Wall clock time and date at job start Tue Mar 31 2020 08:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99481 * 2 1 4 4 C 1.50694 * 120.00297 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47391 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.47304 * 305.00137 * 5 4 2 7 7 C 1.53002 * 109.47054 * 65.00054 * 5 4 2 8 8 C 1.50696 * 109.47322 * 185.00191 * 5 4 2 9 9 O 1.21287 * 120.00071 * 0.02562 * 8 5 4 10 10 N 1.34776 * 120.00361 * 179.97438 * 8 5 4 11 11 C 1.40006 * 120.00549 * 174.90517 * 10 8 5 12 12 C 1.39362 * 119.91259 * 146.80922 * 11 10 8 13 13 C 1.38369 * 120.47030 * 180.25715 * 12 11 10 14 14 C 1.38009 * 120.28670 * 359.44286 * 13 12 11 15 15 F 1.35099 * 120.09790 * 180.28012 * 14 13 12 16 16 C 1.41013 * 119.80889 * 0.55063 * 14 13 12 17 17 C 1.41295 * 120.22851 * 179.70033 * 16 14 13 18 18 H 1.08004 * 120.00037 * 330.78020 * 17 16 14 19 19 C 1.39918 * 119.99906 * 150.77094 * 17 16 14 20 20 N 1.30846 * 120.00175 * 344.41220 * 19 17 16 21 21 Si 1.86804 * 120.00092 * 164.40945 * 19 17 16 22 22 H 1.48501 * 109.46945 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47232 * 119.99992 * 21 19 17 24 24 H 1.48504 * 109.47075 * 240.00450 * 21 19 17 25 25 C 1.38147 * 119.90736 * 326.78823 * 11 10 8 26 26 H 1.08994 * 109.47311 * 269.99933 * 1 2 3 27 27 H 1.08996 * 109.47205 * 30.00441 * 1 2 3 28 28 H 1.09002 * 109.47153 * 150.00307 * 1 2 3 29 29 H 1.09004 * 109.47019 * 60.00053 * 4 2 1 30 30 H 1.08996 * 109.47407 * 300.00422 * 4 2 1 31 31 H 1.08998 * 109.47061 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.46917 * 300.00470 * 7 5 4 33 33 H 1.09005 * 109.46998 * 59.99895 * 7 5 4 34 34 H 0.97000 * 119.99656 * 354.90583 * 10 8 5 35 35 H 1.08002 * 119.76661 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.85634 * 179.72427 * 13 12 11 37 37 H 0.97009 * 120.00430 * 179.97438 * 20 19 17 38 38 H 1.07999 * 120.14698 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7648 -1.0254 0.0011 6 1 4.0146 -0.3797 -0.8408 7 6 4.1543 -0.3326 1.3085 8 6 4.5174 -2.3252 -0.1222 9 8 3.9103 -3.3721 -0.2030 10 7 5.8649 -2.3242 -0.1437 11 6 6.5659 -3.5362 -0.1505 12 6 7.7782 -3.6340 -0.8309 13 6 8.4780 -4.8275 -0.8497 14 6 7.9875 -5.9325 -0.1840 15 9 8.6766 -7.0944 -0.2002 16 6 6.7619 -5.8469 0.5082 17 6 6.2483 -6.9745 1.1874 18 1 6.4778 -7.9688 0.8336 19 6 5.4426 -6.8029 2.3184 20 7 5.4086 -5.6457 2.9280 21 14 4.4154 -8.2260 2.9580 22 1 4.6301 -9.4173 2.0978 23 1 4.8208 -8.5424 4.3510 24 1 2.9790 -7.8498 2.9337 25 6 6.0541 -4.6317 0.5175 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9972 -1.8770 -0.8892 30 1 1.9972 -1.8763 0.8907 31 1 5.2260 -0.1338 1.3090 32 1 3.6099 0.6075 1.3976 33 1 3.9044 -0.9784 2.1504 34 1 6.3492 -1.4838 -0.1543 35 1 8.1722 -2.7733 -1.3510 36 1 9.4144 -4.8934 -1.3837 37 1 4.8497 -5.5265 3.7119 38 1 5.1149 -4.5551 1.0452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181254196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:49 Heat of formation + Delta-G solvation = -132.742732 kcal Electronic energy + Delta-G solvation = -23178.542400 eV Core-core repulsion = 19513.025404 eV Total energy + Delta-G solvation = -3665.516996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.17898 -41.56723 -40.39281 -38.88374 -36.13161 -35.32451 -34.88093 -31.75998 -31.64573 -29.77734 -28.10668 -27.34447 -25.21129 -23.54999 -22.46561 -21.00804 -20.32070 -19.58314 -18.32450 -17.96357 -17.73109 -17.07790 -16.61808 -16.53541 -16.16713 -15.92162 -15.83768 -15.74894 -15.10044 -14.61591 -14.53452 -14.23249 -13.81123 -13.73113 -13.52411 -13.50317 -13.31562 -13.01999 -12.92062 -12.81852 -12.67340 -12.32277 -12.18046 -12.16937 -12.04329 -11.60547 -11.22618 -10.90439 -10.65004 -10.45949 -9.48357 -8.79678 -8.61037 -6.45850 0.63088 0.88871 1.01058 1.32997 1.40932 1.48849 1.73455 2.17224 2.17902 2.64554 3.19081 3.49508 3.54994 3.91009 3.96973 4.04154 4.24376 4.31044 4.35362 4.59481 4.62714 4.66896 4.74459 4.79228 4.91068 4.97303 5.02060 5.07893 5.09265 5.19982 5.22494 5.25919 5.61382 5.73452 5.77056 6.02773 6.18323 6.50212 6.56260 6.62559 6.77623 6.86053 7.31593 8.25953 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.004796 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.632171 B = 5837.318017 C = 7253.093128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.367 3.633 3 O -0.488 6.488 4 C -0.159 4.159 5 C -0.088 4.088 6 H 0.118 0.882 7 C -0.144 4.144 8 C 0.506 3.494 9 O -0.560 6.560 10 N -0.656 5.656 11 C 0.139 3.861 12 C -0.222 4.222 13 C -0.104 4.104 14 C -0.071 4.071 15 F -0.170 7.170 16 C 0.065 3.935 17 C -0.497 4.497 18 H 0.070 0.930 19 C 0.038 3.962 20 N -0.817 5.817 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.258 1.258 24 H -0.261 1.261 25 C -0.159 4.159 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.420 0.580 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.289 0.711 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 12.425 -2.883 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.245 3.755 3 O -0.365 6.365 4 C -0.196 4.196 5 C -0.110 4.110 6 H 0.136 0.864 7 C -0.201 4.201 8 C 0.294 3.706 9 O -0.438 6.438 10 N -0.301 5.301 11 C 0.046 3.954 12 C -0.243 4.243 13 C -0.124 4.124 14 C -0.092 4.092 15 F -0.150 7.150 16 C 0.062 3.938 17 C -0.527 4.527 18 H 0.088 0.912 19 C -0.177 4.177 20 N -0.443 5.443 21 Si 0.801 3.199 22 H -0.184 1.184 23 H -0.183 1.183 24 H -0.186 1.186 25 C -0.180 4.180 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.258 0.742 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.100 0.900 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.256 12.367 -2.718 15.116 hybrid contribution 0.191 -0.877 0.396 0.981 sum -8.065 11.490 -2.321 14.229 Atomic orbital electron populations 1.22290 0.91513 1.05894 1.05963 1.24833 0.93383 0.88847 0.68420 1.90367 1.72670 1.35817 1.37658 1.22040 0.93120 0.98170 1.06309 1.21088 0.94883 0.92424 1.02571 0.86401 1.21862 1.03009 1.01066 0.94204 1.21425 0.82228 0.92028 0.74875 1.90739 1.68567 1.35351 1.49137 1.43349 1.06379 1.07725 1.72649 1.17758 0.93466 0.86649 0.97573 1.20367 0.97368 0.98536 1.08037 1.20670 1.00525 0.91561 0.99597 1.18289 0.94382 0.83196 1.13310 1.91230 1.79026 1.48501 1.96215 1.17860 0.89643 0.94759 0.91582 1.19660 1.28528 0.93802 1.10673 0.91169 1.26690 0.95693 0.99890 0.95437 1.69834 1.31991 1.26216 1.16219 0.85175 0.78099 0.77907 0.78679 1.18447 1.18275 1.18595 1.21041 1.01365 0.92718 1.02891 0.87155 0.89091 0.87989 0.87271 0.87904 0.91009 0.89559 0.93429 0.74153 0.83527 0.84305 0.90023 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 10.25 71.24 0.73 -1.54 16 2 C 0.37 6.80 6.98 29.10 0.20 7.00 16 3 O -0.49 -11.67 14.71 -1.46 -0.02 -11.69 16 4 C -0.16 -3.49 4.45 29.85 0.13 -3.36 16 5 C -0.09 -2.20 2.37 -11.54 -0.03 -2.23 16 6 H 0.12 2.53 7.96 -2.38 -0.02 2.51 16 7 C -0.14 -3.33 8.84 71.98 0.64 -2.70 16 8 C 0.51 17.79 6.89 87.66 0.60 18.39 16 9 O -0.56 -25.21 13.59 -3.05 -0.04 -25.25 16 10 N -0.66 -22.63 5.20 -303.61 -1.58 -24.21 16 11 C 0.14 6.18 6.28 38.08 0.24 6.42 16 12 C -0.22 -8.85 9.96 22.57 0.22 -8.63 16 13 C -0.10 -4.54 10.00 22.25 0.22 -4.32 16 14 C -0.07 -3.77 7.31 22.90 0.17 -3.60 16 15 F -0.17 -9.02 16.76 44.97 0.75 -8.27 16 16 C 0.07 3.74 5.53 -21.26 -0.12 3.62 16 17 C -0.50 -28.96 8.73 23.43 0.20 -28.76 16 18 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 19 C 0.04 2.05 5.15 85.25 0.44 2.49 16 20 N -0.82 -44.26 11.15 21.82 0.24 -44.02 16 21 Si 0.98 40.56 29.59 68.60 2.03 42.59 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 C -0.16 -8.57 7.26 22.83 0.17 -8.40 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 29 H 0.11 2.39 7.96 -2.38 -0.02 2.37 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 1.49 7.69 -2.39 -0.02 1.47 16 32 H 0.09 1.90 5.96 -2.39 -0.01 1.89 16 33 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.42 10.72 8.40 -92.71 -0.78 9.94 16 35 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.14 5.03 8.06 -2.91 -0.02 5.00 16 37 H 0.29 14.08 8.30 -92.70 -0.77 13.31 16 38 H 0.12 6.95 4.76 -2.91 -0.01 6.94 16 Total: -1.00 -72.60 327.91 5.53 -67.07 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.32 Total: 29.38 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.82 Total: -25.60 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.33 Total: -68.23 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.06 Total: -36.94 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.75 Total: -8.27 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -72.60 5.53 -67.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181254196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.676 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds