Wall clock time and date at job start Tue Mar 31 2020 07:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47234 * 2 1 4 4 O 1.42904 * 109.46929 * 120.00247 * 2 1 3 5 5 C 1.50704 * 109.46820 * 239.99595 * 2 1 3 6 6 C 1.38398 * 119.93128 * 280.01932 * 5 2 1 7 7 C 1.38366 * 120.28915 * 179.97438 * 6 5 2 8 8 C 1.37966 * 120.14304 * 359.72520 * 7 6 5 9 9 C 1.39565 * 119.85039 * 0.54959 * 8 7 6 10 10 C 1.48022 * 120.14328 * 179.72133 * 9 8 7 11 11 C 1.39969 * 119.50270 * 179.73324 * 10 9 8 12 12 C 1.36014 * 121.19583 * 179.97438 * 11 10 9 13 13 C 1.41035 * 120.10639 * 0.02562 * 12 11 10 14 14 C 1.40458 * 120.48930 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99757 * 208.74162 * 14 13 12 16 16 C 1.40303 * 120.00062 * 28.73323 * 14 13 12 17 17 N 1.30626 * 120.00248 * 197.54050 * 16 14 13 18 18 Si 1.86806 * 120.00099 * 17.54192 * 16 14 13 19 19 H 1.48497 * 109.46961 * 269.99974 * 18 16 14 20 20 H 1.48504 * 109.46750 * 29.99869 * 18 16 14 21 21 H 1.48498 * 109.47218 * 149.99730 * 18 16 14 22 22 C 1.46634 * 119.02386 * 0.27630 * 13 12 11 23 23 C 1.43199 * 120.56769 * 179.70642 * 22 13 12 24 24 N 9.71780 * 111.63608 * 263.50554 * 2 1 3 25 25 C 1.39099 * 118.86801 * 359.42437 * 22 13 12 26 26 C 1.37919 * 119.92245 * 100.00552 * 5 2 1 27 27 H 1.08990 * 109.47283 * 59.99956 * 1 2 3 28 28 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46859 * 299.99561 * 1 2 3 30 30 H 0.96701 * 114.00032 * 299.99124 * 4 2 1 31 31 H 1.08003 * 119.85703 * 359.96572 * 6 5 2 32 32 H 1.08002 * 119.93177 * 180.02562 * 7 6 5 33 33 H 1.07997 * 120.07751 * 180.29883 * 8 7 6 34 34 H 1.08005 * 119.40197 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.94479 * 179.97438 * 12 11 10 36 36 H 0.96999 * 120.00125 * 355.45434 * 17 16 14 37 37 H 1.07999 * 120.09984 * 180.29527 * 25 22 13 38 38 H 1.08004 * 120.08095 * 0.03805 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7105 -1.2305 6 6 2.0657 -2.0937 -1.2639 7 6 2.5249 -2.7537 -2.3900 8 6 2.9475 -2.0357 -3.4897 9 6 2.9217 -0.6406 -3.4603 10 6 3.3794 0.1362 -4.6342 11 6 3.3426 1.5348 -4.5923 12 6 3.7552 2.2825 -5.6509 13 6 4.2309 1.6523 -6.8195 14 6 4.6594 2.4166 -7.9173 15 1 4.5803 2.0167 -8.9174 16 6 5.1902 3.6994 -7.7146 17 7 5.2694 4.5387 -8.7124 18 14 5.7836 4.2073 -6.0176 19 1 4.6615 4.8232 -5.2648 20 1 6.2732 3.0113 -5.2860 21 1 6.8877 5.1910 -6.1532 22 6 4.2663 0.1874 -6.8737 23 6 4.7371 -0.4868 -8.0461 24 7 5.1130 -1.0217 -8.9752 25 6 3.8403 -0.5362 -5.7647 26 6 2.4574 0.0191 -2.3209 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7211 -0.2701 1.9980 31 1 1.7320 -2.6605 -0.4072 32 1 2.5481 -3.8333 -2.4100 33 1 3.3012 -2.5520 -4.3699 34 1 2.9800 2.0292 -3.7032 35 1 3.7176 3.3605 -5.5968 36 1 5.0233 4.2539 -9.6064 37 1 3.8624 -1.6158 -5.7813 38 1 2.4312 1.0985 -2.2935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242547894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:26 Heat of formation + Delta-G solvation = 2.367819 kcal Electronic energy + Delta-G solvation = -21605.541942 eV Core-core repulsion = 18376.653004 eV Total energy + Delta-G solvation = -3228.888938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.50759 -38.08530 -36.86207 -35.33029 -34.37682 -32.36940 -31.71395 -30.52747 -29.33723 -28.82373 -25.39833 -24.08606 -22.58823 -22.09314 -21.16790 -20.09257 -18.56454 -17.58846 -17.20228 -16.35632 -15.26250 -15.15014 -14.86881 -14.64182 -14.28764 -13.94758 -13.67475 -13.43439 -13.15123 -12.87907 -12.74556 -12.58220 -12.50114 -12.25345 -12.10293 -11.89905 -11.55388 -11.37324 -11.19860 -11.00607 -10.88005 -10.57267 -10.30588 -10.24890 -10.14309 -9.77176 -9.45249 -8.83867 -8.53387 -8.08881 -7.90071 -7.38330 -4.98298 1.39072 1.64877 1.91830 2.55244 2.96359 3.13098 3.31685 3.67089 3.70005 3.79177 4.11182 4.25145 4.39640 4.76373 4.97835 5.04208 5.09382 5.14095 5.22445 5.35279 5.40822 5.54691 5.60167 5.68680 5.79117 5.81175 5.93745 5.99610 6.24728 6.34452 6.38082 6.45884 6.74210 6.76132 6.82291 6.91177 7.00764 7.14435 7.25655 7.38801 7.45638 7.52187 7.53484 7.88426 7.99211 8.22479 8.59114 9.47654 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.004213 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.831254 B = 6644.833831 C = 7865.502928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.143 3.857 3 H 0.062 0.938 4 O -0.563 6.563 5 C -0.078 4.078 6 C -0.127 4.127 7 C -0.113 4.113 8 C -0.139 4.139 9 C 0.017 3.983 10 C -0.209 4.209 11 C -0.026 4.026 12 C -0.243 4.243 13 C 0.133 3.867 14 C -0.462 4.462 15 H 0.086 0.914 16 C 0.039 3.961 17 N -0.773 5.773 18 Si 1.072 2.928 19 H -0.268 1.268 20 H -0.254 1.254 21 H -0.283 1.283 22 C -0.176 4.176 23 C 0.296 3.704 24 N -0.497 5.497 25 C 0.010 3.990 26 C -0.132 4.132 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.375 0.625 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.295 0.705 37 H 0.109 0.891 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 -3.333 16.060 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 H 0.080 0.920 4 O -0.368 6.368 5 C -0.078 4.078 6 C -0.145 4.145 7 C -0.131 4.131 8 C -0.157 4.157 9 C 0.017 3.983 10 C -0.210 4.210 11 C -0.044 4.044 12 C -0.261 4.261 13 C 0.127 3.873 14 C -0.488 4.488 15 H 0.104 0.896 16 C -0.186 4.186 17 N -0.391 5.391 18 Si 0.896 3.104 19 H -0.195 1.195 20 H -0.178 1.178 21 H -0.210 1.210 22 C -0.181 4.181 23 C -0.014 4.014 24 N -0.175 5.175 25 C -0.011 4.011 26 C -0.150 4.150 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.222 0.778 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.460 -3.227 14.845 16.143 hybrid contribution -1.185 -0.645 -0.459 1.425 sum -6.645 -3.873 14.385 16.312 Atomic orbital electron populations 1.22483 0.95800 1.02994 1.02428 1.20555 0.92632 0.94405 0.83933 0.91996 1.86579 1.77042 1.57571 1.15645 1.19354 1.00518 0.94006 0.93891 1.20755 1.02152 0.93671 0.97918 1.20977 0.99343 0.99289 0.93521 1.21232 1.02241 0.93581 0.98677 1.18778 0.94350 0.92477 0.92669 1.17753 1.16321 0.92388 0.94518 1.20467 0.94658 0.92752 0.96562 1.20751 1.10561 0.98973 0.95836 1.18559 0.87698 0.89155 0.91921 1.20990 1.31811 1.00346 0.95655 0.89612 1.27747 0.92250 0.91482 1.07075 1.70441 1.30218 1.35439 1.03033 0.83613 0.77240 0.77886 0.71661 1.19466 1.17753 1.21012 1.16749 1.18723 0.91977 0.90658 1.25681 0.91648 0.91663 0.92453 1.81052 1.13928 1.11011 1.11543 1.20728 0.91959 0.97577 0.90810 1.20943 1.01544 0.99484 0.92983 0.91214 0.91711 0.92377 0.77837 0.86649 0.86711 0.86230 0.87738 0.86610 0.89276 0.87361 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.51 37.16 0.35 -1.24 16 2 C 0.14 1.54 3.78 -27.88 -0.11 1.44 16 3 H 0.06 0.61 8.00 -51.93 -0.42 0.20 16 4 O -0.56 -5.92 12.64 -35.23 -0.45 -6.37 16 5 C -0.08 -1.07 4.97 -104.68 -0.52 -1.59 16 6 C -0.13 -1.75 9.35 -39.48 -0.37 -2.12 16 7 C -0.11 -1.56 10.03 -39.63 -0.40 -1.96 16 8 C -0.14 -2.13 9.42 -39.19 -0.37 -2.50 16 9 C 0.02 0.29 5.88 -104.88 -0.62 -0.33 16 10 C -0.21 -3.84 5.88 -104.81 -0.62 -4.46 16 11 C -0.03 -0.47 9.30 -39.73 -0.37 -0.84 16 12 C -0.24 -4.97 7.20 -39.32 -0.28 -5.25 16 13 C 0.13 3.00 5.30 -104.61 -0.55 2.45 16 14 C -0.46 -11.16 8.90 -37.97 -0.34 -11.50 16 15 H 0.09 2.22 7.61 -52.49 -0.40 1.82 16 16 C 0.04 0.92 5.42 -17.29 -0.09 0.82 16 17 N -0.77 -18.49 13.64 55.57 0.76 -17.73 16 18 Si 1.07 21.09 24.90 -169.99 -4.23 16.85 16 19 H -0.27 -4.83 6.44 56.52 0.36 -4.47 16 20 H -0.25 -4.95 7.02 56.52 0.40 -4.56 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.18 -3.82 5.93 -104.27 -0.62 -4.44 16 23 C 0.30 6.74 14.34 -22.47 -0.32 6.42 16 24 N -0.50 -11.74 18.54 41.84 0.78 -10.97 16 25 C 0.01 0.19 9.12 -38.84 -0.35 -0.16 16 26 C -0.13 -1.96 9.03 -39.19 -0.35 -2.32 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.37 2.13 9.08 45.56 0.41 2.55 16 31 H 0.12 1.46 7.77 -52.48 -0.41 1.06 16 32 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.70 6.15 -52.49 -0.32 1.38 16 34 H 0.10 1.62 6.09 -52.48 -0.32 1.30 16 35 H 0.12 2.28 4.39 -52.48 -0.23 2.05 16 36 H 0.30 6.91 8.72 -40.82 -0.36 6.56 16 37 H 0.11 1.84 6.13 -52.49 -0.32 1.52 16 38 H 0.12 1.63 6.11 -52.48 -0.32 1.31 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -26.60 326.20 -7.37 -33.97 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.21 Total: 6.89 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -5.93 Total: -27.56 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 1.53 Total: -28.70 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.45 Total: -6.37 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.23 Total: 16.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.60 -7.37 -33.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242547894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.339 kcal (2) G-P(sol) polarization free energy of solvation -26.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds