Wall clock time and date at job start Tue Mar 31 2020 08:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99481 * 2 1 4 4 C 1.50694 * 120.00297 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47391 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.47304 * 305.00137 * 5 4 2 7 7 C 1.53002 * 109.47054 * 65.00054 * 5 4 2 8 8 C 1.50696 * 109.47322 * 185.00191 * 5 4 2 9 9 O 1.21287 * 120.00071 * 0.02562 * 8 5 4 10 10 N 1.34776 * 120.00361 * 179.97438 * 8 5 4 11 11 C 1.40006 * 120.00549 * 174.90517 * 10 8 5 12 12 C 1.39362 * 119.91259 * 146.80922 * 11 10 8 13 13 C 1.38369 * 120.47030 * 180.25715 * 12 11 10 14 14 C 1.38009 * 120.28670 * 359.44286 * 13 12 11 15 15 F 1.35099 * 120.09790 * 180.28012 * 14 13 12 16 16 C 1.41013 * 119.80889 * 0.55063 * 14 13 12 17 17 C 1.41295 * 120.22851 * 179.70033 * 16 14 13 18 18 H 1.08004 * 120.00037 * 330.78020 * 17 16 14 19 19 C 1.39918 * 119.99906 * 150.77094 * 17 16 14 20 20 N 1.30846 * 120.00175 * 344.41220 * 19 17 16 21 21 Si 1.86804 * 120.00092 * 164.40945 * 19 17 16 22 22 H 1.48501 * 109.46945 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47232 * 119.99992 * 21 19 17 24 24 H 1.48504 * 109.47075 * 240.00450 * 21 19 17 25 25 C 1.38147 * 119.90736 * 326.78823 * 11 10 8 26 26 H 1.08994 * 109.47311 * 269.99933 * 1 2 3 27 27 H 1.08996 * 109.47205 * 30.00441 * 1 2 3 28 28 H 1.09002 * 109.47153 * 150.00307 * 1 2 3 29 29 H 1.09004 * 109.47019 * 60.00053 * 4 2 1 30 30 H 1.08996 * 109.47407 * 300.00422 * 4 2 1 31 31 H 1.08998 * 109.47061 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.46917 * 300.00470 * 7 5 4 33 33 H 1.09005 * 109.46998 * 59.99895 * 7 5 4 34 34 H 0.97000 * 119.99656 * 354.90583 * 10 8 5 35 35 H 1.08002 * 119.76661 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.85634 * 179.72427 * 13 12 11 37 37 H 0.97009 * 120.00430 * 179.97438 * 20 19 17 38 38 H 1.07999 * 120.14698 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7648 -1.0254 0.0011 6 1 4.0146 -0.3797 -0.8408 7 6 4.1543 -0.3326 1.3085 8 6 4.5174 -2.3252 -0.1222 9 8 3.9103 -3.3721 -0.2030 10 7 5.8649 -2.3242 -0.1437 11 6 6.5659 -3.5362 -0.1505 12 6 7.7782 -3.6340 -0.8309 13 6 8.4780 -4.8275 -0.8497 14 6 7.9875 -5.9325 -0.1840 15 9 8.6766 -7.0944 -0.2002 16 6 6.7619 -5.8469 0.5082 17 6 6.2483 -6.9745 1.1874 18 1 6.4778 -7.9688 0.8336 19 6 5.4426 -6.8029 2.3184 20 7 5.4086 -5.6457 2.9280 21 14 4.4154 -8.2260 2.9580 22 1 4.6301 -9.4173 2.0978 23 1 4.8208 -8.5424 4.3510 24 1 2.9790 -7.8498 2.9337 25 6 6.0541 -4.6317 0.5175 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9972 -1.8770 -0.8892 30 1 1.9972 -1.8763 0.8907 31 1 5.2260 -0.1338 1.3090 32 1 3.6099 0.6075 1.3976 33 1 3.9044 -0.9784 2.1504 34 1 6.3492 -1.4838 -0.1543 35 1 8.1722 -2.7733 -1.3510 36 1 9.4144 -4.8934 -1.3837 37 1 4.8497 -5.5265 3.7119 38 1 5.1149 -4.5551 1.0452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181254196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:50 Heat of formation + Delta-G solvation = -113.416894 kcal Electronic energy + Delta-G solvation = -23177.704369 eV Core-core repulsion = 19513.025404 eV Total energy + Delta-G solvation = -3664.678964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.18775 -40.25621 -39.24963 -37.14175 -34.35076 -34.10044 -33.19001 -30.91864 -29.81133 -28.11011 -27.14934 -25.41775 -23.90072 -21.75468 -20.80145 -19.64980 -19.22866 -17.81508 -17.03392 -16.04232 -16.00700 -15.74942 -15.39325 -15.11401 -14.82300 -14.75969 -14.23289 -13.95469 -13.67890 -13.34879 -12.95579 -12.70935 -12.51185 -12.48444 -12.35105 -11.89109 -11.80370 -11.75855 -11.63516 -11.23188 -11.17396 -11.13532 -10.91911 -10.49281 -10.29367 -9.77813 -9.72684 -9.39570 -9.20103 -8.86264 -7.56009 -6.93072 -6.75743 -4.43099 1.82019 2.44304 2.74064 3.07022 3.08583 3.14769 3.29075 3.51886 3.92998 4.10058 4.53433 4.59325 4.90515 4.94407 5.08895 5.17464 5.30645 5.42273 5.48071 5.65907 5.69888 5.72809 5.88324 5.93204 6.05253 6.07514 6.24102 6.36830 6.72687 6.87638 6.92843 7.14160 7.37075 7.41024 7.51207 7.66081 7.97784 8.06351 8.21350 8.44749 8.74077 8.76890 8.82578 10.13905 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.004796 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.632171 B = 5837.318017 C = 7253.093128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.357 3.643 3 O -0.461 6.461 4 C -0.155 4.155 5 C -0.099 4.099 6 H 0.099 0.901 7 C -0.149 4.149 8 C 0.509 3.491 9 O -0.516 6.516 10 N -0.664 5.664 11 C 0.136 3.864 12 C -0.240 4.240 13 C -0.109 4.109 14 C -0.038 4.038 15 F -0.163 7.163 16 C 0.097 3.903 17 C -0.452 4.452 18 H 0.084 0.916 19 C 0.078 3.922 20 N -0.788 5.788 21 Si 0.912 3.088 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.133 4.133 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.281 0.719 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 10.484 -2.372 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.233 3.767 3 O -0.335 6.335 4 C -0.193 4.193 5 C -0.121 4.121 6 H 0.117 0.883 7 C -0.207 4.207 8 C 0.295 3.705 9 O -0.391 6.391 10 N -0.308 5.308 11 C 0.043 3.957 12 C -0.261 4.261 13 C -0.128 4.128 14 C -0.058 4.058 15 F -0.143 7.143 16 C 0.093 3.907 17 C -0.481 4.481 18 H 0.102 0.898 19 C -0.141 4.141 20 N -0.413 5.413 21 Si 0.736 3.264 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.154 4.154 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.233 0.767 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.092 0.908 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.723 10.377 -2.200 13.121 hybrid contribution -0.048 -0.399 0.334 0.522 sum -7.770 9.979 -1.866 12.784 Atomic orbital electron populations 1.22288 0.94473 1.04752 1.04699 1.24663 0.91999 0.90241 0.69751 1.90369 1.71846 1.35275 1.36035 1.21987 0.93921 0.97023 1.06383 1.21077 0.94523 0.95075 1.01397 0.88342 1.21890 1.02191 1.01248 0.95347 1.20532 0.82431 0.90934 0.76590 1.90750 1.67747 1.33180 1.47421 1.43384 1.06088 1.08272 1.73048 1.17604 0.92959 0.85977 0.99119 1.19849 0.98712 0.97609 1.09942 1.20252 0.99433 0.92435 1.00718 1.17920 0.94079 0.82198 1.11636 1.91266 1.79045 1.47911 1.96030 1.17499 0.88562 0.93961 0.90633 1.19511 1.25627 0.94156 1.08774 0.89777 1.25880 0.95240 0.97064 0.95906 1.69801 1.31292 1.24521 1.15683 0.86191 0.79716 0.81565 0.78915 1.18212 1.19878 1.19539 1.21159 1.01612 0.91498 1.01143 0.88649 0.89853 0.89493 0.87367 0.87399 0.92029 0.90421 0.92108 0.76681 0.88233 0.87748 0.90790 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.43 10.25 36.01 0.37 -1.07 16 2 C 0.36 3.66 6.98 -29.04 -0.20 3.46 16 3 O -0.46 -5.97 14.71 6.00 0.09 -5.89 16 4 C -0.16 -1.80 4.45 -27.89 -0.12 -1.92 16 5 C -0.10 -1.31 2.37 -91.77 -0.22 -1.53 16 6 H 0.10 1.18 7.96 -51.93 -0.41 0.77 16 7 C -0.15 -1.85 8.84 37.16 0.33 -1.52 16 8 C 0.51 9.11 6.89 -10.99 -0.08 9.04 16 9 O -0.52 -11.40 13.59 5.55 0.08 -11.32 16 10 N -0.66 -12.00 5.20 -9.90 -0.05 -12.05 16 11 C 0.14 3.07 6.28 -83.74 -0.53 2.55 16 12 C -0.24 -5.11 9.96 -39.11 -0.39 -5.50 16 13 C -0.11 -2.46 10.00 -39.62 -0.40 -2.86 16 14 C -0.04 -0.98 7.31 -38.61 -0.28 -1.26 16 15 F -0.16 -4.20 16.76 2.25 0.04 -4.16 16 16 C 0.10 2.68 5.53 -106.78 -0.59 2.09 16 17 C -0.45 -12.48 8.73 -37.79 -0.33 -12.81 16 18 H 0.08 2.29 7.80 -52.48 -0.41 1.88 16 19 C 0.08 2.00 5.15 -17.34 -0.09 1.91 16 20 N -0.79 -20.61 11.15 55.55 0.62 -19.99 16 21 Si 0.91 19.23 29.59 -169.99 -5.03 14.20 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.13 -3.49 7.26 -38.71 -0.28 -3.77 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.11 1.23 7.96 -51.93 -0.41 0.82 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 32 H 0.08 0.93 5.96 -51.93 -0.31 0.62 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.40 5.68 8.40 -40.82 -0.34 5.34 16 35 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 38 H 0.14 3.94 4.76 -52.49 -0.25 3.69 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -31.79 327.91 -6.75 -38.55 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.63 Total: 8.91 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.81 Total: -13.19 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.57 Total: -32.04 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.16 Total: -17.21 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.04 Total: -4.16 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.79 -6.75 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181254196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.872 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds