Wall clock time and date at job start Tue Mar 31 2020 07:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47135 * 2 1 4 4 O 1.42902 * 109.47268 * 240.00469 * 2 1 3 5 5 C 1.35642 * 117.00258 * 82.64495 * 4 2 1 6 6 C 1.38451 * 120.26155 * 2.50937 * 5 4 2 7 7 C 1.38309 * 120.04451 * 179.74335 * 6 5 4 8 8 C 1.38822 * 120.59118 * 0.55937 * 7 6 5 9 9 C 1.36480 * 120.54191 * 359.69785 * 8 7 6 10 10 C 1.40731 * 119.92867 * 0.02562 * 9 8 7 11 11 C 1.41155 * 120.29101 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99903 * 149.29580 * 11 10 9 13 13 C 1.39930 * 119.99965 * 329.30033 * 11 10 9 14 14 N 1.30866 * 119.99760 * 166.52054 * 13 11 10 15 15 Si 1.86801 * 120.00412 * 346.52545 * 13 11 10 16 16 H 1.48498 * 109.47356 * 92.78238 * 15 13 11 17 17 H 1.48495 * 109.47453 * 212.78351 * 15 13 11 18 18 H 1.48503 * 109.46854 * 332.78337 * 15 13 11 19 19 C 1.50694 * 109.47064 * 120.00300 * 2 1 3 20 20 C 1.37973 * 120.08098 * 94.99951 * 19 2 1 21 21 C 1.38334 * 120.15586 * 180.02562 * 20 19 2 22 22 C 1.38385 * 120.30491 * 359.97438 * 21 20 19 23 23 C 1.37926 * 120.15088 * 359.97438 * 22 21 20 24 24 C 1.39615 * 120.07763 * 275.02289 * 19 2 1 25 25 C 1.43195 * 120.14960 * 359.95730 * 24 19 2 26 26 N 3.56111 * 90.45642 * 45.94220 * 2 1 3 27 27 H 1.09009 * 109.47272 * 59.99933 * 1 2 3 28 28 H 1.09001 * 109.47503 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47461 * 299.99798 * 1 2 3 30 30 H 1.07993 * 119.97679 * 0.02744 * 6 5 4 31 31 H 1.07997 * 119.69897 * 180.27960 * 7 6 5 32 32 H 1.08003 * 119.72699 * 179.71494 * 8 7 6 33 33 H 1.07996 * 120.03961 * 179.97438 * 9 8 7 34 34 H 0.97010 * 119.99999 * 179.97438 * 14 13 11 35 35 H 1.08005 * 119.91998 * 0.02562 * 20 19 2 36 36 H 1.07995 * 119.85105 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.92563 * 179.72268 * 22 21 20 38 38 H 1.08000 * 120.07550 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0658 0.0485 -2.3136 6 6 1.7250 1.3904 -2.3117 7 6 1.7923 2.1236 -3.4824 8 6 2.1891 1.5238 -4.6699 9 6 2.5253 0.2014 -4.7004 10 6 2.4703 -0.5644 -3.5210 11 6 2.8170 -1.9325 -3.5436 12 1 3.2519 -2.3940 -2.6694 13 6 2.5971 -2.6909 -4.6989 14 7 3.1482 -3.8716 -4.8212 15 14 1.5170 -2.0182 -6.0664 16 1 2.3620 -1.3115 -7.0623 17 1 0.8025 -3.1384 -6.7295 18 1 0.5278 -1.0696 -5.4946 19 6 2.0323 -0.7104 1.2304 20 6 2.3609 -2.0491 1.1702 21 6 2.8216 -2.7030 2.2989 22 6 2.9568 -2.0203 3.4950 23 6 2.6330 -0.6817 3.5691 24 6 2.1658 -0.0157 2.4340 25 6 1.8270 1.3738 2.5038 26 7 1.5583 2.4763 2.5591 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.4108 1.8660 -1.3944 31 1 1.5295 3.1711 -3.4736 32 1 2.2322 2.1085 -5.5769 33 1 2.8324 -0.2570 -5.6287 34 1 2.9954 -4.3975 -5.6219 35 1 2.2581 -2.5878 0.2398 36 1 3.0770 -3.7510 2.2464 37 1 3.3128 -2.5379 4.3735 38 1 2.7385 -0.1502 4.5034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:14 Heat of formation + Delta-G solvation = 38.494883 kcal Electronic energy + Delta-G solvation = -22397.224049 eV Core-core repulsion = 19169.901699 eV Total energy + Delta-G solvation = -3227.322351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08756 -38.77658 -36.56662 -36.44644 -33.58891 -32.85292 -31.33480 -30.54601 -29.27692 -28.85045 -25.12275 -24.28356 -23.57367 -22.24082 -20.85237 -20.18973 -18.71844 -17.60109 -17.13502 -16.29715 -15.56813 -15.02635 -14.79921 -14.68972 -14.35433 -14.05422 -13.99670 -13.80155 -13.38289 -13.17434 -12.85445 -12.57714 -12.53566 -12.42911 -12.12699 -12.00843 -11.71893 -11.59542 -11.29902 -11.03686 -10.86068 -10.66141 -10.45875 -10.15770 -9.71671 -9.62778 -9.15133 -9.01037 -8.86066 -7.74028 -7.20733 -6.90178 -4.38795 0.68706 1.25208 2.53182 2.60318 2.61264 2.92070 3.11417 3.22281 3.32472 3.74707 3.79163 3.91067 3.99436 4.50609 4.65072 4.82280 4.95524 5.20340 5.24707 5.28285 5.42568 5.43421 5.62499 5.73654 5.85394 5.92257 5.97029 6.02285 6.15179 6.19031 6.32824 6.40834 6.42989 6.54882 6.76744 6.80289 6.93579 7.14886 7.41281 7.46414 7.55430 7.76554 7.98949 8.17706 8.40212 8.77262 8.80611 10.12167 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.005154 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.423717 B = 5431.282965 C = 6650.721863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.115 3.885 3 H 0.074 0.926 4 O -0.290 6.290 5 C 0.030 3.970 6 C -0.171 4.171 7 C -0.213 4.213 8 C -0.102 4.102 9 C -0.220 4.220 10 C 0.081 3.919 11 C -0.428 4.428 12 H 0.095 0.905 13 C 0.081 3.919 14 N -0.813 5.813 15 Si 0.910 3.090 16 H -0.271 1.271 17 H -0.293 1.293 18 H -0.244 1.244 19 C -0.027 4.027 20 C -0.090 4.090 21 C -0.089 4.089 22 C -0.125 4.125 23 C -0.074 4.074 24 C -0.030 4.030 25 C 0.255 3.745 26 N -0.418 5.418 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.284 0.716 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 0.854 12.037 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.058 3.942 3 H 0.092 0.908 4 O -0.204 6.204 5 C -0.014 4.014 6 C -0.190 4.190 7 C -0.232 4.232 8 C -0.120 4.120 9 C -0.240 4.240 10 C 0.078 3.922 11 C -0.457 4.457 12 H 0.113 0.887 13 C -0.136 4.136 14 N -0.438 5.438 15 Si 0.738 3.262 16 H -0.198 1.198 17 H -0.221 1.221 18 H -0.168 1.168 19 C -0.029 4.029 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.143 4.143 23 C -0.095 4.095 24 C -0.034 4.034 25 C -0.060 4.060 26 N -0.093 5.093 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.549 2.094 12.050 12.493 hybrid contribution -0.334 0.046 -0.688 0.766 sum -2.883 2.140 11.362 11.916 Atomic orbital electron populations 1.22289 0.94352 1.03558 1.02544 1.20916 0.94163 0.95568 0.83563 0.90795 1.86009 1.81536 1.38048 1.14850 1.19003 1.05879 0.90157 0.86362 1.20732 1.06821 0.93459 0.97968 1.20145 1.11897 0.98271 0.92896 1.20280 1.00223 0.94935 0.96572 1.20575 1.11444 0.94153 0.97788 1.17140 0.92532 0.94134 0.88385 1.19302 1.34016 0.92525 0.99837 0.88666 1.26119 0.94438 0.94480 0.98582 1.69673 1.34884 1.10993 1.28218 0.86348 0.81427 0.78301 0.80142 1.19776 1.22074 1.16760 1.19785 0.96478 0.94445 0.92236 1.21208 0.96557 0.93311 0.99663 1.21493 0.96396 1.00512 0.92351 1.21089 1.00926 0.93872 0.98457 1.21042 0.97051 0.94781 0.96625 1.15781 1.06828 0.85592 0.95178 1.25714 0.93718 0.92809 0.93716 1.81240 1.08958 1.11692 1.07458 0.90941 0.90990 0.92174 0.88194 0.88760 0.88788 0.87622 0.90548 0.83330 0.85004 0.85084 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.21 37.16 0.34 -2.23 16 2 C 0.12 1.93 1.98 -27.89 -0.06 1.88 16 3 H 0.07 1.29 5.21 -51.93 -0.27 1.02 16 4 O -0.29 -6.07 8.01 -18.63 -0.15 -6.22 16 5 C 0.03 0.70 6.58 -38.33 -0.25 0.45 16 6 C -0.17 -3.64 8.29 -39.48 -0.33 -3.97 16 7 C -0.21 -4.48 10.04 -39.34 -0.39 -4.87 16 8 C -0.10 -2.22 9.97 -40.00 -0.40 -2.62 16 9 C -0.22 -5.29 6.99 -39.27 -0.27 -5.56 16 10 C 0.08 2.05 5.14 -106.68 -0.55 1.51 16 11 C -0.43 -11.41 9.21 -37.84 -0.35 -11.76 16 12 H 0.10 2.67 7.92 -52.49 -0.42 2.26 16 13 C 0.08 2.11 5.46 -17.33 -0.09 2.01 16 14 N -0.81 -21.35 13.93 55.55 0.77 -20.58 16 15 Si 0.91 20.69 24.42 -169.99 -4.15 16.54 16 16 H -0.27 -5.98 6.65 56.52 0.38 -5.60 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.24 -5.70 6.72 56.52 0.38 -5.32 16 19 C -0.03 -0.38 5.10 -104.21 -0.53 -0.91 16 20 C -0.09 -1.21 9.34 -39.64 -0.37 -1.58 16 21 C -0.09 -0.92 10.04 -39.49 -0.40 -1.31 16 22 C -0.13 -1.10 10.03 -39.64 -0.40 -1.50 16 23 C -0.07 -0.72 9.76 -39.17 -0.38 -1.10 16 24 C -0.03 -0.38 5.73 -106.93 -0.61 -0.99 16 25 C 0.26 3.55 13.69 -22.47 -0.31 3.25 16 26 N -0.42 -6.53 18.54 41.84 0.78 -5.75 16 27 H 0.07 1.17 7.21 -51.92 -0.37 0.79 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 30 H 0.10 1.92 5.65 -52.49 -0.30 1.62 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.11 2.52 4.42 -52.49 -0.23 2.28 16 34 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 35 H 0.15 2.25 7.35 -52.48 -0.39 1.86 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -28.55 324.35 -7.32 -35.86 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.11 Total: 4.56 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -5.35 Total: -29.31 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 1.55 Total: -26.33 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.15 Total: -6.22 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.15 Total: 16.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.55 -7.32 -35.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.359 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds