Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47194 * 2 1 4 4 C 1.52995 * 109.47123 * 120.00589 * 2 1 3 5 5 S 1.81402 * 109.46921 * 240.00300 * 2 1 3 6 6 C 1.76201 * 103.00109 * 67.95159 * 5 2 1 7 7 C 1.38792 * 120.10391 * 350.67076 * 6 5 2 8 8 C 1.38191 * 119.98883 * 180.02562 * 7 6 5 9 9 C 1.38299 * 120.20277 * 0.02562 * 8 7 6 10 10 C 1.38249 * 120.20794 * 0.02562 * 9 8 7 11 11 C 1.38657 * 120.01036 * 359.67718 * 10 9 8 12 12 N 1.40139 * 120.10427 * 180.32118 * 11 10 9 13 13 C 1.34780 * 119.99815 * 19.08208 * 12 11 10 14 14 O 1.21294 * 120.00211 * 6.95650 * 13 12 11 15 15 C 1.50700 * 119.99900 * 186.94828 * 13 12 11 16 16 C 1.50706 * 109.46954 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99781 * 359.97438 * 16 15 13 18 18 C 1.37874 * 119.99762 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99927 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47248 * 59.99748 * 20 18 16 22 22 H 1.48496 * 109.47141 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47204 * 300.00103 * 20 18 16 24 24 H 1.09004 * 109.47252 * 74.12783 * 1 2 3 25 25 H 1.09000 * 109.47433 * 194.12898 * 1 2 3 26 26 H 1.09002 * 109.47446 * 314.12663 * 1 2 3 27 27 H 1.09004 * 109.47043 * 46.59941 * 3 2 1 28 28 H 1.09000 * 109.47277 * 166.59595 * 3 2 1 29 29 H 1.09000 * 109.47374 * 286.60194 * 3 2 1 30 30 H 1.09004 * 109.47594 * 60.00000 * 4 2 1 31 31 H 1.09006 * 109.47073 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46880 * 299.99612 * 4 2 1 33 33 H 1.07999 * 120.00032 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.90291 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.90001 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.00095 * 180.02562 * 10 9 8 37 37 H 0.97000 * 120.00189 * 199.08626 * 12 11 10 38 38 H 1.09004 * 109.47208 * 300.00112 * 15 13 12 39 39 H 1.08995 * 109.47067 * 60.00451 * 15 13 12 40 40 H 0.96996 * 120.00467 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 16 2.1346 -0.8551 -1.4812 6 6 1.6591 0.2288 -2.7865 7 6 0.8220 1.3052 -2.5275 8 6 0.4501 2.1534 -3.5531 9 6 0.9092 1.9334 -4.8389 10 6 1.7425 0.8632 -5.1064 11 6 2.1261 0.0101 -4.0828 12 7 2.9761 -1.0714 -4.3505 13 6 3.7232 -1.0797 -5.4723 14 8 3.7569 -0.0994 -6.1858 15 6 4.5167 -2.3070 -5.8400 16 6 5.2592 -2.0579 -7.1276 17 1 5.1654 -1.1063 -7.6297 18 6 6.0573 -3.0453 -7.6652 19 7 6.1711 -4.2043 -7.0541 20 14 6.9770 -2.7370 -9.2615 21 1 7.8987 -1.5857 -9.0874 22 1 7.7581 -3.9466 -9.6244 23 1 6.0048 -2.4335 -10.3423 24 1 -0.3634 0.2811 -0.9885 25 1 -0.3634 -0.9966 0.2509 26 1 -0.3634 0.7155 0.7377 27 1 1.4953 2.0204 0.7467 28 1 3.1036 1.4518 0.2382 29 1 1.8843 1.8829 -0.9848 30 1 1.6767 -1.7491 1.2491 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -0.2075 2.1392 33 1 0.4607 1.4792 -1.5247 34 1 -0.2009 2.9908 -3.3499 35 1 0.6152 2.5992 -5.6368 36 1 2.0993 0.6947 -6.1117 37 1 3.0268 -1.8140 -3.7285 38 1 5.2304 -2.5294 -5.0466 39 1 3.8404 -3.1521 -5.9678 40 1 6.7323 -4.8991 -7.4324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -4.442736 kcal Electronic energy + Delta-G solvation = -20981.142659 eV Core-core repulsion = 17887.402345 eV Total energy + Delta-G solvation = -3093.740314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03534 -38.18756 -36.69006 -34.20328 -33.01647 -31.10595 -30.01901 -28.26780 -27.67026 -27.51460 -24.02255 -22.95298 -22.11293 -20.84905 -19.67609 -18.02295 -16.82409 -16.32706 -15.92049 -15.83884 -14.91827 -14.82026 -14.55670 -14.51363 -14.35216 -13.85914 -13.43444 -13.17865 -12.91646 -12.79023 -12.38453 -12.31363 -12.16828 -11.97987 -11.75915 -11.41849 -11.39028 -11.28561 -10.84265 -10.69288 -10.54227 -10.10839 -10.02232 -9.96061 -9.48337 -9.35745 -8.71777 -8.47137 -7.99805 -7.15318 -6.09719 -4.10517 1.30597 1.49134 1.53690 2.37675 3.35578 3.38059 3.40251 3.42463 3.65726 4.00942 4.41052 4.41939 4.45355 4.76871 4.87736 5.14526 5.24231 5.26792 5.28541 5.35234 5.41869 5.49627 5.50379 5.51472 5.61958 5.69874 5.76905 5.87099 5.90588 5.96002 6.19470 6.36909 6.45687 6.68555 6.80182 7.09034 7.22256 7.29172 7.84267 7.93144 8.25970 8.93328 8.99731 9.54593 11.02485 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.003832 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.691136 B = 7304.678422 C = 8253.707394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.047 4.047 3 C -0.170 4.170 4 C -0.128 4.128 5 S -0.120 6.120 6 C -0.132 4.132 7 C -0.127 4.127 8 C -0.143 4.143 9 C -0.098 4.098 10 C -0.133 4.133 11 C 0.192 3.808 12 N -0.680 5.680 13 C 0.516 3.484 14 O -0.518 6.518 15 C 0.006 3.994 16 C -0.513 4.513 17 H 0.076 0.924 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.162 0.838 37 H 0.409 0.591 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 8.983 16.357 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.157 4.157 3 C -0.228 4.228 4 C -0.187 4.187 5 S 0.123 5.877 6 C -0.247 4.247 7 C -0.151 4.151 8 C -0.164 4.164 9 C -0.119 4.119 10 C -0.155 4.155 11 C 0.090 3.910 12 N -0.323 5.323 13 C 0.308 3.692 14 O -0.393 6.393 15 C -0.033 4.033 16 C -0.551 4.551 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.162 0.838 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.179 0.821 37 H 0.245 0.755 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.896 8.309 15.805 21.456 hybrid contribution -0.133 0.862 -0.377 0.950 sum -12.029 9.170 15.428 21.606 Atomic orbital electron populations 1.22462 0.92599 1.03230 1.03323 1.22844 0.98691 0.98600 0.95551 1.22615 1.02289 0.93705 1.04194 1.21689 1.02015 1.00361 0.94618 1.85267 1.74665 1.30215 0.97522 1.21261 1.06610 1.01856 0.95008 1.21408 0.98485 0.94872 1.00299 1.20922 1.02160 1.00223 0.93083 1.21125 0.96820 0.97334 0.96645 1.21780 0.97938 0.95081 1.00689 1.17583 0.91655 0.90484 0.91317 1.44274 1.41786 1.20800 1.25454 1.22371 0.77377 0.91618 0.77849 1.90447 1.62421 1.35786 1.50605 1.19296 0.95260 0.89442 0.99267 1.21078 1.26860 1.01024 1.06151 0.90599 1.24998 0.96623 0.94901 0.97917 1.69945 1.39602 1.04585 1.39669 0.86455 0.79742 0.77457 0.83207 1.20068 1.21305 1.20074 0.90685 0.91308 0.91688 0.91604 0.91365 0.89833 0.91601 0.91408 0.90968 0.83807 0.86273 0.85880 0.82125 0.75492 0.92978 0.92863 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 7.94 37.16 0.30 -1.00 16 2 C -0.05 -0.44 0.86 -90.63 -0.08 -0.52 16 3 C -0.17 -1.56 7.93 37.15 0.29 -1.26 16 4 C -0.13 -1.02 8.39 37.15 0.31 -0.71 16 5 S -0.12 -1.56 19.50 -107.50 -2.10 -3.66 16 6 C -0.13 -1.96 5.79 -38.90 -0.23 -2.19 16 7 C -0.13 -1.60 6.10 -39.39 -0.24 -1.84 16 8 C -0.14 -1.76 10.04 -39.58 -0.40 -2.16 16 9 C -0.10 -1.39 10.04 -39.55 -0.40 -1.79 16 10 C -0.13 -2.34 8.78 -39.42 -0.35 -2.69 16 11 C 0.19 3.39 6.52 -83.43 -0.54 2.85 16 12 N -0.68 -12.84 5.25 -9.70 -0.05 -12.89 16 13 C 0.52 11.77 7.66 -10.98 -0.08 11.68 16 14 O -0.52 -12.95 12.39 5.55 0.07 -12.88 16 15 C 0.01 0.16 5.46 -29.03 -0.16 0.01 16 16 C -0.51 -14.67 8.92 -34.44 -0.31 -14.98 16 17 H 0.08 2.24 6.75 -52.49 -0.35 1.88 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.07 0.69 5.04 -51.93 -0.26 0.43 16 25 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 26 H 0.06 0.42 7.89 -51.93 -0.41 0.01 16 27 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 28 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.08 0.88 4.12 -51.93 -0.21 0.67 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 1.46 3.16 -52.49 -0.17 1.30 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.16 3.21 5.43 -52.49 -0.28 2.93 16 37 H 0.41 6.97 7.49 -40.82 -0.31 6.66 16 38 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -31.14 330.23 -8.70 -39.83 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.34 Total: 6.18 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.97 Total: -13.08 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.69 Total: -38.30 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.10 Total: -3.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.14 -8.70 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.391 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds