Wall clock time and date at job start Tue Mar 31 2020 07:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47234 * 2 1 4 4 O 1.42904 * 109.46929 * 120.00247 * 2 1 3 5 5 C 1.50704 * 109.46820 * 239.99595 * 2 1 3 6 6 C 1.38398 * 119.93128 * 280.01932 * 5 2 1 7 7 C 1.38366 * 120.28915 * 179.97438 * 6 5 2 8 8 C 1.37966 * 120.14304 * 359.72520 * 7 6 5 9 9 C 1.39565 * 119.85039 * 0.54959 * 8 7 6 10 10 C 1.48022 * 120.14328 * 179.72133 * 9 8 7 11 11 C 1.39969 * 119.50270 * 179.73324 * 10 9 8 12 12 C 1.36014 * 121.19583 * 179.97438 * 11 10 9 13 13 C 1.41035 * 120.10639 * 0.02562 * 12 11 10 14 14 C 1.40458 * 120.48930 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99757 * 208.74162 * 14 13 12 16 16 C 1.40303 * 120.00062 * 28.73323 * 14 13 12 17 17 N 1.30626 * 120.00248 * 197.54050 * 16 14 13 18 18 Si 1.86806 * 120.00099 * 17.54192 * 16 14 13 19 19 H 1.48497 * 109.46961 * 269.99974 * 18 16 14 20 20 H 1.48504 * 109.46750 * 29.99869 * 18 16 14 21 21 H 1.48498 * 109.47218 * 149.99730 * 18 16 14 22 22 C 1.46634 * 119.02386 * 0.27630 * 13 12 11 23 23 C 1.43199 * 120.56769 * 179.70642 * 22 13 12 24 24 N 9.71780 * 111.63608 * 263.50554 * 2 1 3 25 25 C 1.39099 * 118.86801 * 359.42437 * 22 13 12 26 26 C 1.37919 * 119.92245 * 100.00552 * 5 2 1 27 27 H 1.08990 * 109.47283 * 59.99956 * 1 2 3 28 28 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46859 * 299.99561 * 1 2 3 30 30 H 0.96701 * 114.00032 * 299.99124 * 4 2 1 31 31 H 1.08003 * 119.85703 * 359.96572 * 6 5 2 32 32 H 1.08002 * 119.93177 * 180.02562 * 7 6 5 33 33 H 1.07997 * 120.07751 * 180.29883 * 8 7 6 34 34 H 1.08005 * 119.40197 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.94479 * 179.97438 * 12 11 10 36 36 H 0.96999 * 120.00125 * 355.45434 * 17 16 14 37 37 H 1.07999 * 120.09984 * 180.29527 * 25 22 13 38 38 H 1.08004 * 120.08095 * 0.03805 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7105 -1.2305 6 6 2.0657 -2.0937 -1.2639 7 6 2.5249 -2.7537 -2.3900 8 6 2.9475 -2.0357 -3.4897 9 6 2.9217 -0.6406 -3.4603 10 6 3.3794 0.1362 -4.6342 11 6 3.3426 1.5348 -4.5923 12 6 3.7552 2.2825 -5.6509 13 6 4.2309 1.6523 -6.8195 14 6 4.6594 2.4166 -7.9173 15 1 4.5803 2.0167 -8.9174 16 6 5.1902 3.6994 -7.7146 17 7 5.2694 4.5387 -8.7124 18 14 5.7836 4.2073 -6.0176 19 1 4.6615 4.8232 -5.2648 20 1 6.2732 3.0113 -5.2860 21 1 6.8877 5.1910 -6.1532 22 6 4.2663 0.1874 -6.8737 23 6 4.7371 -0.4868 -8.0461 24 7 5.1130 -1.0217 -8.9752 25 6 3.8403 -0.5362 -5.7647 26 6 2.4574 0.0191 -2.3209 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7211 -0.2701 1.9980 31 1 1.7320 -2.6605 -0.4072 32 1 2.5481 -3.8333 -2.4100 33 1 3.3012 -2.5520 -4.3699 34 1 2.9800 2.0292 -3.7032 35 1 3.7176 3.3605 -5.5968 36 1 5.0233 4.2539 -9.6064 37 1 3.8624 -1.6158 -5.7813 38 1 2.4312 1.0985 -2.2935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242547894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:25 Heat of formation + Delta-G solvation = -12.090854 kcal Electronic energy + Delta-G solvation = -21606.168917 eV Core-core repulsion = 18376.653004 eV Total energy + Delta-G solvation = -3229.515913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69780 -39.48454 -37.84674 -37.10514 -35.99160 -33.58925 -32.91926 -32.04419 -30.63032 -29.87657 -26.94316 -25.18197 -23.90261 -23.45170 -22.62858 -21.28900 -20.22860 -18.97360 -18.03922 -17.60674 -16.60248 -16.50960 -16.21018 -15.84575 -15.60253 -15.15306 -14.96218 -14.74145 -14.67029 -14.42062 -14.04061 -13.91765 -13.77569 -13.57386 -13.45762 -13.08365 -12.90861 -12.74473 -12.57820 -12.36868 -12.12348 -11.90750 -11.75554 -11.54873 -11.32566 -11.03556 -10.91918 -10.27618 -9.68995 -9.62523 -9.57992 -8.87624 -6.73584 0.04166 0.29432 0.56140 1.07896 1.39905 1.58378 1.79928 1.87446 2.11379 2.22753 2.55422 3.00836 3.33293 3.46795 3.51155 3.92771 4.02182 4.05847 4.12246 4.29465 4.35381 4.42271 4.50240 4.58530 4.69004 4.77283 4.82955 4.94893 4.96294 5.13679 5.17365 5.22046 5.32591 5.34071 5.44227 5.51825 5.66068 5.73209 5.80659 5.84370 6.03520 6.14781 6.21932 6.35640 6.54377 6.79070 6.99536 7.72151 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.004213 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.831254 B = 6644.833831 C = 7865.502928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.144 3.856 3 H 0.075 0.925 4 O -0.580 6.580 5 C -0.085 4.085 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.145 4.145 9 C -0.013 4.013 10 C -0.185 4.185 11 C -0.021 4.021 12 C -0.248 4.248 13 C 0.125 3.875 14 C -0.506 4.506 15 H 0.046 0.954 16 C 0.015 3.985 17 N -0.805 5.805 18 Si 1.097 2.903 19 H -0.234 1.234 20 H -0.252 1.252 21 H -0.281 1.281 22 C -0.194 4.194 23 C 0.300 3.700 24 N -0.523 5.523 25 C 0.005 3.995 26 C -0.130 4.130 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.396 0.604 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.126 0.874 36 H 0.284 0.716 37 H 0.129 0.871 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -4.003 20.755 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.085 3.915 3 H 0.092 0.908 4 O -0.389 6.389 5 C -0.085 4.085 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.163 4.163 9 C -0.013 4.013 10 C -0.186 4.186 11 C -0.040 4.040 12 C -0.266 4.266 13 C 0.119 3.881 14 C -0.533 4.533 15 H 0.065 0.935 16 C -0.204 4.204 17 N -0.425 5.425 18 Si 0.915 3.085 19 H -0.158 1.158 20 H -0.176 1.176 21 H -0.208 1.208 22 C -0.199 4.199 23 C -0.009 4.009 24 N -0.202 5.202 25 C -0.016 4.016 26 C -0.147 4.147 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.246 0.754 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.147 0.853 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.975 -3.906 19.553 21.124 hybrid contribution -0.892 -0.773 -1.568 1.963 sum -7.867 -4.680 17.985 20.181 Atomic orbital electron populations 1.22438 0.94417 1.02853 1.03513 1.20558 0.93564 0.94401 0.82964 0.90759 1.86513 1.77428 1.58244 1.16684 1.19746 0.99669 0.94242 0.94892 1.21069 1.00841 0.94115 0.98129 1.21262 0.98641 1.00627 0.92957 1.21410 1.02034 0.93384 0.99457 1.18777 0.96801 0.93009 0.92729 1.18130 1.13056 0.92839 0.94546 1.20875 0.93175 0.92773 0.97162 1.20910 1.10451 0.99766 0.95496 1.18753 0.87372 0.89492 0.92443 1.20797 1.36134 1.01874 0.94532 0.93541 1.28778 0.91241 0.91088 1.09252 1.70513 1.33159 1.35880 1.02927 0.83390 0.78128 0.77939 0.69076 1.15843 1.17612 1.20775 1.17000 1.19783 0.92037 0.91107 1.26019 0.91172 0.91169 0.92526 1.81021 1.15002 1.12061 1.12115 1.20961 0.91726 0.98714 0.90190 1.21148 1.00582 1.00437 0.92575 0.91543 0.92450 0.89958 0.75358 0.85448 0.84377 0.85760 0.83914 0.85655 0.90502 0.85324 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.51 71.98 0.68 -1.68 16 2 C 0.14 2.45 3.78 29.85 0.11 2.57 16 3 H 0.07 1.10 8.00 -2.39 -0.02 1.08 16 4 O -0.58 -9.73 12.64 -148.98 -1.88 -11.62 16 5 C -0.09 -1.99 4.97 -19.90 -0.10 -2.09 16 6 C -0.12 -2.92 9.35 22.34 0.21 -2.71 16 7 C -0.12 -2.80 10.03 22.24 0.22 -2.57 16 8 C -0.14 -3.97 9.42 22.53 0.21 -3.76 16 9 C -0.01 -0.39 5.88 -20.03 -0.12 -0.51 16 10 C -0.18 -6.29 5.88 -19.99 -0.12 -6.40 16 11 C -0.02 -0.72 9.30 22.17 0.21 -0.51 16 12 C -0.25 -9.74 7.20 22.44 0.16 -9.57 16 13 C 0.12 5.75 5.30 -19.86 -0.11 5.64 16 14 C -0.51 -25.92 8.90 23.31 0.21 -25.71 16 15 H 0.05 2.65 7.61 -2.91 -0.02 2.62 16 16 C 0.01 0.72 5.42 85.37 0.46 1.19 16 17 N -0.80 -40.76 13.64 21.89 0.30 -40.46 16 18 Si 1.10 41.86 24.90 68.60 1.71 43.57 16 19 H -0.23 -7.60 6.44 99.48 0.64 -6.96 16 20 H -0.25 -9.45 7.02 99.48 0.70 -8.75 16 21 H -0.28 -10.53 7.11 99.48 0.71 -9.83 16 22 C -0.19 -8.51 5.93 -19.63 -0.12 -8.63 16 23 C 0.30 14.17 14.34 88.33 1.27 15.44 16 24 N -0.52 -25.66 18.54 19.00 0.35 -25.31 16 25 C 0.00 0.17 9.12 22.75 0.21 0.38 16 26 C -0.13 -3.32 9.03 22.53 0.20 -3.12 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.40 2.79 9.08 -74.06 -0.67 2.12 16 31 H 0.13 2.71 7.77 -2.91 -0.02 2.69 16 32 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.12 3.21 6.15 -2.91 -0.02 3.19 16 34 H 0.14 3.69 6.09 -2.91 -0.02 3.67 16 35 H 0.13 4.67 4.39 -2.91 -0.01 4.65 16 36 H 0.28 14.47 8.72 -92.71 -0.81 13.66 16 37 H 0.13 4.17 6.13 -2.91 -0.02 4.15 16 38 H 0.14 2.98 6.11 -2.91 -0.02 2.96 16 Total: -1.00 -59.96 326.20 4.41 -55.55 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.33 Total: 20.31 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 3.60 Total: -42.05 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.65 Total: -65.77 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.88 Total: -11.62 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.71 Total: 43.57 kcal Total: -59.96 4.41 -55.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242547894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.458 kcal (2) G-P(sol) polarization free energy of solvation -59.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds