Wall clock time and date at job start Tue Mar 31 2020 07:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.98889 * 2 1 4 4 O 1.43742 * 109.88061 * 238.91720 * 2 1 3 5 5 C 1.44380 * 106.97556 * 214.05949 * 4 2 1 6 6 C 1.54997 * 103.48939 * 40.06024 * 5 4 2 7 7 C 1.54098 * 109.87775 * 121.08196 * 2 1 3 8 8 H 1.09003 * 110.60219 * 240.18260 * 7 2 1 9 9 C 1.50699 * 110.48990 * 2.77994 * 7 2 1 10 10 O 1.21289 * 119.99704 * 87.20275 * 9 7 2 11 11 N 1.34777 * 120.00151 * 267.20473 * 9 7 2 12 12 C 1.39998 * 119.99946 * 185.08307 * 11 9 7 13 13 C 1.39373 * 119.91394 * 217.48747 * 12 11 9 14 14 C 1.38364 * 120.47078 * 179.73006 * 13 12 11 15 15 C 1.38009 * 120.28913 * 0.29319 * 14 13 12 16 16 F 1.35101 * 120.09288 * 180.02562 * 15 14 13 17 17 C 1.41002 * 119.81217 * 359.97438 * 15 14 13 18 18 C 1.41294 * 120.23306 * 179.97438 * 17 15 14 19 19 H 1.08011 * 119.99702 * 331.85598 * 18 17 15 20 20 C 1.39920 * 120.00290 * 151.85238 * 18 17 15 21 21 N 1.30860 * 119.99506 * 162.33766 * 20 18 17 22 22 Si 1.86797 * 120.00008 * 342.34262 * 20 18 17 23 23 H 1.48499 * 109.47265 * 95.41650 * 22 20 18 24 24 H 1.48501 * 109.46743 * 215.41575 * 22 20 18 25 25 H 1.48500 * 109.47323 * 335.41441 * 22 20 18 26 26 C 1.38146 * 119.91405 * 37.76957 * 12 11 9 27 27 H 1.08995 * 109.46857 * 296.75458 * 1 2 3 28 28 H 1.09000 * 109.46636 * 56.75322 * 1 2 3 29 29 H 1.08996 * 109.46527 * 176.75383 * 1 2 3 30 30 H 1.09003 * 110.61879 * 281.55993 * 5 4 2 31 31 H 1.08997 * 110.75031 * 158.62401 * 5 4 2 32 32 H 1.08995 * 110.90822 * 204.77692 * 6 5 4 33 33 H 1.09000 * 110.93625 * 81.18751 * 6 5 4 34 34 H 0.96998 * 119.99938 * 5.09104 * 11 9 7 35 35 H 1.07999 * 119.75720 * 0.02562 * 13 12 11 36 36 H 1.07999 * 119.85159 * 180.27804 * 14 13 12 37 37 H 0.97001 * 119.99325 * 180.02562 * 21 20 18 38 38 H 1.08004 * 120.14369 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2380 -1.3640 -0.7647 6 6 2.9196 -1.8914 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 2.6615 -0.0872 1.8593 9 6 0.9074 -1.3104 2.0412 10 8 0.4607 -2.4058 1.7734 11 7 0.3783 -0.5961 3.0543 12 6 -0.6141 -1.1600 3.8649 13 6 -1.6666 -0.3711 4.3256 14 6 -2.6566 -0.9178 5.1228 15 6 -2.6089 -2.2512 5.4756 16 9 -3.5780 -2.7810 6.2538 17 6 -1.5466 -3.0591 5.0208 18 6 -1.4888 -4.4252 5.3771 19 1 -1.9332 -4.7612 6.3024 20 6 -0.8559 -5.3427 4.5312 21 7 -0.4932 -6.5133 4.9902 22 14 -0.5286 -4.8964 2.7471 23 1 0.8542 -4.3716 2.6138 24 1 -0.6834 -6.1050 1.8983 25 1 -1.4964 -3.8580 2.3110 26 6 -0.5445 -2.4957 4.2107 27 1 -0.3633 0.4626 0.9176 28 1 -0.3632 0.5634 -0.8595 29 1 -0.3632 -1.0260 -0.0582 30 1 4.0686 -0.6587 -0.7356 31 1 3.4613 -2.1904 -1.4394 32 1 3.8332 -2.0223 1.2374 33 1 2.3543 -2.8221 0.6104 34 1 0.6850 0.3088 3.2217 35 1 -1.7122 0.6734 4.0546 36 1 -3.4700 -0.2983 5.4706 37 1 -0.0541 -7.1491 4.4038 38 1 0.2735 -3.1056 3.8568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178961695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:44 Heat of formation + Delta-G solvation = -104.830926 kcal Electronic energy + Delta-G solvation = -24124.712062 eV Core-core repulsion = 20460.405413 eV Total energy + Delta-G solvation = -3664.306649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.34725 -40.75974 -38.87447 -37.17726 -34.44338 -33.44922 -32.54410 -31.57166 -30.59816 -28.35049 -26.33968 -25.32306 -23.08289 -22.29593 -21.92331 -20.44446 -19.65008 -17.85884 -17.22022 -16.69721 -16.46815 -16.08174 -15.80114 -15.27934 -15.21688 -14.71326 -14.27743 -14.10698 -13.81420 -13.33272 -12.88601 -12.69180 -12.42096 -12.41256 -12.20880 -12.17247 -11.96087 -11.69449 -11.45053 -11.27517 -11.09700 -11.01391 -10.79418 -10.59424 -10.06280 -9.91934 -9.66885 -9.36291 -9.25557 -9.04572 -7.83502 -7.15981 -6.97874 -4.57134 2.17159 2.47157 2.90634 3.33637 3.36073 3.43033 3.60103 3.69519 4.15742 4.28697 4.40526 4.55582 4.72680 4.90753 5.02197 5.12017 5.20860 5.24618 5.36300 5.47798 5.59668 5.68525 5.75562 5.82448 5.85978 6.05876 6.14206 6.21736 6.45368 6.48725 6.62141 6.73140 6.97034 7.21896 7.27286 7.44038 7.55415 7.85369 7.93769 8.23061 8.44990 8.56861 8.67684 9.98046 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.006179 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.449686 B = 4530.520263 C = 5670.981194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.076 0.924 4 O -0.370 6.370 5 C 0.049 3.951 6 C -0.145 4.145 7 C -0.143 4.143 8 H 0.102 0.898 9 C 0.515 3.485 10 O -0.504 6.504 11 N -0.671 5.671 12 C 0.169 3.831 13 C -0.248 4.248 14 C -0.095 4.095 15 C -0.025 4.025 16 F -0.158 7.158 17 C 0.077 3.923 18 C -0.430 4.430 19 H 0.096 0.904 20 C 0.077 3.923 21 N -0.797 5.797 22 Si 0.941 3.059 23 H -0.254 1.254 24 H -0.303 1.303 25 H -0.244 1.244 26 C -0.215 4.215 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.401 0.599 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.288 0.712 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 12.480 -8.502 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.094 0.906 4 O -0.289 6.289 5 C -0.027 4.027 6 C -0.183 4.183 7 C -0.165 4.165 8 H 0.120 0.880 9 C 0.302 3.698 10 O -0.378 6.378 11 N -0.316 5.316 12 C 0.077 3.923 13 C -0.270 4.270 14 C -0.115 4.115 15 C -0.045 4.045 16 F -0.137 7.137 17 C 0.072 3.928 18 C -0.457 4.457 19 H 0.114 0.886 20 C -0.144 4.144 21 N -0.419 5.419 22 Si 0.769 3.231 23 H -0.181 1.181 24 H -0.232 1.232 25 H -0.167 1.167 26 C -0.237 4.237 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.236 0.764 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.740 11.363 -8.861 16.357 hybrid contribution 0.359 0.461 -0.166 0.608 sum 8.099 11.824 -9.027 16.938 Atomic orbital electron populations 1.22146 0.93192 1.04403 1.02665 1.22570 0.95696 0.94885 0.83358 0.90586 1.88906 1.39758 1.67663 1.32561 1.23535 0.87475 0.96372 0.95329 1.23195 0.99914 0.99335 0.95872 1.22819 0.96478 0.99360 0.97832 0.87984 1.20259 0.84003 0.85460 0.80061 1.90769 1.60410 1.19798 1.66851 1.43503 1.39498 1.17733 1.30857 1.17374 0.88803 0.93243 0.92909 1.19828 0.97548 0.98810 1.10777 1.20346 0.98676 0.93132 0.99324 1.17707 0.90139 0.92560 1.04110 1.91303 1.61624 1.87306 1.73439 1.17548 0.89699 0.94011 0.91549 1.19460 1.29192 0.90335 1.06682 0.88633 1.26427 0.90909 0.94214 1.02846 1.69715 1.26855 1.06943 1.38429 0.85911 0.82403 0.76345 0.78451 1.18104 1.23228 1.16744 1.20757 1.01716 0.93797 1.07389 0.90785 0.91603 0.90587 0.92115 0.88663 0.89741 0.88243 0.76401 0.87770 0.87246 0.90195 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 8.41 37.16 0.31 -1.85 16 2 C 0.09 1.08 4.05 -26.16 -0.11 0.98 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 O -0.37 -4.88 11.19 -35.23 -0.39 -5.27 16 5 C 0.05 0.51 7.72 38.21 0.29 0.81 16 6 C -0.15 -1.74 6.65 -24.72 -0.16 -1.91 16 7 C -0.14 -1.72 3.44 -90.24 -0.31 -2.03 16 8 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 9 C 0.52 8.56 4.49 -10.99 -0.05 8.51 16 10 O -0.50 -10.71 8.86 5.55 0.05 -10.67 16 11 N -0.67 -10.66 4.76 -9.90 -0.05 -10.70 16 12 C 0.17 3.46 6.19 -83.74 -0.52 2.95 16 13 C -0.25 -4.78 9.97 -39.11 -0.39 -5.17 16 14 C -0.10 -1.99 10.00 -39.62 -0.40 -2.38 16 15 C -0.02 -0.61 7.31 -38.62 -0.28 -0.89 16 16 F -0.16 -3.93 16.75 2.25 0.04 -3.89 16 17 C 0.08 2.01 5.16 -106.78 -0.55 1.46 16 18 C -0.43 -12.13 9.28 -37.79 -0.35 -12.48 16 19 H 0.10 2.84 7.95 -52.48 -0.42 2.42 16 20 C 0.08 2.10 5.42 -17.34 -0.09 2.01 16 21 N -0.80 -21.84 13.93 55.55 0.77 -21.07 16 22 Si 0.94 23.58 21.84 -169.99 -3.71 19.87 16 23 H -0.25 -6.25 5.66 56.52 0.32 -5.93 16 24 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.24 -6.51 6.61 56.52 0.37 -6.14 16 26 C -0.22 -5.24 6.00 -38.71 -0.23 -5.47 16 27 H 0.07 0.91 7.05 -51.93 -0.37 0.54 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.24 7.09 -51.93 -0.37 0.87 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.51 6.89 -51.93 -0.36 1.16 16 34 H 0.40 4.60 8.83 -40.82 -0.36 4.24 16 35 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.97 8.06 -52.49 -0.42 1.54 16 37 H 0.29 7.16 8.30 -40.82 -0.34 6.82 16 38 H 0.12 3.01 3.63 -52.48 -0.19 2.82 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -31.86 305.47 -6.21 -38.07 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.69 Total: 4.53 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.84 Total: -15.48 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.73 Total: -31.77 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.34 Total: -15.94 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -3.71 Total: 19.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.86 -6.21 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178961695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.757 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds