Wall clock time and date at job start Tue Mar 31 2020 08:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20763 * 120.00694 * 2 1 4 4 C 1.50705 * 120.00194 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.46888 * 330.00006 * 4 2 1 6 6 C 1.52995 * 109.47274 * 89.99921 * 4 2 1 7 7 C 1.53000 * 109.47317 * 210.00329 * 4 2 1 8 8 C 1.50701 * 109.46928 * 174.99661 * 7 4 2 9 9 O 1.21290 * 120.00210 * 0.02562 * 8 7 4 10 10 N 1.34776 * 119.99584 * 179.97438 * 8 7 4 11 11 C 1.40011 * 119.99598 * 175.44920 * 10 8 7 12 12 C 1.39367 * 119.91637 * 325.90431 * 11 10 8 13 13 C 1.38357 * 120.47584 * 180.02562 * 12 11 10 14 14 C 1.38010 * 120.28647 * 359.97438 * 13 12 11 15 15 F 1.35099 * 120.09821 * 179.97438 * 14 13 12 16 16 C 1.41011 * 119.81066 * 359.97438 * 14 13 12 17 17 C 1.41291 * 120.22941 * 179.97438 * 16 14 13 18 18 H 1.08009 * 119.99922 * 334.90038 * 17 16 14 19 19 C 1.39921 * 120.00408 * 155.18081 * 17 16 14 20 20 N 1.30853 * 120.00418 * 160.46749 * 19 17 16 21 21 Si 1.86803 * 119.99705 * 340.46556 * 19 17 16 22 22 H 1.48501 * 109.46812 * 95.25203 * 21 19 17 23 23 H 1.48497 * 109.47176 * 215.25139 * 21 19 17 24 24 H 1.48492 * 109.47054 * 335.25451 * 21 19 17 25 25 C 1.38152 * 119.90937 * 146.13510 * 11 10 8 26 26 H 1.08999 * 109.47261 * 240.00219 * 1 2 3 27 27 H 1.09003 * 109.46817 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47124 * 120.00107 * 1 2 3 29 29 H 1.08999 * 109.47152 * 300.00628 * 6 4 2 30 30 H 1.09001 * 109.47093 * 60.00212 * 6 4 2 31 31 H 1.09000 * 109.47457 * 180.02562 * 6 4 2 32 32 H 1.08998 * 109.47249 * 54.99943 * 7 4 2 33 33 H 1.08999 * 109.47029 * 294.99695 * 7 4 2 34 34 H 0.96994 * 120.00672 * 355.45685 * 10 8 7 35 35 H 1.07999 * 119.75863 * 359.97438 * 12 11 10 36 36 H 1.08002 * 119.86240 * 179.97438 * 13 12 11 37 37 H 0.96999 * 120.00156 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.13857 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6714 -2.0645 0.5148 6 6 2.5155 -1.7475 -1.4417 7 6 3.5974 -1.1219 0.7218 8 6 4.2960 -2.4527 0.8306 9 8 3.7760 -3.4496 0.3756 10 7 5.4990 -2.5350 1.4326 11 6 6.1047 -3.7835 1.6187 12 6 5.3190 -4.9061 1.8737 13 6 5.9054 -6.1453 2.0600 14 6 7.2770 -6.2832 1.9946 15 9 7.8456 -7.4950 2.1776 16 6 8.0834 -5.1557 1.7362 17 6 9.4886 -5.2867 1.6679 18 1 9.9814 -6.0954 2.1871 19 6 10.2423 -4.3653 0.9324 20 7 11.5243 -4.2375 1.1614 21 14 9.4182 -3.3176 -0.3763 22 1 9.0441 -2.0033 0.2050 23 1 10.3575 -3.1093 -1.5075 24 1 8.1981 -4.0073 -0.8667 25 6 7.4798 -3.8986 1.5538 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 1.5631 -1.8780 -1.9555 30 1 3.1046 -0.9880 -1.9558 31 1 3.0602 -2.6916 -1.4413 32 1 3.4198 -0.7221 1.7202 33 1 4.2220 -0.4286 0.1586 34 1 5.9452 -1.7294 1.7370 35 1 4.2449 -4.8077 1.9271 36 1 5.2871 -7.0086 2.2574 37 1 12.0466 -3.5985 0.6518 38 1 8.0884 -3.0276 1.3603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184340047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:03 Heat of formation + Delta-G solvation = -111.525369 kcal Electronic energy + Delta-G solvation = -22945.104613 eV Core-core repulsion = 19280.507672 eV Total energy + Delta-G solvation = -3664.596942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.37146 -40.43919 -39.47826 -37.49170 -34.68784 -34.12812 -33.49188 -30.68643 -30.50043 -29.00916 -27.25440 -25.30951 -23.99176 -22.08888 -21.32098 -19.82417 -19.31158 -17.68763 -17.43434 -16.58658 -16.22044 -15.97520 -15.36305 -15.26057 -15.12551 -14.91389 -14.46612 -14.15771 -13.89471 -13.48543 -13.40738 -12.97242 -12.81129 -12.56273 -12.42458 -12.31289 -12.07217 -11.96737 -11.81261 -11.47485 -11.33785 -11.21427 -10.93270 -10.69375 -10.28862 -9.87796 -9.85510 -9.58830 -9.26202 -9.16598 -7.89134 -7.15658 -7.12170 -4.62560 1.68494 2.13078 2.44868 2.86785 2.98885 3.12989 3.22710 3.30273 3.84439 3.90992 4.31480 4.40681 4.73505 4.77825 4.92527 5.07638 5.12772 5.19460 5.27589 5.44011 5.48659 5.63323 5.68929 5.69326 5.83865 5.88917 6.18038 6.26032 6.35836 6.45346 6.56783 6.91936 7.19213 7.22915 7.32596 7.43672 7.46673 7.78422 7.96351 8.18846 8.36722 8.51893 8.59432 9.88797 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020883 B = 0.004119 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.470603 B = 6795.560808 C = 7725.507258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.360 3.640 3 O -0.459 6.459 4 C -0.123 4.123 5 H 0.106 0.894 6 C -0.147 4.147 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.518 6.518 10 N -0.671 5.671 11 C 0.172 3.828 12 C -0.215 4.215 13 C -0.098 4.098 14 C -0.020 4.020 15 F -0.157 7.157 16 C 0.081 3.919 17 C -0.431 4.431 18 H 0.098 0.902 19 C 0.085 3.915 20 N -0.793 5.793 21 Si 0.914 3.086 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.241 1.241 25 C -0.252 4.252 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.404 0.596 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.289 0.711 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 8.577 -2.213 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.236 3.764 3 O -0.333 6.333 4 C -0.143 4.143 5 H 0.124 0.876 6 C -0.204 4.204 7 C -0.172 4.172 8 C 0.297 3.703 9 O -0.394 6.394 10 N -0.314 5.314 11 C 0.079 3.921 12 C -0.236 4.236 13 C -0.118 4.118 14 C -0.041 4.041 15 F -0.136 7.136 16 C 0.077 3.923 17 C -0.459 4.459 18 H 0.116 0.884 19 C -0.136 4.136 20 N -0.416 5.416 21 Si 0.741 3.259 22 H -0.197 1.197 23 H -0.217 1.217 24 H -0.165 1.165 25 C -0.274 4.274 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.239 0.761 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.034 8.481 -2.559 18.318 hybrid contribution 0.196 0.700 -0.304 0.788 sum -15.838 9.180 -2.863 18.529 Atomic orbital electron populations 1.22332 0.94259 1.04837 1.04754 1.24712 0.92091 0.89970 0.69661 1.90407 1.72139 1.35136 1.35585 1.21467 0.96129 0.96999 0.99661 0.87605 1.21851 1.02462 1.03679 0.92404 1.21579 0.96689 0.95856 1.03044 1.20552 0.81233 0.91006 0.77497 1.90681 1.65033 1.37827 1.45861 1.43573 1.20067 1.08870 1.58930 1.17421 0.91425 0.84173 0.99039 1.20087 0.98545 0.91210 1.13786 1.20468 0.92590 0.97328 1.01372 1.17716 0.90478 0.80259 1.15611 1.91305 1.85830 1.42587 1.93899 1.17407 0.93586 0.89499 0.91858 1.19448 0.89538 1.10860 1.26010 0.88449 1.26204 0.94729 0.95315 0.97373 1.69696 1.07973 1.29454 1.34494 0.86281 0.80297 0.79756 0.79561 1.19723 1.21654 1.16453 1.20496 0.92090 0.97160 1.17622 0.88785 0.90089 0.88815 0.92258 0.92709 0.88955 0.88597 0.88035 0.76090 0.86601 0.87200 0.90064 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 10.24 36.00 0.37 -0.87 16 2 C 0.36 3.38 6.32 -29.03 -0.18 3.20 16 3 O -0.46 -5.84 17.00 6.00 0.10 -5.73 16 4 C -0.12 -1.23 2.31 -91.77 -0.21 -1.44 16 5 H 0.11 0.99 7.94 -51.93 -0.41 0.58 16 6 C -0.15 -1.55 8.92 37.16 0.33 -1.21 16 7 C -0.13 -1.46 4.69 -27.88 -0.13 -1.59 16 8 C 0.51 7.75 7.29 -10.99 -0.08 7.67 16 9 O -0.52 -9.32 11.66 5.55 0.06 -9.26 16 10 N -0.67 -11.06 5.34 -9.89 -0.05 -11.11 16 11 C 0.17 3.59 6.26 -83.73 -0.52 3.07 16 12 C -0.22 -4.55 8.66 -39.12 -0.34 -4.89 16 13 C -0.10 -2.13 10.00 -39.62 -0.40 -2.53 16 14 C -0.02 -0.49 7.31 -38.61 -0.28 -0.78 16 15 F -0.16 -3.88 16.71 2.25 0.04 -3.84 16 16 C 0.08 2.06 5.22 -106.78 -0.56 1.50 16 17 C -0.43 -11.64 9.30 -37.79 -0.35 -11.99 16 18 H 0.10 2.80 7.89 -52.48 -0.41 2.39 16 19 C 0.08 2.17 5.41 -17.34 -0.09 2.08 16 20 N -0.79 -20.55 13.93 55.55 0.77 -19.78 16 21 Si 0.91 20.30 24.43 -169.99 -4.15 16.15 16 22 H -0.27 -5.63 6.64 56.52 0.38 -5.25 16 23 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.24 -5.64 6.79 56.52 0.38 -5.26 16 25 C -0.25 -5.82 7.08 -38.71 -0.27 -6.10 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.22 5.95 -51.93 -0.31 0.91 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.10 8.02 -51.93 -0.42 0.68 16 34 H 0.40 5.44 8.82 -40.82 -0.36 5.08 16 35 H 0.12 2.34 6.43 -52.49 -0.34 2.00 16 36 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.11 2.45 4.18 -52.49 -0.22 2.23 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -30.51 323.03 -5.69 -36.20 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.61 Total: 6.39 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -2.72 Total: -13.88 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.72 Total: -30.89 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.17 Total: -14.99 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.15 Total: 16.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.51 -5.69 -36.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184340047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.328 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds