Wall clock time and date at job start Tue Mar 31 2020 07:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46684 * 2 1 4 4 O 1.42893 * 109.47173 * 239.99619 * 2 1 3 5 5 C 1.35681 * 117.00193 * 84.56573 * 4 2 1 6 6 C 1.39309 * 119.81681 * 174.97423 * 5 4 2 7 7 C 1.36446 * 120.17938 * 179.71928 * 6 5 4 8 8 C 1.40829 * 119.81444 * 0.27508 * 7 6 5 9 9 C 1.41218 * 120.17975 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00056 * 205.93340 * 9 8 7 11 11 C 1.39883 * 119.99834 * 25.93380 * 9 8 7 12 12 N 1.30890 * 120.00194 * 14.84644 * 11 9 8 13 13 Si 1.86801 * 120.00182 * 194.83939 * 11 9 8 14 14 H 1.48504 * 109.46965 * 60.00058 * 13 11 9 15 15 H 1.48498 * 109.47494 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46914 * 300.00711 * 13 11 9 17 17 C 1.40833 * 119.63923 * 0.02562 * 8 7 6 18 18 C 1.36437 * 119.81217 * 359.97438 * 17 8 7 19 19 C 1.50706 * 109.47110 * 119.99122 * 2 1 3 20 20 C 1.37967 * 120.07179 * 94.72635 * 19 2 1 21 21 C 1.38340 * 120.14675 * 179.74856 * 20 19 2 22 22 C 1.38382 * 120.30695 * 0.55083 * 21 20 19 23 23 C 1.37930 * 120.15022 * 359.70799 * 22 21 20 24 24 C 1.39611 * 120.07707 * 275.00572 * 19 2 1 25 25 C 1.43200 * 120.15262 * 359.97438 * 24 19 2 26 26 N 3.56121 * 90.44844 * 45.93661 * 2 1 3 27 27 H 1.09008 * 109.46841 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47344 * 300.00330 * 1 2 3 29 29 H 1.08996 * 109.47325 * 60.00573 * 1 2 3 30 30 H 1.07991 * 119.90753 * 359.97438 * 6 5 4 31 31 H 1.07998 * 120.08813 * 180.29920 * 7 6 5 32 32 H 0.96992 * 120.00187 * 180.02562 * 12 11 9 33 33 H 1.08005 * 120.09293 * 179.97438 * 17 8 7 34 34 H 1.08011 * 119.90236 * 180.02562 * 18 17 8 35 35 H 1.07997 * 119.92595 * 0.02562 * 20 19 2 36 36 H 1.08001 * 119.84768 * 180.26012 * 21 20 19 37 37 H 1.08007 * 119.92680 * 179.72637 * 22 21 20 38 38 H 1.08002 * 120.07608 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1037 0.0590 -2.3045 6 6 2.6593 -0.5091 -3.4488 7 6 2.7556 0.2191 -4.5986 8 6 2.2969 1.5504 -4.6248 9 6 2.3923 2.3109 -5.8109 10 1 2.4497 3.3881 -5.7584 11 6 2.4125 1.6691 -7.0536 12 7 2.0559 0.4132 -7.1474 13 14 2.9483 2.6042 -8.5793 14 1 4.3420 3.0851 -8.4012 15 1 2.8812 1.7058 -9.7597 16 1 2.0472 3.7656 -8.7898 17 6 1.7424 2.1190 -3.4618 18 6 1.6533 1.3772 -2.3202 19 6 2.0324 -0.7102 1.2306 20 6 2.3556 -2.0502 1.1719 21 6 2.8218 -2.7025 2.2993 22 6 2.9565 -2.0198 3.4955 23 6 2.6320 -0.6813 3.5696 24 6 2.1662 -0.0152 2.4340 25 6 1.8275 1.3744 2.5035 26 7 1.5579 2.4766 2.5589 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.0108 -1.5299 -3.4268 31 1 3.1821 -0.2243 -5.4862 32 1 2.0702 -0.0320 -8.0090 33 1 1.3887 3.1394 -3.4736 34 1 1.2280 1.8117 -1.4275 35 1 2.2486 -2.5901 0.2427 36 1 3.0773 -3.7505 2.2469 37 1 3.3169 -2.5362 4.3730 38 1 2.7380 -0.1496 4.5036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:03 Heat of formation + Delta-G solvation = 20.565315 kcal Electronic energy + Delta-G solvation = -21756.028151 eV Core-core repulsion = 18527.928316 eV Total energy + Delta-G solvation = -3228.099835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29755 -40.09472 -38.25978 -37.55100 -35.33104 -33.99230 -32.26206 -31.63821 -30.91225 -30.32704 -26.95038 -25.29915 -24.53918 -23.45329 -22.65382 -21.59280 -19.74751 -19.25761 -18.72984 -17.38090 -17.03126 -16.39585 -16.12198 -15.93750 -15.79413 -15.33038 -15.17150 -14.93642 -14.57486 -14.21455 -14.16413 -13.98401 -13.93439 -13.68051 -13.51238 -13.25530 -13.13463 -12.80342 -12.72149 -12.64812 -12.38259 -12.18028 -11.86569 -11.72314 -11.66434 -11.18779 -10.91437 -9.90997 -9.78940 -9.58274 -8.92538 -8.59198 -6.26162 -0.23905 0.37444 0.93396 0.99552 1.39028 1.49777 1.52705 1.53179 1.92014 2.22388 2.39487 2.71932 2.80170 2.88820 3.52661 3.67309 3.87417 3.97441 4.09433 4.21922 4.24377 4.32018 4.45334 4.51683 4.54846 4.68633 4.78501 4.87277 5.02465 5.03545 5.10346 5.19173 5.26877 5.35092 5.42639 5.53580 5.57728 5.65165 5.86444 5.92450 6.03279 6.25021 6.35522 6.53789 6.75607 6.93672 7.05262 8.37218 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.003292 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.358076 B = 8502.938591 C = 9074.160866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 H 0.056 0.944 4 O -0.313 6.313 5 C 0.007 3.993 6 C -0.126 4.126 7 C -0.148 4.148 8 C 0.058 3.942 9 C -0.502 4.502 10 H 0.072 0.928 11 C 0.034 3.966 12 N -0.831 5.831 13 Si 0.983 3.017 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.263 1.263 17 C -0.211 4.211 18 C -0.168 4.168 19 C -0.047 4.047 20 C -0.108 4.108 21 C -0.078 4.078 22 C -0.110 4.110 23 C -0.062 4.062 24 C -0.043 4.043 25 C 0.269 3.731 26 N -0.459 5.459 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.288 0.712 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -9.123 17.783 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.061 3.939 3 H 0.074 0.926 4 O -0.228 6.228 5 C -0.037 4.037 6 C -0.145 4.145 7 C -0.167 4.167 8 C 0.056 3.944 9 C -0.532 4.532 10 H 0.090 0.910 11 C -0.179 4.179 12 N -0.458 5.458 13 Si 0.804 3.196 14 H -0.186 1.186 15 H -0.190 1.190 16 H -0.187 1.187 17 C -0.231 4.231 18 C -0.187 4.187 19 C -0.050 4.050 20 C -0.126 4.126 21 C -0.096 4.096 22 C -0.128 4.128 23 C -0.082 4.082 24 C -0.047 4.047 25 C -0.045 4.045 26 N -0.135 5.135 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.180 0.820 37 H 0.190 0.810 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.219 -7.790 17.727 19.401 hybrid contribution -0.083 0.624 -1.138 1.301 sum 1.137 -7.166 16.589 18.106 Atomic orbital electron populations 1.22261 0.93586 1.03987 1.02447 1.21015 0.94855 0.95003 0.83054 0.92606 1.85829 1.83012 1.37972 1.16018 1.18588 1.07109 0.91161 0.86857 1.20026 1.03237 0.99882 0.91338 1.20970 1.03344 0.95745 0.96651 1.17922 0.90382 0.93153 0.92979 1.19687 1.47367 0.94767 0.91344 0.90974 1.26697 0.91851 0.95856 1.03537 1.69854 1.34928 1.12774 1.28284 0.85247 0.79723 0.78736 0.75940 1.18553 1.19018 1.18714 1.20776 1.07673 0.99985 0.94644 1.20628 1.05424 0.94290 0.98364 1.19620 0.98710 0.95246 0.91407 1.21110 0.98506 0.92609 1.00399 1.21822 0.94522 1.01749 0.91527 1.21568 0.98723 0.93147 0.99330 1.21454 0.94867 0.95462 0.96426 1.15904 1.08269 0.84630 0.95876 1.26084 0.92702 0.93113 0.92620 1.81269 1.10514 1.13026 1.08727 0.90037 0.90736 0.92757 0.86353 0.86680 0.90133 0.88436 0.86940 0.84910 0.82038 0.80980 0.82441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.79 9.14 71.98 0.66 -4.13 16 2 C 0.12 3.73 1.96 29.85 0.06 3.78 16 3 H 0.06 1.98 5.42 -2.38 -0.01 1.97 16 4 O -0.31 -11.88 8.63 -89.99 -0.78 -12.65 16 5 C 0.01 0.30 6.62 22.79 0.15 0.45 16 6 C -0.13 -6.03 9.92 22.11 0.22 -5.81 16 7 C -0.15 -7.89 8.63 22.49 0.19 -7.69 16 8 C 0.06 3.21 5.57 -21.28 -0.12 3.09 16 9 C -0.50 -27.76 9.05 23.40 0.21 -27.55 16 10 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 11 C 0.03 1.76 5.19 85.23 0.44 2.20 16 12 N -0.83 -43.87 10.87 21.82 0.24 -43.64 16 13 Si 0.98 38.90 29.58 68.60 2.03 40.92 16 14 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 15 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 C -0.21 -10.87 9.74 22.48 0.22 -10.65 16 18 C -0.17 -7.83 8.15 22.11 0.18 -7.64 16 19 C -0.05 -1.16 5.10 -19.60 -0.10 -1.26 16 20 C -0.11 -2.19 9.34 22.23 0.21 -1.98 16 21 C -0.08 -0.95 10.04 22.33 0.22 -0.73 16 22 C -0.11 -1.04 10.03 22.23 0.22 -0.82 16 23 C -0.06 -0.83 9.76 22.54 0.22 -0.61 16 24 C -0.04 -0.93 5.73 -21.36 -0.12 -1.05 16 25 C 0.27 7.14 13.69 88.33 1.21 8.35 16 26 N -0.46 -14.41 18.54 19.00 0.35 -14.06 16 27 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.07 1.92 7.94 -2.38 -0.02 1.90 16 29 H 0.05 1.78 6.90 -2.39 -0.02 1.76 16 30 H 0.12 5.04 8.06 -2.92 -0.02 5.02 16 31 H 0.12 6.33 6.15 -2.91 -0.02 6.32 16 32 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 33 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.11 4.73 5.40 -2.90 -0.02 4.71 16 35 H 0.13 2.92 7.35 -2.91 -0.02 2.90 16 36 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -65.62 330.38 7.01 -58.62 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 1.09 Total: 22.86 kcal Atomic # 6 Polarization: -56.13 SS G_CDS: 4.08 Total: -52.05 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.59 Total: -57.70 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.78 Total: -12.65 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.92 kcal Total: -65.62 7.01 -58.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.182 kcal (2) G-P(sol) polarization free energy of solvation -65.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds