Wall clock time and date at job start Tue Mar 31 2020 07:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46684 * 2 1 4 4 O 1.42893 * 109.47173 * 239.99619 * 2 1 3 5 5 C 1.35681 * 117.00193 * 84.56573 * 4 2 1 6 6 C 1.39309 * 119.81681 * 174.97423 * 5 4 2 7 7 C 1.36446 * 120.17938 * 179.71928 * 6 5 4 8 8 C 1.40829 * 119.81444 * 0.27508 * 7 6 5 9 9 C 1.41218 * 120.17975 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00056 * 205.93340 * 9 8 7 11 11 C 1.39883 * 119.99834 * 25.93380 * 9 8 7 12 12 N 1.30890 * 120.00194 * 14.84644 * 11 9 8 13 13 Si 1.86801 * 120.00182 * 194.83939 * 11 9 8 14 14 H 1.48504 * 109.46965 * 60.00058 * 13 11 9 15 15 H 1.48498 * 109.47494 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46914 * 300.00711 * 13 11 9 17 17 C 1.40833 * 119.63923 * 0.02562 * 8 7 6 18 18 C 1.36437 * 119.81217 * 359.97438 * 17 8 7 19 19 C 1.50706 * 109.47110 * 119.99122 * 2 1 3 20 20 C 1.37967 * 120.07179 * 94.72635 * 19 2 1 21 21 C 1.38340 * 120.14675 * 179.74856 * 20 19 2 22 22 C 1.38382 * 120.30695 * 0.55083 * 21 20 19 23 23 C 1.37930 * 120.15022 * 359.70799 * 22 21 20 24 24 C 1.39611 * 120.07707 * 275.00572 * 19 2 1 25 25 C 1.43200 * 120.15262 * 359.97438 * 24 19 2 26 26 N 3.56121 * 90.44844 * 45.93661 * 2 1 3 27 27 H 1.09008 * 109.46841 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47344 * 300.00330 * 1 2 3 29 29 H 1.08996 * 109.47325 * 60.00573 * 1 2 3 30 30 H 1.07991 * 119.90753 * 359.97438 * 6 5 4 31 31 H 1.07998 * 120.08813 * 180.29920 * 7 6 5 32 32 H 0.96992 * 120.00187 * 180.02562 * 12 11 9 33 33 H 1.08005 * 120.09293 * 179.97438 * 17 8 7 34 34 H 1.08011 * 119.90236 * 180.02562 * 18 17 8 35 35 H 1.07997 * 119.92595 * 0.02562 * 20 19 2 36 36 H 1.08001 * 119.84768 * 180.26012 * 21 20 19 37 37 H 1.08007 * 119.92680 * 179.72637 * 22 21 20 38 38 H 1.08002 * 120.07608 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1037 0.0590 -2.3045 6 6 2.6593 -0.5091 -3.4488 7 6 2.7556 0.2191 -4.5986 8 6 2.2969 1.5504 -4.6248 9 6 2.3923 2.3109 -5.8109 10 1 2.4497 3.3881 -5.7584 11 6 2.4125 1.6691 -7.0536 12 7 2.0559 0.4132 -7.1474 13 14 2.9483 2.6042 -8.5793 14 1 4.3420 3.0851 -8.4012 15 1 2.8812 1.7058 -9.7597 16 1 2.0472 3.7656 -8.7898 17 6 1.7424 2.1190 -3.4618 18 6 1.6533 1.3772 -2.3202 19 6 2.0324 -0.7102 1.2306 20 6 2.3556 -2.0502 1.1719 21 6 2.8218 -2.7025 2.2993 22 6 2.9565 -2.0198 3.4955 23 6 2.6320 -0.6813 3.5696 24 6 2.1662 -0.0152 2.4340 25 6 1.8275 1.3744 2.5035 26 7 1.5579 2.4766 2.5589 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.0108 -1.5299 -3.4268 31 1 3.1821 -0.2243 -5.4862 32 1 2.0702 -0.0320 -8.0090 33 1 1.3887 3.1394 -3.4736 34 1 1.2280 1.8117 -1.4275 35 1 2.2486 -2.5901 0.2427 36 1 3.0773 -3.7505 2.2469 37 1 3.3169 -2.5362 4.3730 38 1 2.7380 -0.1496 4.5036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:04 Heat of formation + Delta-G solvation = 33.768063 kcal Electronic energy + Delta-G solvation = -21755.455637 eV Core-core repulsion = 18527.928316 eV Total energy + Delta-G solvation = -3227.527321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15706 -38.69784 -36.55501 -36.49816 -33.57326 -32.71632 -31.44718 -29.98028 -29.13784 -29.00326 -25.19037 -24.14059 -23.65095 -21.98137 -20.86276 -20.15221 -18.80506 -17.44104 -17.16931 -16.31294 -15.37651 -15.16868 -14.90056 -14.78357 -14.36645 -14.02961 -13.98287 -13.54313 -13.24888 -12.95776 -12.88126 -12.57220 -12.55955 -12.29887 -12.06805 -11.82554 -11.71003 -11.60996 -11.24075 -11.14029 -10.97228 -10.70011 -10.61377 -10.04476 -9.84981 -9.34104 -9.13802 -9.08045 -8.94029 -7.65791 -7.03071 -6.71370 -4.27899 0.58522 1.12577 2.56817 2.77279 2.84246 2.93661 3.07709 3.10619 3.20646 3.67153 3.72600 3.85926 3.95345 4.56603 4.62175 4.72325 4.80903 5.13837 5.17470 5.30791 5.31342 5.51195 5.65629 5.68475 5.80505 5.91346 6.04887 6.05233 6.17818 6.22536 6.27918 6.32434 6.62889 6.71366 6.96777 7.10291 7.18165 7.37242 7.44426 7.54184 7.77638 7.99134 8.19344 8.40788 8.62999 8.89405 8.96635 10.23077 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.003292 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.358076 B = 8502.938591 C = 9074.160866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 H 0.076 0.924 4 O -0.315 6.315 5 C -0.008 4.008 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.089 3.911 9 C -0.463 4.463 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.802 5.802 13 Si 0.909 3.091 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.267 1.267 17 C -0.196 4.196 18 C -0.168 4.168 19 C -0.027 4.027 20 C -0.094 4.094 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.073 4.073 24 C -0.027 4.027 25 C 0.251 3.749 26 N -0.412 5.412 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.280 0.720 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -7.362 15.702 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.064 3.936 3 H 0.094 0.906 4 O -0.231 6.231 5 C -0.051 4.051 6 C -0.137 4.137 7 C -0.151 4.151 8 C 0.087 3.913 9 C -0.493 4.493 10 H 0.094 0.906 11 C -0.142 4.142 12 N -0.429 5.429 13 Si 0.734 3.266 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.191 1.191 17 C -0.215 4.215 18 C -0.186 4.186 19 C -0.029 4.029 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.144 4.144 23 C -0.093 4.093 24 C -0.030 4.030 25 C -0.064 4.064 26 N -0.087 5.087 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.508 -6.020 15.617 16.745 hybrid contribution 0.147 0.230 -0.734 0.784 sum 0.655 -5.790 14.883 15.983 Atomic orbital electron populations 1.22314 0.94379 1.03295 1.02823 1.20849 0.94091 0.95635 0.83058 0.90609 1.85828 1.83109 1.38066 1.16086 1.18537 1.09195 0.91383 0.85935 1.19825 1.03307 0.99037 0.91556 1.21018 1.02348 0.95582 0.96161 1.17598 0.89278 0.92342 0.92097 1.19446 1.45063 0.94687 0.90143 0.90646 1.25865 0.92558 0.94955 1.00847 1.69803 1.34612 1.11414 1.27037 0.86357 0.80297 0.80078 0.79900 1.18909 1.20370 1.19128 1.20601 1.07256 0.99459 0.94215 1.20439 1.05798 0.94079 0.98323 1.19868 0.96199 0.94403 0.92475 1.21083 0.97402 0.93312 0.99376 1.21458 0.96681 1.00374 0.92445 1.21087 1.00943 0.93901 0.98446 1.21080 0.96762 0.94756 0.96710 1.15795 1.06482 0.85666 0.95104 1.25691 0.93946 0.92808 0.93940 1.81262 1.08612 1.11637 1.07209 0.91291 0.92171 0.90653 0.88406 0.85467 0.90901 0.88759 0.88778 0.83887 0.85121 0.85039 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.14 37.16 0.34 -2.15 16 2 C 0.12 1.93 1.96 -27.88 -0.05 1.87 16 3 H 0.08 1.32 5.42 -51.92 -0.28 1.04 16 4 O -0.31 -6.00 8.63 -18.74 -0.16 -6.16 16 5 C -0.01 -0.17 6.62 -38.79 -0.26 -0.43 16 6 C -0.12 -2.78 9.92 -39.83 -0.40 -3.18 16 7 C -0.13 -3.39 8.63 -39.25 -0.34 -3.73 16 8 C 0.09 2.37 5.57 -106.80 -0.59 1.78 16 9 C -0.46 -12.32 9.05 -37.84 -0.34 -12.67 16 10 H 0.08 1.93 7.89 -52.49 -0.41 1.52 16 11 C 0.07 1.86 5.19 -17.34 -0.09 1.77 16 12 N -0.80 -20.66 10.87 55.54 0.60 -20.06 16 13 Si 0.91 18.75 29.58 -169.99 -5.03 13.72 16 14 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 15 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 17 C -0.20 -4.84 9.74 -39.25 -0.38 -5.23 16 18 C -0.17 -3.80 8.15 -39.83 -0.32 -4.12 16 19 C -0.03 -0.35 5.10 -104.21 -0.53 -0.88 16 20 C -0.09 -1.05 9.34 -39.64 -0.37 -1.42 16 21 C -0.09 -0.76 10.04 -39.49 -0.40 -1.15 16 22 C -0.13 -0.93 10.03 -39.64 -0.40 -1.32 16 23 C -0.07 -0.63 9.76 -39.17 -0.38 -1.01 16 24 C -0.03 -0.32 5.73 -106.93 -0.61 -0.93 16 25 C 0.25 3.41 13.69 -22.47 -0.31 3.10 16 26 N -0.41 -6.42 18.54 41.84 0.78 -5.64 16 27 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 29 H 0.07 1.22 6.90 -51.93 -0.36 0.86 16 30 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.13 3.35 6.15 -52.49 -0.32 3.03 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 33 H 0.09 2.22 8.06 -52.48 -0.42 1.79 16 34 H 0.09 1.93 5.40 -52.48 -0.28 1.65 16 35 H 0.14 1.67 7.35 -52.49 -0.39 1.29 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -28.80 330.38 -8.40 -37.20 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.13 Total: 5.65 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -5.44 Total: -29.69 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 1.38 Total: -25.70 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.16 Total: -6.16 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.80 -8.40 -37.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.969 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds