Wall clock time and date at job start Tue Mar 31 2020 07:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.98889 * 2 1 4 4 O 1.43742 * 109.88061 * 238.91720 * 2 1 3 5 5 C 1.44380 * 106.97556 * 214.05949 * 4 2 1 6 6 C 1.54997 * 103.48939 * 40.06024 * 5 4 2 7 7 C 1.54098 * 109.87775 * 121.08196 * 2 1 3 8 8 H 1.09003 * 110.60219 * 240.18260 * 7 2 1 9 9 C 1.50699 * 110.48990 * 2.77994 * 7 2 1 10 10 O 1.21289 * 119.99704 * 87.20275 * 9 7 2 11 11 N 1.34777 * 120.00151 * 267.20473 * 9 7 2 12 12 C 1.39998 * 119.99946 * 185.08307 * 11 9 7 13 13 C 1.39373 * 119.91394 * 217.48747 * 12 11 9 14 14 C 1.38364 * 120.47078 * 179.73006 * 13 12 11 15 15 C 1.38009 * 120.28913 * 0.29319 * 14 13 12 16 16 F 1.35101 * 120.09288 * 180.02562 * 15 14 13 17 17 C 1.41002 * 119.81217 * 359.97438 * 15 14 13 18 18 C 1.41294 * 120.23306 * 179.97438 * 17 15 14 19 19 H 1.08011 * 119.99702 * 331.85598 * 18 17 15 20 20 C 1.39920 * 120.00290 * 151.85238 * 18 17 15 21 21 N 1.30860 * 119.99506 * 162.33766 * 20 18 17 22 22 Si 1.86797 * 120.00008 * 342.34262 * 20 18 17 23 23 H 1.48499 * 109.47265 * 95.41650 * 22 20 18 24 24 H 1.48501 * 109.46743 * 215.41575 * 22 20 18 25 25 H 1.48500 * 109.47323 * 335.41441 * 22 20 18 26 26 C 1.38146 * 119.91405 * 37.76957 * 12 11 9 27 27 H 1.08995 * 109.46857 * 296.75458 * 1 2 3 28 28 H 1.09000 * 109.46636 * 56.75322 * 1 2 3 29 29 H 1.08996 * 109.46527 * 176.75383 * 1 2 3 30 30 H 1.09003 * 110.61879 * 281.55993 * 5 4 2 31 31 H 1.08997 * 110.75031 * 158.62401 * 5 4 2 32 32 H 1.08995 * 110.90822 * 204.77692 * 6 5 4 33 33 H 1.09000 * 110.93625 * 81.18751 * 6 5 4 34 34 H 0.96998 * 119.99938 * 5.09104 * 11 9 7 35 35 H 1.07999 * 119.75720 * 0.02562 * 13 12 11 36 36 H 1.07999 * 119.85159 * 180.27804 * 14 13 12 37 37 H 0.97001 * 119.99325 * 180.02562 * 21 20 18 38 38 H 1.08004 * 120.14369 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2380 -1.3640 -0.7647 6 6 2.9196 -1.8914 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 2.6615 -0.0872 1.8593 9 6 0.9074 -1.3104 2.0412 10 8 0.4607 -2.4058 1.7734 11 7 0.3783 -0.5961 3.0543 12 6 -0.6141 -1.1600 3.8649 13 6 -1.6666 -0.3711 4.3256 14 6 -2.6566 -0.9178 5.1228 15 6 -2.6089 -2.2512 5.4756 16 9 -3.5780 -2.7810 6.2538 17 6 -1.5466 -3.0591 5.0208 18 6 -1.4888 -4.4252 5.3771 19 1 -1.9332 -4.7612 6.3024 20 6 -0.8559 -5.3427 4.5312 21 7 -0.4932 -6.5133 4.9902 22 14 -0.5286 -4.8964 2.7471 23 1 0.8542 -4.3716 2.6138 24 1 -0.6834 -6.1050 1.8983 25 1 -1.4964 -3.8580 2.3110 26 6 -0.5445 -2.4957 4.2107 27 1 -0.3633 0.4626 0.9176 28 1 -0.3632 0.5634 -0.8595 29 1 -0.3632 -1.0260 -0.0582 30 1 4.0686 -0.6587 -0.7356 31 1 3.4613 -2.1904 -1.4394 32 1 3.8332 -2.0223 1.2374 33 1 2.3543 -2.8221 0.6104 34 1 0.6850 0.3088 3.2217 35 1 -1.7122 0.6734 4.0546 36 1 -3.4700 -0.2983 5.4706 37 1 -0.0541 -7.1491 4.4038 38 1 0.2735 -3.1056 3.8568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178961695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:43 Heat of formation + Delta-G solvation = -128.259806 kcal Electronic energy + Delta-G solvation = -24125.728014 eV Core-core repulsion = 20460.405413 eV Total energy + Delta-G solvation = -3665.322601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.28320 -41.96489 -40.13226 -38.76344 -36.14548 -35.22083 -33.59541 -32.49294 -32.45187 -29.97965 -27.42645 -27.17117 -24.47563 -23.57432 -23.15883 -22.07273 -20.93056 -19.68134 -18.50182 -18.23969 -17.97670 -17.46532 -16.99588 -16.81405 -16.59156 -16.09519 -16.05069 -15.75607 -15.15640 -15.01522 -14.56429 -14.03995 -13.96395 -13.75258 -13.70224 -13.41876 -13.30737 -13.24602 -13.02843 -12.67028 -12.57461 -12.24518 -12.00838 -11.96424 -11.88993 -11.65524 -11.08861 -11.01191 -10.81118 -10.54689 -9.71127 -9.03157 -8.86141 -6.64352 0.42587 0.64512 1.31813 1.35608 1.49128 1.64117 2.07622 2.10869 2.48540 2.85286 3.24765 3.36567 3.59467 3.83832 3.89171 4.05987 4.14388 4.20656 4.26336 4.34055 4.48588 4.52850 4.60696 4.66189 4.79901 4.82115 4.86323 4.90606 4.95249 5.11683 5.16850 5.21214 5.48161 5.56439 5.62600 5.70440 5.91182 6.00098 6.21155 6.49456 6.57519 6.66297 7.25944 8.01901 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.006179 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.449686 B = 4530.520263 C = 5670.981194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.119 0.881 4 O -0.398 6.398 5 C 0.052 3.948 6 C -0.152 4.152 7 C -0.134 4.134 8 H 0.149 0.851 9 C 0.510 3.490 10 O -0.555 6.555 11 N -0.656 5.656 12 C 0.172 3.828 13 C -0.210 4.210 14 C -0.089 4.089 15 C -0.053 4.053 16 F -0.168 7.168 17 C 0.054 3.946 18 C -0.477 4.477 19 H 0.058 0.942 20 C 0.051 3.949 21 N -0.838 5.838 22 Si 1.001 2.999 23 H -0.252 1.252 24 H -0.301 1.301 25 H -0.272 1.272 26 C -0.228 4.228 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.429 0.571 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.295 0.705 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.632 17.573 -9.987 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.037 3.963 3 H 0.137 0.863 4 O -0.317 6.317 5 C -0.024 4.024 6 C -0.190 4.190 7 C -0.156 4.156 8 H 0.167 0.833 9 C 0.299 3.701 10 O -0.432 6.432 11 N -0.304 5.304 12 C 0.078 3.922 13 C -0.230 4.230 14 C -0.108 4.108 15 C -0.073 4.073 16 F -0.147 7.147 17 C 0.051 3.949 18 C -0.506 4.506 19 H 0.077 0.923 20 C -0.165 4.165 21 N -0.463 5.463 22 Si 0.829 3.171 23 H -0.178 1.178 24 H -0.230 1.230 25 H -0.198 1.198 26 C -0.249 4.249 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.268 0.732 35 H 0.179 0.821 36 H 0.167 0.833 37 H 0.106 0.894 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.337 16.502 -10.343 21.598 hybrid contribution -0.190 -0.770 0.249 0.831 sum 9.147 15.731 -10.094 20.810 Atomic orbital electron populations 1.22149 0.94806 1.01800 1.03698 1.22766 0.94515 0.96568 0.82465 0.86314 1.88882 1.41119 1.68237 1.33499 1.23696 0.87491 0.97191 0.94008 1.23229 1.00322 0.97692 0.97749 1.22950 0.94758 0.99894 0.97966 0.83278 1.21185 0.84378 0.84722 0.79792 1.90732 1.61948 1.22352 1.68189 1.43412 1.38289 1.18881 1.29777 1.17515 0.90164 0.92050 0.92439 1.20518 0.94759 1.01009 1.06744 1.20842 1.00026 0.91648 0.98275 1.18160 0.90024 0.94245 1.04891 1.91271 1.61844 1.87769 1.73810 1.17747 0.90982 0.93579 0.92638 1.19338 1.32379 0.92148 1.06688 0.92329 1.26819 0.90918 0.94175 1.04589 1.69723 1.29380 1.07863 1.39368 0.85029 0.81441 0.74888 0.75706 1.17848 1.22997 1.19778 1.20773 1.01005 0.95732 1.07399 0.89856 0.90438 0.94964 0.88588 0.88443 0.87453 0.92469 0.73151 0.82121 0.83273 0.89446 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 8.41 71.98 0.61 -3.24 16 2 C 0.09 1.78 4.05 30.97 0.13 1.91 16 3 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 4 O -0.40 -9.28 11.19 -148.98 -1.67 -10.95 16 5 C 0.05 0.90 7.72 72.67 0.56 1.47 16 6 C -0.15 -3.27 6.65 31.90 0.21 -3.05 16 7 C -0.13 -2.66 3.44 -10.55 -0.04 -2.70 16 8 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 9 C 0.51 15.63 4.49 87.66 0.39 16.03 16 10 O -0.55 -23.52 8.86 -3.06 -0.03 -23.55 16 11 N -0.66 -18.06 4.76 -303.61 -1.44 -19.50 16 12 C 0.17 6.53 6.19 38.09 0.24 6.76 16 13 C -0.21 -6.93 9.97 22.57 0.23 -6.71 16 14 C -0.09 -3.37 10.00 22.25 0.22 -3.15 16 15 C -0.05 -2.60 7.31 22.89 0.17 -2.43 16 16 F -0.17 -8.57 16.75 44.97 0.75 -7.82 16 17 C 0.05 2.95 5.16 -21.26 -0.11 2.84 16 18 C -0.48 -28.92 9.28 23.43 0.22 -28.70 16 19 H 0.06 3.83 7.95 -2.90 -0.02 3.81 16 20 C 0.05 2.97 5.42 85.25 0.46 3.43 16 21 N -0.84 -49.06 13.93 21.82 0.30 -48.76 16 22 Si 1.00 52.26 21.84 68.60 1.50 53.76 16 23 H -0.25 -12.80 5.66 99.48 0.56 -12.23 16 24 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 25 H -0.27 -15.19 6.61 99.48 0.66 -14.53 16 26 C -0.23 -11.10 6.00 22.83 0.14 -10.96 16 27 H 0.08 1.69 7.05 -2.39 -0.02 1.67 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 1.02 7.09 -2.39 -0.02 1.00 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.74 6.89 -2.39 -0.02 1.73 16 34 H 0.43 7.10 8.83 -92.71 -0.82 6.28 16 35 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.30 15.61 8.30 -92.71 -0.77 14.84 16 38 H 0.10 5.37 3.63 -2.91 -0.01 5.36 16 Total: -1.00 -77.87 305.47 2.93 -74.94 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.09 Total: 10.38 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.42 Total: -28.50 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.14 Total: -68.26 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.69 Total: -34.50 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.75 Total: -7.82 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 1.50 Total: 53.76 kcal Total: -77.87 2.93 -74.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178961695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.320 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds