Wall clock time and date at job start Tue Mar 31 2020 08:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20763 * 120.00694 * 2 1 4 4 C 1.50705 * 120.00194 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.46888 * 330.00006 * 4 2 1 6 6 C 1.52995 * 109.47274 * 89.99921 * 4 2 1 7 7 C 1.53000 * 109.47317 * 210.00329 * 4 2 1 8 8 C 1.50701 * 109.46928 * 174.99661 * 7 4 2 9 9 O 1.21290 * 120.00210 * 0.02562 * 8 7 4 10 10 N 1.34776 * 119.99584 * 179.97438 * 8 7 4 11 11 C 1.40011 * 119.99598 * 175.44920 * 10 8 7 12 12 C 1.39367 * 119.91637 * 325.90431 * 11 10 8 13 13 C 1.38357 * 120.47584 * 180.02562 * 12 11 10 14 14 C 1.38010 * 120.28647 * 359.97438 * 13 12 11 15 15 F 1.35099 * 120.09821 * 179.97438 * 14 13 12 16 16 C 1.41011 * 119.81066 * 359.97438 * 14 13 12 17 17 C 1.41291 * 120.22941 * 179.97438 * 16 14 13 18 18 H 1.08009 * 119.99922 * 334.90038 * 17 16 14 19 19 C 1.39921 * 120.00408 * 155.18081 * 17 16 14 20 20 N 1.30853 * 120.00418 * 160.46749 * 19 17 16 21 21 Si 1.86803 * 119.99705 * 340.46556 * 19 17 16 22 22 H 1.48501 * 109.46812 * 95.25203 * 21 19 17 23 23 H 1.48497 * 109.47176 * 215.25139 * 21 19 17 24 24 H 1.48492 * 109.47054 * 335.25451 * 21 19 17 25 25 C 1.38152 * 119.90937 * 146.13510 * 11 10 8 26 26 H 1.08999 * 109.47261 * 240.00219 * 1 2 3 27 27 H 1.09003 * 109.46817 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47124 * 120.00107 * 1 2 3 29 29 H 1.08999 * 109.47152 * 300.00628 * 6 4 2 30 30 H 1.09001 * 109.47093 * 60.00212 * 6 4 2 31 31 H 1.09000 * 109.47457 * 180.02562 * 6 4 2 32 32 H 1.08998 * 109.47249 * 54.99943 * 7 4 2 33 33 H 1.08999 * 109.47029 * 294.99695 * 7 4 2 34 34 H 0.96994 * 120.00672 * 355.45685 * 10 8 7 35 35 H 1.07999 * 119.75863 * 359.97438 * 12 11 10 36 36 H 1.08002 * 119.86240 * 179.97438 * 13 12 11 37 37 H 0.96999 * 120.00156 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.13857 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6714 -2.0645 0.5148 6 6 2.5155 -1.7475 -1.4417 7 6 3.5974 -1.1219 0.7218 8 6 4.2960 -2.4527 0.8306 9 8 3.7760 -3.4496 0.3756 10 7 5.4990 -2.5350 1.4326 11 6 6.1047 -3.7835 1.6187 12 6 5.3190 -4.9061 1.8737 13 6 5.9054 -6.1453 2.0600 14 6 7.2770 -6.2832 1.9946 15 9 7.8456 -7.4950 2.1776 16 6 8.0834 -5.1557 1.7362 17 6 9.4886 -5.2867 1.6679 18 1 9.9814 -6.0954 2.1871 19 6 10.2423 -4.3653 0.9324 20 7 11.5243 -4.2375 1.1614 21 14 9.4182 -3.3176 -0.3763 22 1 9.0441 -2.0033 0.2050 23 1 10.3575 -3.1093 -1.5075 24 1 8.1981 -4.0073 -0.8667 25 6 7.4798 -3.8986 1.5538 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 1.5631 -1.8780 -1.9555 30 1 3.1046 -0.9880 -1.9558 31 1 3.0602 -2.6916 -1.4413 32 1 3.4198 -0.7221 1.7202 33 1 4.2220 -0.4286 0.1586 34 1 5.9452 -1.7294 1.7370 35 1 4.2449 -4.8077 1.9271 36 1 5.2871 -7.0086 2.2574 37 1 12.0466 -3.5985 0.6518 38 1 8.0884 -3.0276 1.3603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184340047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:02 Heat of formation + Delta-G solvation = -130.802451 kcal Electronic energy + Delta-G solvation = -22945.940530 eV Core-core repulsion = 19280.507672 eV Total energy + Delta-G solvation = -3665.432859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.28735 -41.60381 -40.49743 -39.11334 -36.18042 -35.25011 -35.14740 -32.50795 -31.26924 -30.28800 -28.41967 -27.19704 -24.89140 -23.87612 -22.76042 -21.33258 -20.08696 -19.47050 -18.74396 -18.24383 -17.76898 -17.14460 -16.72262 -16.46073 -16.36131 -16.06066 -15.98042 -15.70825 -15.30224 -14.89309 -14.65003 -14.44312 -14.04598 -13.88637 -13.75794 -13.52351 -13.36569 -13.08357 -12.96969 -12.84117 -12.73414 -12.48417 -12.17422 -12.11395 -11.99589 -11.71221 -11.09903 -11.05551 -10.81133 -10.43230 -9.73260 -9.03555 -8.86691 -6.62368 0.42403 0.62837 0.98483 1.17062 1.32225 1.43599 1.63181 2.03162 2.07250 2.48722 3.12678 3.27946 3.56724 3.86705 3.88027 3.96025 4.12072 4.23515 4.43902 4.48364 4.58121 4.61834 4.63385 4.70389 4.74391 4.79539 4.83475 4.92096 5.09570 5.14256 5.21782 5.36577 5.47221 5.58143 5.60478 5.70550 5.99480 6.18670 6.52006 6.53646 6.55507 6.63395 7.17892 8.04505 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020883 B = 0.004119 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.470603 B = 6795.560808 C = 7725.507258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.369 3.631 3 O -0.497 6.497 4 C -0.124 4.124 5 H 0.116 0.884 6 C -0.145 4.145 7 C -0.124 4.124 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.668 5.668 11 C 0.180 3.820 12 C -0.205 4.205 13 C -0.090 4.090 14 C -0.054 4.054 15 F -0.167 7.167 16 C 0.066 3.934 17 C -0.472 4.472 18 H 0.057 0.943 19 C 0.053 3.947 20 N -0.831 5.831 21 Si 0.967 3.033 22 H -0.242 1.242 23 H -0.275 1.275 24 H -0.261 1.261 25 C -0.256 4.256 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.421 0.579 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.300 0.700 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.595 10.724 -2.826 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.247 3.753 3 O -0.373 6.373 4 C -0.144 4.144 5 H 0.135 0.865 6 C -0.203 4.203 7 C -0.164 4.164 8 C 0.301 3.699 9 O -0.421 6.421 10 N -0.314 5.314 11 C 0.086 3.914 12 C -0.226 4.226 13 C -0.110 4.110 14 C -0.074 4.074 15 F -0.146 7.146 16 C 0.062 3.938 17 C -0.501 4.501 18 H 0.075 0.925 19 C -0.164 4.164 20 N -0.455 5.455 21 Si 0.790 3.210 22 H -0.167 1.167 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.277 4.277 26 H 0.132 0.868 27 H 0.099 0.901 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.258 0.742 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.111 0.889 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.370 10.654 -3.156 22.331 hybrid contribution 1.029 -0.021 -0.076 1.032 sum -18.341 10.633 -3.232 21.445 Atomic orbital electron populations 1.22358 0.91354 1.05495 1.06566 1.24997 0.93509 0.88782 0.68030 1.90412 1.73111 1.36146 1.37611 1.21531 0.95760 0.97889 0.99178 0.86546 1.21795 1.03247 1.02015 0.93199 1.21609 0.96908 0.93119 1.04731 1.21269 0.80332 0.92220 0.76036 1.90677 1.65482 1.39281 1.46658 1.43621 1.20647 1.07865 1.59246 1.17482 0.90773 0.86133 0.96985 1.20420 0.99418 0.90954 1.11830 1.20784 0.91606 0.98818 0.99745 1.18062 0.91702 0.79998 1.17676 1.91268 1.86179 1.43011 1.94182 1.17596 0.93137 0.90926 0.92174 1.19359 0.90783 1.11349 1.28584 0.92503 1.26847 0.95115 0.96061 0.98427 1.69707 1.09023 1.30892 1.35888 0.85498 0.78754 0.79263 0.77535 1.16663 1.20170 1.18485 1.20589 0.93271 0.96417 1.17450 0.86752 0.90100 0.86959 0.90074 0.93097 0.91673 0.86306 0.87430 0.74174 0.84827 0.84380 0.88934 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 10.24 71.23 0.73 -0.90 16 2 C 0.37 5.69 6.32 29.10 0.18 5.87 16 3 O -0.50 -11.34 17.00 -1.46 -0.02 -11.36 16 4 C -0.12 -2.05 2.31 -11.54 -0.03 -2.08 16 5 H 0.12 1.72 7.94 -2.39 -0.02 1.70 16 6 C -0.15 -2.68 8.92 71.98 0.64 -2.03 16 7 C -0.12 -2.33 4.69 29.85 0.14 -2.19 16 8 C 0.51 13.94 7.29 87.66 0.64 14.58 16 9 O -0.54 -18.03 11.66 -3.06 -0.04 -18.07 16 10 N -0.67 -19.99 5.34 -303.60 -1.62 -21.61 16 11 C 0.18 7.15 6.26 38.09 0.24 7.39 16 12 C -0.21 -8.19 8.66 22.57 0.20 -7.99 16 13 C -0.09 -3.81 10.00 22.24 0.22 -3.58 16 14 C -0.05 -2.69 7.31 22.90 0.17 -2.52 16 15 F -0.17 -8.58 16.71 44.97 0.75 -7.83 16 16 C 0.07 3.41 5.22 -21.26 -0.11 3.30 16 17 C -0.47 -26.87 9.30 23.43 0.22 -26.65 16 18 H 0.06 3.56 7.89 -2.91 -0.02 3.53 16 19 C 0.05 2.78 5.41 85.25 0.46 3.24 16 20 N -0.83 -44.41 13.93 21.82 0.30 -44.10 16 21 Si 0.97 41.48 24.43 68.60 1.68 43.16 16 22 H -0.24 -9.17 6.64 99.48 0.66 -8.51 16 23 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.26 -11.91 6.79 99.48 0.68 -11.23 16 25 C -0.26 -11.59 7.08 22.83 0.16 -11.43 16 26 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 28 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.59 5.95 -2.39 -0.01 1.58 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 1.97 8.02 -2.39 -0.02 1.95 16 34 H 0.42 9.88 8.82 -92.71 -0.82 9.06 16 35 H 0.13 4.92 6.43 -2.91 -0.02 4.90 16 36 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.30 14.17 8.30 -92.71 -0.77 13.40 16 38 H 0.12 5.04 4.18 -2.91 -0.01 5.03 16 Total: -1.00 -68.53 323.03 5.12 -63.40 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.21 Total: 21.40 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 3.86 Total: -24.99 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.32 Total: -65.71 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 0.75 Total: -7.83 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.68 Total: 43.16 kcal Total: -68.53 5.12 -63.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184340047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.400 kcal (2) G-P(sol) polarization free energy of solvation -68.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds