Wall clock time and date at job start Tue Mar 31 2020 07:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47135 * 2 1 4 4 O 1.42902 * 109.47268 * 240.00469 * 2 1 3 5 5 C 1.35642 * 117.00258 * 82.64495 * 4 2 1 6 6 C 1.38451 * 120.26155 * 2.50937 * 5 4 2 7 7 C 1.38309 * 120.04451 * 179.74335 * 6 5 4 8 8 C 1.38822 * 120.59118 * 0.55937 * 7 6 5 9 9 C 1.36480 * 120.54191 * 359.69785 * 8 7 6 10 10 C 1.40731 * 119.92867 * 0.02562 * 9 8 7 11 11 C 1.41155 * 120.29101 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99903 * 149.29580 * 11 10 9 13 13 C 1.39930 * 119.99965 * 329.30033 * 11 10 9 14 14 N 1.30866 * 119.99760 * 166.52054 * 13 11 10 15 15 Si 1.86801 * 120.00412 * 346.52545 * 13 11 10 16 16 H 1.48498 * 109.47356 * 92.78238 * 15 13 11 17 17 H 1.48495 * 109.47453 * 212.78351 * 15 13 11 18 18 H 1.48503 * 109.46854 * 332.78337 * 15 13 11 19 19 C 1.50694 * 109.47064 * 120.00300 * 2 1 3 20 20 C 1.37973 * 120.08098 * 94.99951 * 19 2 1 21 21 C 1.38334 * 120.15586 * 180.02562 * 20 19 2 22 22 C 1.38385 * 120.30491 * 359.97438 * 21 20 19 23 23 C 1.37926 * 120.15088 * 359.97438 * 22 21 20 24 24 C 1.39615 * 120.07763 * 275.02289 * 19 2 1 25 25 C 1.43195 * 120.14960 * 359.95730 * 24 19 2 26 26 N 3.56111 * 90.45642 * 45.94220 * 2 1 3 27 27 H 1.09009 * 109.47272 * 59.99933 * 1 2 3 28 28 H 1.09001 * 109.47503 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47461 * 299.99798 * 1 2 3 30 30 H 1.07993 * 119.97679 * 0.02744 * 6 5 4 31 31 H 1.07997 * 119.69897 * 180.27960 * 7 6 5 32 32 H 1.08003 * 119.72699 * 179.71494 * 8 7 6 33 33 H 1.07996 * 120.03961 * 179.97438 * 9 8 7 34 34 H 0.97010 * 119.99999 * 179.97438 * 14 13 11 35 35 H 1.08005 * 119.91998 * 0.02562 * 20 19 2 36 36 H 1.07995 * 119.85105 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.92563 * 179.72268 * 22 21 20 38 38 H 1.08000 * 120.07550 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0658 0.0485 -2.3136 6 6 1.7250 1.3904 -2.3117 7 6 1.7923 2.1236 -3.4824 8 6 2.1891 1.5238 -4.6699 9 6 2.5253 0.2014 -4.7004 10 6 2.4703 -0.5644 -3.5210 11 6 2.8170 -1.9325 -3.5436 12 1 3.2519 -2.3940 -2.6694 13 6 2.5971 -2.6909 -4.6989 14 7 3.1482 -3.8716 -4.8212 15 14 1.5170 -2.0182 -6.0664 16 1 2.3620 -1.3115 -7.0623 17 1 0.8025 -3.1384 -6.7295 18 1 0.5278 -1.0696 -5.4946 19 6 2.0323 -0.7104 1.2304 20 6 2.3609 -2.0491 1.1702 21 6 2.8216 -2.7030 2.2989 22 6 2.9568 -2.0203 3.4950 23 6 2.6330 -0.6817 3.5691 24 6 2.1658 -0.0157 2.4340 25 6 1.8270 1.3738 2.5038 26 7 1.5583 2.4763 2.5591 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.4108 1.8660 -1.3944 31 1 1.5295 3.1711 -3.4736 32 1 2.2322 2.1085 -5.5769 33 1 2.8324 -0.2570 -5.6287 34 1 2.9954 -4.3975 -5.6219 35 1 2.2581 -2.5878 0.2398 36 1 3.0770 -3.7510 2.2464 37 1 3.3128 -2.5379 4.3735 38 1 2.7385 -0.1502 4.5034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:13 Heat of formation + Delta-G solvation = 24.122263 kcal Electronic energy + Delta-G solvation = -22397.847293 eV Core-core repulsion = 19169.901699 eV Total energy + Delta-G solvation = -3227.945594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34049 -40.18114 -38.19023 -37.54257 -35.47700 -34.08031 -32.35157 -32.26317 -30.58537 -30.41106 -26.96297 -25.47397 -24.58583 -23.71284 -22.51880 -21.62208 -19.77774 -19.36552 -18.75686 -17.55993 -17.02697 -16.34341 -16.13019 -16.07450 -15.81220 -15.43214 -15.39337 -15.18090 -14.81237 -14.25017 -14.18088 -14.10846 -13.90488 -13.86833 -13.51137 -13.25879 -13.16427 -13.00583 -12.73044 -12.59286 -12.32545 -12.03241 -11.95330 -11.81132 -11.52426 -11.41080 -10.96414 -9.93154 -9.80685 -9.57285 -8.97224 -8.82111 -6.36205 -0.25962 0.35358 0.71228 0.82538 1.27386 1.41250 1.49752 1.51853 1.90854 2.14465 2.40671 2.63674 2.78125 2.87175 3.44521 3.52447 3.81743 3.95715 4.08120 4.16931 4.19885 4.33676 4.41948 4.47235 4.49868 4.58106 4.69638 4.75174 4.79166 5.00167 5.03771 5.08526 5.15776 5.29679 5.32017 5.45169 5.53982 5.69811 5.74921 5.89747 5.95355 6.18542 6.31991 6.34668 6.47112 6.82925 7.02713 8.26248 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.005154 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.423717 B = 5431.282965 C = 6650.721863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 H 0.066 0.934 4 O -0.308 6.308 5 C 0.026 3.974 6 C -0.177 4.177 7 C -0.194 4.194 8 C -0.112 4.112 9 C -0.227 4.227 10 C 0.051 3.949 11 C -0.459 4.459 12 H 0.058 0.942 13 C 0.046 3.954 14 N -0.854 5.854 15 Si 0.962 3.038 16 H -0.257 1.257 17 H -0.281 1.281 18 H -0.255 1.255 19 C -0.046 4.046 20 C -0.113 4.113 21 C -0.082 4.082 22 C -0.108 4.108 23 C -0.059 4.059 24 C -0.040 4.040 25 C 0.272 3.728 26 N -0.452 5.452 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.291 0.709 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 2.352 13.673 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.084 0.916 4 O -0.223 6.223 5 C -0.019 4.019 6 C -0.196 4.196 7 C -0.213 4.213 8 C -0.130 4.130 9 C -0.246 4.246 10 C 0.048 3.952 11 C -0.489 4.489 12 H 0.076 0.924 13 C -0.167 4.167 14 N -0.482 5.482 15 Si 0.787 3.213 16 H -0.183 1.183 17 H -0.208 1.208 18 H -0.179 1.179 19 C -0.049 4.049 20 C -0.131 4.131 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.080 4.080 24 C -0.044 4.044 25 C -0.042 4.042 26 N -0.128 5.128 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.171 0.829 37 H 0.192 0.808 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.013 3.600 13.694 14.477 hybrid contribution -0.175 -0.290 -0.979 1.036 sum -3.189 3.309 12.715 13.520 Atomic orbital electron populations 1.22229 0.93314 1.03675 1.02825 1.21135 0.95094 0.95202 0.83096 0.91619 1.86012 1.81713 1.39049 1.15484 1.19219 1.04934 0.91016 0.86687 1.21039 1.06393 0.92798 0.99343 1.20680 1.08676 0.99839 0.92149 1.20664 0.99706 0.94236 0.98397 1.20747 1.11333 0.95267 0.97261 1.17363 0.93818 0.93877 0.90124 1.19164 1.36638 0.93753 0.99362 0.92416 1.26721 0.95201 0.94609 1.00206 1.69705 1.36812 1.12187 1.29469 0.85553 0.79809 0.77907 0.78041 1.18257 1.20782 1.17899 1.19602 0.98567 0.94814 0.91887 1.21058 0.98801 0.93310 0.99933 1.21770 0.94854 1.01587 0.91822 1.21548 0.98719 0.93399 0.98888 1.21478 0.94676 0.95192 0.96616 1.15838 1.08097 0.84930 0.95503 1.25896 0.92754 0.92877 0.92714 1.81250 1.10353 1.12640 1.08590 0.92135 0.90998 0.90195 0.86128 0.85190 0.85323 0.87748 0.89820 0.86493 0.82870 0.80796 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.21 71.98 0.66 -4.31 16 2 C 0.11 3.82 1.98 29.85 0.06 3.88 16 3 H 0.07 2.31 5.21 -2.39 -0.01 2.30 16 4 O -0.31 -13.60 8.01 -89.57 -0.72 -14.32 16 5 C 0.03 1.24 6.58 23.08 0.15 1.39 16 6 C -0.18 -7.36 8.29 22.34 0.19 -7.18 16 7 C -0.19 -7.62 10.04 22.43 0.23 -7.40 16 8 C -0.11 -4.61 9.97 22.00 0.22 -4.39 16 9 C -0.23 -10.83 6.99 22.47 0.16 -10.67 16 10 C 0.05 2.66 5.14 -21.20 -0.11 2.55 16 11 C -0.46 -26.12 9.21 23.40 0.22 -25.91 16 12 H 0.06 3.57 7.92 -2.91 -0.02 3.55 16 13 C 0.05 2.48 5.46 85.25 0.47 2.94 16 14 N -0.85 -47.20 13.93 21.83 0.30 -46.90 16 15 Si 0.96 43.36 24.42 68.60 1.67 45.03 16 16 H -0.26 -10.86 6.65 99.48 0.66 -10.20 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.26 -11.78 6.72 99.48 0.67 -11.11 16 19 C -0.05 -1.32 5.10 -19.60 -0.10 -1.42 16 20 C -0.11 -3.13 9.34 22.23 0.21 -2.92 16 21 C -0.08 -1.54 10.04 22.33 0.22 -1.32 16 22 C -0.11 -1.45 10.03 22.23 0.22 -1.23 16 23 C -0.06 -0.93 9.76 22.54 0.22 -0.71 16 24 C -0.04 -0.94 5.73 -21.36 -0.12 -1.06 16 25 C 0.27 7.20 13.69 88.33 1.21 8.41 16 26 N -0.45 -13.64 18.54 19.00 0.35 -13.28 16 27 H 0.06 1.95 7.21 -2.38 -0.02 1.94 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.08 2.08 7.94 -2.39 -0.02 2.06 16 30 H 0.12 4.47 5.65 -2.91 -0.02 4.46 16 31 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.10 4.93 4.42 -2.91 -0.01 4.92 16 34 H 0.29 14.51 8.30 -92.70 -0.77 13.75 16 35 H 0.12 3.95 7.35 -2.91 -0.02 3.93 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -65.85 324.35 6.72 -59.13 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 1.01 Total: 19.68 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 4.09 Total: -49.34 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.66 Total: -60.18 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.72 Total: -14.32 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.67 Total: 45.03 kcal Total: -65.85 6.72 -59.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.252 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds