Wall clock time and date at job start Tue Mar 31 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46951 * 2 1 4 4 C 1.53005 * 109.47306 * 240.00026 * 2 1 3 5 5 O 1.45204 * 109.47370 * 119.99881 * 2 1 3 6 6 C 1.34637 * 116.99949 * 60.00025 * 5 2 1 7 7 O 1.21514 * 119.99914 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00311 * 179.97438 * 6 5 2 9 9 C 1.47015 * 125.64969 * 179.97438 * 8 6 5 10 10 C 1.54329 * 107.27183 * 178.97892 * 9 8 6 11 11 H 1.08995 * 110.72258 * 219.26650 * 10 9 8 12 12 O 1.42900 * 110.71758 * 96.16776 * 10 9 8 13 13 C 1.34924 * 116.99778 * 93.84766 * 12 10 9 14 14 H 1.08005 * 119.99986 * 359.97438 * 13 12 10 15 15 C 1.38633 * 120.00265 * 179.97438 * 13 12 10 16 16 N 1.31588 * 119.99667 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00461 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47485 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.46497 * 299.99635 * 17 15 13 20 20 H 1.48500 * 109.47264 * 59.99454 * 17 15 13 21 21 C 1.55156 * 103.09785 * 337.71830 * 10 9 8 22 22 F 1.39900 * 111.00398 * 153.66384 * 21 10 9 23 23 F 1.39899 * 111.00753 * 277.51738 * 21 10 9 24 24 C 1.47426 * 125.64309 * 0.04639 * 8 6 5 25 25 H 1.09002 * 109.46822 * 299.99615 * 1 2 3 26 26 H 1.08991 * 109.47176 * 60.00430 * 1 2 3 27 27 H 1.08996 * 109.47043 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46631 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46648 * 299.99988 * 3 2 1 30 30 H 1.08990 * 109.47050 * 60.00052 * 3 2 1 31 31 H 1.08996 * 109.46934 * 299.99901 * 4 2 1 32 32 H 1.09003 * 109.46699 * 59.99841 * 4 2 1 33 33 H 1.08993 * 109.47434 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.88318 * 59.56420 * 9 8 6 35 35 H 1.09004 * 110.01433 * 298.47053 * 9 8 6 36 36 H 0.97001 * 119.99805 * 359.97438 * 16 15 13 37 37 H 1.08996 * 110.36453 * 322.92572 * 24 8 6 38 38 H 1.08996 * 110.37015 * 85.25292 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0682 -2.6657 2.4167 9 6 1.7486 -4.0710 2.7071 10 6 2.4596 -4.4394 4.0264 11 1 2.8649 -5.4500 3.9770 12 8 1.5677 -4.3079 5.1352 13 6 0.9059 -5.4176 5.5238 14 1 1.0621 -6.3501 5.0018 15 6 0.0253 -5.3608 6.5930 16 7 -0.1647 -4.2247 7.2292 17 14 -0.8905 -6.8973 7.1315 18 1 -1.7633 -6.5735 8.2884 19 1 -1.7227 -7.3968 6.0076 20 1 0.0868 -7.9431 7.5268 21 6 3.6022 -3.3934 4.1140 22 9 3.9738 -3.1667 5.4436 23 9 4.7041 -3.7889 3.3480 24 6 2.9176 -2.1401 3.5009 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 2.1111 -4.7080 1.9004 35 1 0.6714 -4.1930 2.8200 36 1 0.3118 -3.4271 6.9503 37 1 3.6665 -1.4577 3.0991 38 1 2.3074 -1.6364 4.2506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:33 Heat of formation + Delta-G solvation = -228.436381 kcal Electronic energy + Delta-G solvation = -25073.170305 eV Core-core repulsion = 20972.734497 eV Total energy + Delta-G solvation = -4100.435808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.09541 -48.28941 -42.00037 -39.97345 -38.26146 -37.13755 -35.10149 -33.95368 -31.30700 -30.01555 -28.38690 -28.30363 -26.47992 -25.38722 -23.07779 -22.39461 -20.70758 -20.41284 -19.44145 -18.75058 -18.20259 -17.67105 -17.56931 -17.36062 -16.60142 -16.03262 -15.92470 -15.70348 -15.44350 -15.26721 -15.19371 -14.79886 -14.62361 -14.52525 -14.20792 -13.79377 -13.64028 -13.38001 -13.12876 -12.93974 -12.90115 -12.73917 -12.55635 -12.41159 -12.37425 -12.17292 -11.90745 -11.78094 -11.45695 -11.36246 -11.24027 -10.30689 -10.13586 -8.69405 -6.03640 0.76671 1.53076 1.54742 1.65765 1.83082 2.09759 2.30375 2.51722 2.59764 3.03012 3.19510 3.23696 3.51016 3.72239 3.77267 3.85643 3.92005 4.07044 4.15223 4.32952 4.39812 4.52925 4.58970 4.60293 4.64931 4.74878 4.78914 4.83077 4.86402 5.11355 5.26631 5.30260 5.33086 5.34546 6.09485 6.38307 7.03311 7.08082 7.67801 8.77902 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.004636 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.433499 B = 6038.355902 C = 6746.253568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.120 3.880 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.362 6.362 6 C 0.673 3.327 7 O -0.581 6.581 8 N -0.600 5.600 9 C 0.115 3.885 10 C 0.056 3.944 11 H 0.099 0.901 12 O -0.313 6.313 13 C -0.466 4.466 14 H 0.073 0.927 15 C -0.054 4.054 16 N -0.935 5.935 17 Si 1.139 2.861 18 H -0.282 1.282 19 H -0.266 1.266 20 H -0.265 1.265 21 C 0.276 3.724 22 F -0.183 7.183 23 F -0.177 7.177 24 C 0.092 3.908 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.257 0.743 37 H 0.130 0.870 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 8.205 -14.835 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.085 3.915 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.277 6.277 6 C 0.429 3.571 7 O -0.471 6.471 8 N -0.341 5.341 9 C -0.006 4.006 10 C -0.005 4.005 11 H 0.117 0.883 12 O -0.228 6.228 13 C -0.544 4.544 14 H 0.091 0.909 15 C -0.248 4.248 16 N -0.574 5.574 17 Si 0.958 3.042 18 H -0.207 1.207 19 H -0.191 1.191 20 H -0.189 1.189 21 C 0.239 3.761 22 F -0.164 7.164 23 F -0.157 7.157 24 C -0.032 4.032 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.148 0.852 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.963 7.755 -14.042 16.792 hybrid contribution 1.308 0.342 -0.951 1.653 sum 6.271 8.097 -14.993 18.157 Atomic orbital electron populations 1.22496 0.94198 1.03484 1.03735 1.22579 0.94582 0.93020 0.81367 1.21890 1.02608 0.90083 1.04466 1.22474 1.01823 1.02067 0.97214 1.86329 1.71421 1.21968 1.47992 1.17396 0.78291 0.81038 0.80374 1.90895 1.41872 1.71146 1.43202 1.46818 1.53186 1.12881 1.21229 1.22547 1.01508 0.79897 0.96696 1.23720 0.89909 0.98670 0.88185 0.88347 1.85368 1.56181 1.35427 1.45837 1.22190 1.25474 0.88198 1.18508 0.90926 1.27902 0.97438 1.06487 0.92984 1.70721 1.43368 1.01099 1.42245 0.82607 0.75433 0.69485 0.76696 1.20704 1.19078 1.18950 1.21915 0.82782 0.96840 0.74611 1.93021 1.92501 1.95362 1.35497 1.93019 1.55746 1.92069 1.74906 1.23064 0.95277 0.93877 0.91020 0.92380 0.88310 0.92466 0.90866 0.87400 0.91445 0.92261 0.88480 0.91614 0.88173 0.91217 0.93451 0.85208 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 8.37 71.98 0.60 -3.56 16 2 C 0.12 2.67 1.13 -10.79 -0.01 2.66 16 3 C -0.13 -1.95 8.85 71.98 0.64 -1.31 16 4 C -0.18 -3.69 8.37 71.98 0.60 -3.09 16 5 O -0.36 -10.47 9.42 -55.47 -0.52 -11.00 16 6 C 0.67 23.12 7.93 129.79 1.03 24.15 16 7 O -0.58 -21.89 12.21 19.80 0.24 -21.65 16 8 N -0.60 -20.95 3.33 -941.10 -3.13 -24.08 16 9 C 0.12 4.31 6.63 86.73 0.58 4.88 16 10 C 0.06 2.30 3.18 31.78 0.10 2.41 16 11 H 0.10 3.83 7.85 -2.39 -0.02 3.81 16 12 O -0.31 -16.64 8.55 -81.93 -0.70 -17.34 16 13 C -0.47 -25.97 9.82 67.91 0.67 -25.30 16 14 H 0.07 3.76 7.66 -2.91 -0.02 3.74 16 15 C -0.05 -3.09 5.49 84.82 0.47 -2.63 16 16 N -0.94 -58.59 13.70 21.61 0.30 -58.30 16 17 Si 1.14 48.76 29.92 68.60 2.05 50.81 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 C 0.28 9.93 2.51 32.16 0.08 10.01 16 22 F -0.18 -7.42 16.87 44.97 0.76 -6.66 16 23 F -0.18 -5.76 17.24 44.97 0.78 -4.98 16 24 C 0.09 2.94 6.56 87.03 0.57 3.51 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.07 2.96 8.07 -2.39 -0.02 2.94 16 36 H 0.26 16.73 7.97 -92.71 -0.74 15.99 16 37 H 0.13 3.34 8.04 -2.39 -0.02 3.32 16 38 H 0.10 3.36 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -70.22 326.05 6.19 -64.03 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.10 Total: 17.43 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.32 Total: 11.74 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.83 Total: -82.38 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -0.98 Total: -49.98 kcal Atomic # 9 Polarization: -13.18 SS G_CDS: 1.53 Total: -11.65 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal Total: -70.22 6.19 -64.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.407 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds