Wall clock time and date at job start Tue Mar 31 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46951 * 2 1 4 4 C 1.53005 * 109.47306 * 240.00026 * 2 1 3 5 5 O 1.45204 * 109.47370 * 119.99881 * 2 1 3 6 6 C 1.34637 * 116.99949 * 60.00025 * 5 2 1 7 7 O 1.21514 * 119.99914 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00311 * 179.97438 * 6 5 2 9 9 C 1.47015 * 125.64969 * 179.97438 * 8 6 5 10 10 C 1.54329 * 107.27183 * 178.97892 * 9 8 6 11 11 H 1.08995 * 110.72258 * 219.26650 * 10 9 8 12 12 O 1.42900 * 110.71758 * 96.16776 * 10 9 8 13 13 C 1.34924 * 116.99778 * 93.84766 * 12 10 9 14 14 H 1.08005 * 119.99986 * 359.97438 * 13 12 10 15 15 C 1.38633 * 120.00265 * 179.97438 * 13 12 10 16 16 N 1.31588 * 119.99667 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00461 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47485 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.46497 * 299.99635 * 17 15 13 20 20 H 1.48500 * 109.47264 * 59.99454 * 17 15 13 21 21 C 1.55156 * 103.09785 * 337.71830 * 10 9 8 22 22 F 1.39900 * 111.00398 * 153.66384 * 21 10 9 23 23 F 1.39899 * 111.00753 * 277.51738 * 21 10 9 24 24 C 1.47426 * 125.64309 * 0.04639 * 8 6 5 25 25 H 1.09002 * 109.46822 * 299.99615 * 1 2 3 26 26 H 1.08991 * 109.47176 * 60.00430 * 1 2 3 27 27 H 1.08996 * 109.47043 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46631 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46648 * 299.99988 * 3 2 1 30 30 H 1.08990 * 109.47050 * 60.00052 * 3 2 1 31 31 H 1.08996 * 109.46934 * 299.99901 * 4 2 1 32 32 H 1.09003 * 109.46699 * 59.99841 * 4 2 1 33 33 H 1.08993 * 109.47434 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.88318 * 59.56420 * 9 8 6 35 35 H 1.09004 * 110.01433 * 298.47053 * 9 8 6 36 36 H 0.97001 * 119.99805 * 359.97438 * 16 15 13 37 37 H 1.08996 * 110.36453 * 322.92572 * 24 8 6 38 38 H 1.08996 * 110.37015 * 85.25292 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0682 -2.6657 2.4167 9 6 1.7486 -4.0710 2.7071 10 6 2.4596 -4.4394 4.0264 11 1 2.8649 -5.4500 3.9770 12 8 1.5677 -4.3079 5.1352 13 6 0.9059 -5.4176 5.5238 14 1 1.0621 -6.3501 5.0018 15 6 0.0253 -5.3608 6.5930 16 7 -0.1647 -4.2247 7.2292 17 14 -0.8905 -6.8973 7.1315 18 1 -1.7633 -6.5735 8.2884 19 1 -1.7227 -7.3968 6.0076 20 1 0.0868 -7.9431 7.5268 21 6 3.6022 -3.3934 4.1140 22 9 3.9738 -3.1667 5.4436 23 9 4.7041 -3.7889 3.3480 24 6 2.9176 -2.1401 3.5009 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 2.1111 -4.7080 1.9004 35 1 0.6714 -4.1930 2.8200 36 1 0.3118 -3.4271 6.9503 37 1 3.6665 -1.4577 3.0991 38 1 2.3074 -1.6364 4.2506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:34 Heat of formation + Delta-G solvation = -207.971630 kcal Electronic energy + Delta-G solvation = -25072.282887 eV Core-core repulsion = 20972.734497 eV Total energy + Delta-G solvation = -4099.548390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.58050 -46.75763 -40.73032 -38.47846 -36.75490 -35.54121 -34.03044 -31.92380 -29.71671 -28.53342 -27.52736 -27.46315 -24.52590 -23.76471 -21.76411 -20.88621 -19.49755 -18.47698 -18.06681 -17.14911 -16.83032 -16.32536 -16.14088 -15.90635 -14.98925 -14.65964 -14.49267 -14.29337 -13.84437 -13.78695 -13.60264 -13.49764 -13.22795 -13.03609 -12.76118 -12.61624 -12.34247 -12.20225 -12.05002 -11.99006 -11.94832 -11.48242 -11.36094 -10.99130 -10.67232 -10.41637 -10.33287 -10.18419 -10.10323 -9.93747 -9.41734 -8.71036 -8.19614 -6.45917 -3.82659 2.05147 2.88961 3.34096 3.38633 3.56131 3.59536 3.80794 3.87195 4.37568 4.55258 4.61190 4.65051 4.75484 4.79574 5.09224 5.32022 5.32863 5.36321 5.37373 5.41666 5.48573 5.55686 5.64908 5.74315 5.75891 5.82412 5.86024 6.06129 6.16295 6.19959 6.21892 6.28065 6.44824 7.45981 7.49510 8.36601 8.63821 9.20399 9.74511 11.00779 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.004636 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.433499 B = 6038.355902 C = 6746.253568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.673 3.327 7 O -0.564 6.564 8 N -0.594 5.594 9 C 0.104 3.896 10 C 0.067 3.933 11 H 0.091 0.909 12 O -0.281 6.281 13 C -0.465 4.465 14 H 0.062 0.938 15 C 0.004 3.996 16 N -0.902 5.902 17 Si 1.092 2.908 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.287 1.287 21 C 0.269 3.731 22 F -0.170 7.170 23 F -0.188 7.188 24 C 0.084 3.916 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.277 0.723 37 H 0.098 0.902 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 7.852 -13.271 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.429 3.571 7 O -0.453 6.453 8 N -0.335 5.335 9 C -0.017 4.017 10 C 0.005 3.995 11 H 0.109 0.891 12 O -0.195 6.195 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.539 5.539 17 Si 0.918 3.082 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.213 1.213 21 C 0.232 3.768 22 F -0.151 7.151 23 F -0.169 7.169 24 C -0.040 4.040 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.276 7.385 -12.436 15.082 hybrid contribution 1.440 0.395 -1.292 1.975 sum 5.716 7.780 -13.728 16.783 Atomic orbital electron populations 1.22521 0.93930 1.05256 1.02441 1.22074 0.94497 0.91477 0.82128 1.21852 1.02176 0.92562 1.03097 1.22519 1.01500 1.03600 0.96419 1.86306 1.71548 1.23448 1.46384 1.17312 0.78642 0.80325 0.80835 1.90894 1.41249 1.70516 1.42648 1.46787 1.52803 1.13142 1.20737 1.22826 1.03313 0.78507 0.97060 1.23463 0.89786 0.97242 0.88981 0.89104 1.85426 1.55012 1.35413 1.43670 1.21775 1.26094 0.87456 1.18985 0.92046 1.26143 0.96518 1.04471 0.92715 1.70573 1.41894 1.00762 1.40689 0.83158 0.75958 0.72476 0.76626 1.20176 1.21299 1.21310 1.22032 0.83102 0.96789 0.74923 1.93044 1.92419 1.95318 1.34323 1.92996 1.56420 1.92077 1.75367 1.23062 0.95040 0.94496 0.91442 0.92023 0.91223 0.89285 0.91519 0.90206 0.91382 0.89331 0.91216 0.92214 0.90386 0.88642 0.91288 0.88394 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.37 37.16 0.31 -1.91 16 2 C 0.13 1.63 1.13 -90.61 -0.10 1.53 16 3 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 4 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 5 O -0.36 -5.46 9.42 -40.32 -0.38 -5.84 16 6 C 0.67 11.74 7.93 54.05 0.43 12.16 16 7 O -0.56 -10.59 12.21 -19.28 -0.24 -10.82 16 8 N -0.59 -10.51 3.33 -175.98 -0.59 -11.10 16 9 C 0.10 1.95 6.63 -3.07 -0.02 1.93 16 10 C 0.07 1.38 3.18 -24.89 -0.08 1.30 16 11 H 0.09 1.79 7.85 -51.93 -0.41 1.38 16 12 O -0.28 -7.32 8.55 -16.49 -0.14 -7.46 16 13 C -0.47 -12.86 9.82 30.88 0.30 -12.56 16 14 H 0.06 1.60 7.66 -52.48 -0.40 1.20 16 15 C 0.00 0.10 5.49 -17.51 -0.10 0.01 16 16 N -0.90 -27.55 13.70 55.48 0.76 -26.79 16 17 Si 1.09 24.46 29.92 -169.99 -5.09 19.37 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.27 4.93 2.51 -24.31 -0.06 4.87 16 22 F -0.17 -3.46 16.87 2.25 0.04 -3.42 16 23 F -0.19 -3.22 17.24 2.25 0.04 -3.18 16 24 C 0.08 1.39 6.56 -2.26 -0.01 1.37 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.10 1.98 8.07 -51.93 -0.42 1.56 16 36 H 0.28 8.66 7.97 -40.82 -0.33 8.33 16 37 H 0.10 1.37 8.04 -51.93 -0.42 0.95 16 38 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -31.86 326.05 -4.55 -36.41 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.18 Total: 1.90 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 1.31 Total: 6.03 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.17 Total: -37.89 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.76 Total: -24.13 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.08 Total: -6.61 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.86 -4.55 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.563 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds