Wall clock time and date at job start Tue Mar 31 2020 07:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46780 * 2 1 4 4 O 1.42897 * 109.46813 * 119.99989 * 2 1 3 5 5 C 1.50692 * 109.47107 * 240.00172 * 2 1 3 6 6 C 1.38355 * 119.93929 * 280.01937 * 5 2 1 7 7 C 1.38301 * 120.25410 * 180.02562 * 6 5 2 8 8 C 1.38034 * 120.12604 * 359.70315 * 7 6 5 9 9 C 1.39353 * 119.87132 * 0.54956 * 8 7 6 10 10 C 1.48322 * 120.12455 * 179.74560 * 9 8 7 11 11 C 1.39823 * 119.53409 * 179.97438 * 10 9 8 12 12 C 1.37713 * 121.16826 * 180.28841 * 11 10 9 13 13 C 1.39581 * 120.18355 * 359.44556 * 12 11 10 14 14 C 1.43206 * 120.45429 * 180.29853 * 13 12 11 15 15 N 9.97545 * 110.42811 * 289.17947 * 2 1 3 16 16 C 1.46539 * 119.09182 * 0.27629 * 13 12 11 17 17 C 1.40837 * 120.55431 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00233 * 335.73849 * 17 16 13 19 19 C 1.40229 * 120.00087 * 155.74417 * 17 16 13 20 20 N 1.30664 * 119.99713 * 341.90820 * 19 17 16 21 21 Si 1.86795 * 120.00190 * 161.90665 * 19 17 16 22 22 H 1.48501 * 109.47249 * 60.00135 * 21 19 17 23 23 H 1.48505 * 109.47393 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47274 * 300.00061 * 21 19 17 25 25 C 1.38592 * 119.53483 * 359.72945 * 10 9 8 26 26 C 1.37983 * 119.93911 * 100.00425 * 5 2 1 27 27 H 1.09004 * 109.46716 * 59.99923 * 1 2 3 28 28 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47196 * 300.00323 * 1 2 3 30 30 H 0.96707 * 113.99810 * 299.99903 * 4 2 1 31 31 H 1.08002 * 119.86979 * 359.97438 * 6 5 2 32 32 H 1.08003 * 119.93857 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.06175 * 180.27290 * 8 7 6 34 34 H 1.07994 * 119.41540 * 0.02968 * 11 10 9 35 35 H 1.07998 * 119.90635 * 179.72129 * 12 11 10 36 36 H 0.97010 * 119.99766 * 185.04262 * 20 19 17 37 37 H 1.07999 * 120.13365 * 359.97237 * 25 10 9 38 38 H 1.08004 * 120.06574 * 0.04007 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7103 -1.2304 6 6 2.0658 -2.0931 -1.2641 7 6 2.5261 -2.7517 -2.3898 8 6 2.9492 -2.0320 -3.4891 9 6 2.9227 -0.6390 -3.4588 10 6 3.3813 0.1399 -4.6348 11 6 3.3489 1.5371 -4.5913 12 6 3.7610 2.2934 -5.6658 13 6 4.2331 1.6707 -6.8224 14 6 4.6691 2.4517 -7.9408 15 7 5.0118 3.0711 -8.8292 16 6 4.2768 0.2070 -6.8764 17 6 4.7478 -0.4532 -8.0278 18 1 4.7106 0.0413 -8.9872 19 6 5.2652 -1.7528 -7.9286 20 7 5.6407 -2.2196 -6.7673 21 14 5.4174 -2.8167 -9.4564 22 1 6.3101 -2.1492 -10.4375 23 1 5.9889 -4.1364 -9.0858 24 1 4.0747 -3.0102 -10.0606 25 6 3.8406 -0.5273 -5.7593 26 6 2.4577 0.0195 -2.3215 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.7209 -0.2700 1.9980 31 1 1.7321 -2.6602 -0.4078 32 1 2.5504 -3.8312 -2.4105 33 1 3.3042 -2.5474 -4.3692 34 1 2.9904 2.0318 -3.7008 35 1 3.7231 3.3714 -5.6117 36 1 6.0658 -3.0896 -6.7088 37 1 3.8643 -1.6069 -5.7773 38 1 2.4316 1.0988 -2.2940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242548483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:08 Heat of formation + Delta-G solvation = 5.635332 kcal Electronic energy + Delta-G solvation = -21687.139831 eV Core-core repulsion = 18458.392583 eV Total energy + Delta-G solvation = -3228.747248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.44773 -37.81261 -36.75965 -35.11684 -34.17655 -32.32512 -31.57020 -30.04260 -29.24910 -28.13359 -25.87281 -23.91120 -23.04182 -21.90911 -20.66872 -19.78031 -17.85675 -17.31762 -16.99619 -16.37676 -15.56864 -15.01248 -14.90842 -14.29028 -14.19718 -13.54648 -13.37800 -13.27934 -12.94999 -12.82163 -12.68812 -12.44932 -12.20852 -12.13085 -11.84246 -11.66324 -11.52891 -11.29307 -11.19801 -10.94603 -10.85731 -10.72228 -10.50483 -10.19251 -9.98813 -9.69975 -9.53757 -8.77866 -8.45579 -7.79107 -7.25305 -7.05158 -4.74853 1.33100 1.70927 2.42909 2.65074 2.89785 2.92729 3.06568 3.66660 3.88871 3.91698 4.18716 4.42483 4.46698 4.80116 5.01430 5.09499 5.29718 5.32457 5.40002 5.45615 5.56290 5.57703 5.64582 5.86540 5.93152 5.99108 6.01687 6.21050 6.31298 6.48988 6.65715 6.74541 6.81607 6.83918 6.96082 7.03050 7.19078 7.35357 7.48603 7.55766 7.64997 7.76179 7.85865 8.17813 8.39942 8.51324 8.81747 9.72431 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.004289 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.983514 B = 6526.350215 C = 7936.821008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.145 3.855 3 H 0.062 0.938 4 O -0.563 6.563 5 C -0.092 4.092 6 C -0.108 4.108 7 C -0.125 4.125 8 C -0.106 4.106 9 C -0.020 4.020 10 C -0.020 4.020 11 C -0.238 4.238 12 C -0.028 4.028 13 C -0.187 4.187 14 C 0.300 3.700 15 N -0.511 5.511 16 C 0.148 3.852 17 C -0.429 4.429 18 H 0.087 0.913 19 C 0.077 3.923 20 N -0.764 5.764 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.143 4.143 26 C -0.107 4.107 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.375 0.625 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.292 0.708 37 H 0.133 0.867 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 -2.839 12.545 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 H 0.080 0.920 4 O -0.368 6.368 5 C -0.092 4.092 6 C -0.126 4.126 7 C -0.143 4.143 8 C -0.124 4.124 9 C -0.020 4.020 10 C -0.021 4.021 11 C -0.257 4.257 12 C -0.049 4.049 13 C -0.193 4.193 14 C -0.009 4.009 15 N -0.190 5.190 16 C 0.143 3.857 17 C -0.457 4.457 18 H 0.105 0.895 19 C -0.147 4.147 20 N -0.386 5.386 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.162 4.162 26 C -0.125 4.125 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.221 0.779 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.853 -2.503 10.842 13.068 hybrid contribution -0.170 -0.379 0.179 0.453 sum -7.023 -2.882 11.021 13.383 Atomic orbital electron populations 1.22491 0.95827 1.02996 1.02398 1.20527 0.92589 0.94381 0.83876 0.92017 1.86582 1.77045 1.57568 1.15638 1.19374 1.01694 0.94039 0.94116 1.20832 1.00323 0.93710 0.97713 1.21049 1.00096 0.99552 0.93600 1.21462 0.98603 0.93678 0.98688 1.19039 0.96558 0.92925 0.93495 1.18505 0.98552 0.92641 0.92387 1.20126 1.14074 0.92508 0.99000 1.20367 0.95424 0.97371 0.91723 1.16969 1.19622 0.91308 0.91431 1.25811 0.91320 0.91480 0.92315 1.81017 1.14734 1.11640 1.11657 1.18338 0.87080 0.88040 0.92291 1.19761 1.32738 0.97494 0.95680 0.89512 1.26116 0.92755 0.97746 0.98033 1.69686 1.24289 1.18758 1.25869 0.86204 0.80323 0.78522 0.81122 1.18514 1.19719 1.18130 1.21444 1.02028 0.99936 0.92766 1.21035 0.99176 0.99710 0.92601 0.91215 0.91701 0.92403 0.77854 0.86483 0.86436 0.85139 0.88235 0.88228 0.89661 0.84954 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.51 37.16 0.35 -1.30 16 2 C 0.14 1.62 3.78 -27.89 -0.11 1.52 16 3 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 4 O -0.56 -6.16 12.64 -35.23 -0.45 -6.61 16 5 C -0.09 -1.33 4.97 -104.68 -0.52 -1.85 16 6 C -0.11 -1.56 9.35 -39.52 -0.37 -1.93 16 7 C -0.12 -1.88 10.03 -39.63 -0.40 -2.28 16 8 C -0.11 -1.85 9.41 -39.24 -0.37 -2.21 16 9 C -0.02 -0.37 5.88 -104.90 -0.62 -0.99 16 10 C -0.02 -0.41 5.86 -105.02 -0.62 -1.02 16 11 C -0.24 -4.65 9.37 -39.18 -0.37 -5.01 16 12 C -0.03 -0.57 9.74 -39.27 -0.38 -0.95 16 13 C -0.19 -4.30 5.95 -104.12 -0.62 -4.92 16 14 C 0.30 7.08 14.28 -22.47 -0.32 6.76 16 15 N -0.51 -12.39 18.54 41.84 0.78 -11.61 16 16 C 0.15 3.56 5.74 -104.67 -0.60 2.96 16 17 C -0.43 -10.43 8.58 -37.85 -0.32 -10.76 16 18 H 0.09 2.14 7.37 -52.49 -0.39 1.75 16 19 C 0.08 1.72 5.15 -17.30 -0.09 1.63 16 20 N -0.76 -17.22 10.97 55.56 0.61 -16.61 16 21 Si 0.92 17.07 29.60 -169.99 -5.03 12.03 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 24 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 25 C -0.14 -3.23 8.07 -38.56 -0.31 -3.55 16 26 C -0.11 -1.71 9.03 -39.24 -0.35 -2.07 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.37 2.26 9.08 45.56 0.41 2.68 16 31 H 0.12 1.54 7.77 -52.49 -0.41 1.13 16 32 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.13 2.32 6.15 -52.49 -0.32 1.99 16 34 H 0.10 1.68 6.10 -52.49 -0.32 1.36 16 35 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 37 H 0.13 2.99 4.25 -52.49 -0.22 2.77 16 38 H 0.12 1.79 6.11 -52.48 -0.32 1.47 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -27.04 331.41 -8.34 -35.37 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.23 Total: 8.40 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -6.01 Total: -25.97 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 1.38 Total: -28.22 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.45 Total: -6.61 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.04 -8.34 -35.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242548483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.010 kcal (2) G-P(sol) polarization free energy of solvation -27.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds