16 26 H 0.05 1.65 8.13 -2.39 -0.02 1.64 16 27 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.11 5.41 6.93 -2.39 -0.02 5.40 16 30 H 0.09 3.99 7.54 -2.39 -0.02 3.97 16 31 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.61 7.78 -2.38 -0.02 2.59 16 34 H 0.05 1.97 6.54 -2.39 -0.02 1.96 16 35 H 0.16 5.69 6.34 -2.91 -0.02 5.67 16 36 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.21 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -70.48 319.37 5.08 -65.40 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 1.11 Total: 27.66 kcal Atomic # 6 Polarization: 41.74 SS G_CDS: 7.35 Total: 49.09 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.15 Total: -102.94 kcal Atomic # 8 Polarization: -79.21 SS G_CDS: -0.26 Total: -79.46 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -70.48 5.08 -65.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119563648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.545 kcal (2) G-P(sol) polarization free energy of solvation -70.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds