Wall clock time and date at job start Tue Mar 31 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47194 * 2 1 4 4 C 1.52995 * 109.47123 * 120.00589 * 2 1 3 5 5 S 1.81402 * 109.46921 * 240.00300 * 2 1 3 6 6 C 1.76201 * 103.00109 * 67.95159 * 5 2 1 7 7 C 1.38792 * 120.10391 * 350.67076 * 6 5 2 8 8 C 1.38191 * 119.98883 * 180.02562 * 7 6 5 9 9 C 1.38299 * 120.20277 * 0.02562 * 8 7 6 10 10 C 1.38249 * 120.20794 * 0.02562 * 9 8 7 11 11 C 1.38657 * 120.01036 * 359.67718 * 10 9 8 12 12 N 1.40139 * 120.10427 * 180.32118 * 11 10 9 13 13 C 1.34780 * 119.99815 * 19.08208 * 12 11 10 14 14 O 1.21294 * 120.00211 * 6.95650 * 13 12 11 15 15 C 1.50700 * 119.99900 * 186.94828 * 13 12 11 16 16 C 1.50706 * 109.46954 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99781 * 359.97438 * 16 15 13 18 18 C 1.37874 * 119.99762 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99927 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47248 * 59.99748 * 20 18 16 22 22 H 1.48496 * 109.47141 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47204 * 300.00103 * 20 18 16 24 24 H 1.09004 * 109.47252 * 74.12783 * 1 2 3 25 25 H 1.09000 * 109.47433 * 194.12898 * 1 2 3 26 26 H 1.09002 * 109.47446 * 314.12663 * 1 2 3 27 27 H 1.09004 * 109.47043 * 46.59941 * 3 2 1 28 28 H 1.09000 * 109.47277 * 166.59595 * 3 2 1 29 29 H 1.09000 * 109.47374 * 286.60194 * 3 2 1 30 30 H 1.09004 * 109.47594 * 60.00000 * 4 2 1 31 31 H 1.09006 * 109.47073 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46880 * 299.99612 * 4 2 1 33 33 H 1.07999 * 120.00032 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.90291 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.90001 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.00095 * 180.02562 * 10 9 8 37 37 H 0.97000 * 120.00189 * 199.08626 * 12 11 10 38 38 H 1.09004 * 109.47208 * 300.00112 * 15 13 12 39 39 H 1.08995 * 109.47067 * 60.00451 * 15 13 12 40 40 H 0.96996 * 120.00467 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 16 2.1346 -0.8551 -1.4812 6 6 1.6591 0.2288 -2.7865 7 6 0.8220 1.3052 -2.5275 8 6 0.4501 2.1534 -3.5531 9 6 0.9092 1.9334 -4.8389 10 6 1.7425 0.8632 -5.1064 11 6 2.1261 0.0101 -4.0828 12 7 2.9761 -1.0714 -4.3505 13 6 3.7232 -1.0797 -5.4723 14 8 3.7569 -0.0994 -6.1858 15 6 4.5167 -2.3070 -5.8400 16 6 5.2592 -2.0579 -7.1276 17 1 5.1654 -1.1063 -7.6297 18 6 6.0573 -3.0453 -7.6652 19 7 6.1711 -4.2043 -7.0541 20 14 6.9770 -2.7370 -9.2615 21 1 7.8987 -1.5857 -9.0874 22 1 7.7581 -3.9466 -9.6244 23 1 6.0048 -2.4335 -10.3423 24 1 -0.3634 0.2811 -0.9885 25 1 -0.3634 -0.9966 0.2509 26 1 -0.3634 0.7155 0.7377 27 1 1.4953 2.0204 0.7467 28 1 3.1036 1.4518 0.2382 29 1 1.8843 1.8829 -0.9848 30 1 1.6767 -1.7491 1.2491 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -0.2075 2.1392 33 1 0.4607 1.4792 -1.5247 34 1 -0.2009 2.9908 -3.3499 35 1 0.6152 2.5992 -5.6368 36 1 2.0993 0.6947 -6.1117 37 1 3.0268 -1.8140 -3.7285 38 1 5.2304 -2.5294 -5.0466 39 1 3.8404 -3.1521 -5.9678 40 1 6.7323 -4.8991 -7.4324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:36 Heat of formation + Delta-G solvation = -22.180942 kcal Electronic energy + Delta-G solvation = -20981.911845 eV Core-core repulsion = 17887.402345 eV Total energy + Delta-G solvation = -3094.509500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52124 -39.53700 -37.53061 -35.69772 -35.17294 -32.20705 -31.72072 -29.93681 -28.31351 -28.22313 -25.97970 -24.16426 -23.46481 -21.66615 -21.26471 -19.27505 -18.61390 -17.77146 -17.66767 -16.75365 -16.58859 -16.38373 -15.88020 -15.46925 -15.22888 -15.14771 -14.82528 -14.56192 -14.22683 -13.98632 -13.63899 -13.44368 -13.17101 -13.10656 -12.86214 -12.80427 -12.66158 -12.57921 -12.24851 -12.08913 -12.05126 -11.65445 -11.52815 -11.30145 -10.87917 -10.65741 -10.60815 -10.44038 -9.26180 -8.28442 -8.27940 -6.36990 0.16467 0.33646 0.51232 1.39575 1.42129 1.42644 1.51159 1.70910 2.12317 2.42881 2.77918 3.07277 3.72307 3.73187 3.80907 4.00285 4.08400 4.21897 4.37757 4.47481 4.54345 4.61612 4.68541 4.76806 4.83067 4.84973 4.89907 4.92868 4.95730 5.14010 5.15573 5.18774 5.25119 5.28554 5.31795 5.48825 5.58046 5.69631 5.96039 6.01848 6.46270 6.75319 7.17772 7.33582 8.83906 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.003832 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.691136 B = 7304.678422 C = 8253.707394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.036 4.036 3 C -0.170 4.170 4 C -0.128 4.128 5 S -0.162 6.162 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.101 4.101 10 C -0.159 4.159 11 C 0.151 3.849 12 N -0.667 5.667 13 C 0.520 3.480 14 O -0.547 6.547 15 C 0.011 3.989 16 C -0.540 4.540 17 H 0.060 0.940 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.271 1.271 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.415 0.585 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 10.711 18.413 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.145 4.145 3 C -0.228 4.228 4 C -0.186 4.186 5 S 0.081 5.919 6 C -0.243 4.243 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.122 4.122 10 C -0.181 4.181 11 C 0.051 3.949 12 N -0.311 5.311 13 C 0.311 3.689 14 O -0.424 6.424 15 C -0.029 4.029 16 C -0.578 4.578 17 H 0.078 0.922 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.792 3.208 21 H -0.197 1.197 22 H -0.198 1.198 23 H -0.196 1.196 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.192 0.808 34 H 0.180 0.820 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.253 0.747 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.510 10.034 17.904 24.571 hybrid contribution 0.252 0.378 -0.837 0.952 sum -13.259 10.412 17.067 23.989 Atomic orbital electron populations 1.22458 0.91154 1.04295 1.03593 1.23049 0.99673 0.98435 0.93353 1.22614 1.02427 0.93499 1.04245 1.21727 1.01603 1.00574 0.94733 1.85453 1.75340 1.31435 0.99664 1.21402 1.06152 1.02510 0.94187 1.21874 0.97055 0.93549 1.01930 1.21414 1.00950 1.00556 0.91739 1.21390 0.95918 0.96347 0.98536 1.21641 0.99972 0.97081 0.99406 1.17786 0.93283 0.90848 0.92997 1.43846 1.41339 1.21761 1.24139 1.21760 0.77808 0.90438 0.78883 1.90439 1.63683 1.36366 1.51961 1.19105 0.95135 0.90532 0.98081 1.21298 1.28119 1.00744 1.07641 0.92206 1.25811 0.97178 0.94526 1.01224 1.70028 1.40031 1.05203 1.41057 0.85459 0.78518 0.77804 0.79013 1.19674 1.19845 1.19602 0.91628 0.91136 0.88835 0.88561 0.92092 0.91179 0.91720 0.92220 0.88232 0.80777 0.82010 0.83666 0.85434 0.74726 0.93772 0.93652 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 7.94 71.98 0.57 -1.41 16 2 C -0.04 -0.58 0.86 -10.80 -0.01 -0.59 16 3 C -0.17 -2.54 7.93 71.98 0.57 -1.97 16 4 C -0.13 -1.69 8.39 71.98 0.60 -1.09 16 5 S -0.16 -4.16 19.50 -56.49 -1.10 -5.26 16 6 C -0.13 -3.72 5.79 22.71 0.13 -3.59 16 7 C -0.12 -2.72 6.10 22.39 0.14 -2.58 16 8 C -0.13 -2.69 10.04 22.27 0.22 -2.47 16 9 C -0.10 -2.74 10.04 22.29 0.22 -2.52 16 10 C -0.16 -5.82 8.78 22.37 0.20 -5.62 16 11 C 0.15 5.54 6.52 38.22 0.25 5.79 16 12 N -0.67 -26.72 5.25 -303.00 -1.59 -28.31 16 13 C 0.52 25.29 7.66 87.66 0.67 25.96 16 14 O -0.55 -29.21 12.39 -3.07 -0.04 -29.25 16 15 C 0.01 0.58 5.46 29.10 0.16 0.74 16 16 C -0.54 -32.21 8.92 25.60 0.23 -31.98 16 17 H 0.06 3.70 6.75 -2.91 -0.02 3.68 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.92 -54.71 13.29 21.45 0.28 -54.43 16 20 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H 0.07 0.97 5.04 -2.38 -0.01 0.96 16 25 H 0.07 0.90 8.07 -2.39 -0.02 0.88 16 26 H 0.09 0.70 7.89 -2.39 -0.02 0.68 16 27 H 0.10 0.88 7.90 -2.38 -0.02 0.87 16 28 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 29 H 0.07 1.25 4.12 -2.39 -0.01 1.24 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 33 H 0.18 2.83 3.16 -2.91 -0.01 2.82 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.13 5.51 5.43 -2.91 -0.02 5.49 16 37 H 0.42 15.07 7.49 -92.71 -0.69 14.38 16 38 H 0.04 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.05 2.45 8.14 -2.39 -0.02 2.44 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -70.57 330.23 4.37 -66.20 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.37 Total: 23.57 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 4.42 Total: -20.18 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.30 Total: -82.74 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.04 Total: -29.25 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -1.10 Total: -5.26 kcal Total: -70.57 4.37 -66.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.020 kcal (2) G-P(sol) polarization free energy of solvation -70.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds