Wall clock time and date at job start Tue Mar 31 2020 07:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46780 * 2 1 4 4 O 1.42897 * 109.46813 * 119.99989 * 2 1 3 5 5 C 1.50692 * 109.47107 * 240.00172 * 2 1 3 6 6 C 1.38355 * 119.93929 * 280.01937 * 5 2 1 7 7 C 1.38301 * 120.25410 * 180.02562 * 6 5 2 8 8 C 1.38034 * 120.12604 * 359.70315 * 7 6 5 9 9 C 1.39353 * 119.87132 * 0.54956 * 8 7 6 10 10 C 1.48322 * 120.12455 * 179.74560 * 9 8 7 11 11 C 1.39823 * 119.53409 * 179.97438 * 10 9 8 12 12 C 1.37713 * 121.16826 * 180.28841 * 11 10 9 13 13 C 1.39581 * 120.18355 * 359.44556 * 12 11 10 14 14 C 1.43206 * 120.45429 * 180.29853 * 13 12 11 15 15 N 9.97545 * 110.42811 * 289.17947 * 2 1 3 16 16 C 1.46539 * 119.09182 * 0.27629 * 13 12 11 17 17 C 1.40837 * 120.55431 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00233 * 335.73849 * 17 16 13 19 19 C 1.40229 * 120.00087 * 155.74417 * 17 16 13 20 20 N 1.30664 * 119.99713 * 341.90820 * 19 17 16 21 21 Si 1.86795 * 120.00190 * 161.90665 * 19 17 16 22 22 H 1.48501 * 109.47249 * 60.00135 * 21 19 17 23 23 H 1.48505 * 109.47393 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47274 * 300.00061 * 21 19 17 25 25 C 1.38592 * 119.53483 * 359.72945 * 10 9 8 26 26 C 1.37983 * 119.93911 * 100.00425 * 5 2 1 27 27 H 1.09004 * 109.46716 * 59.99923 * 1 2 3 28 28 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47196 * 300.00323 * 1 2 3 30 30 H 0.96707 * 113.99810 * 299.99903 * 4 2 1 31 31 H 1.08002 * 119.86979 * 359.97438 * 6 5 2 32 32 H 1.08003 * 119.93857 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.06175 * 180.27290 * 8 7 6 34 34 H 1.07994 * 119.41540 * 0.02968 * 11 10 9 35 35 H 1.07998 * 119.90635 * 179.72129 * 12 11 10 36 36 H 0.97010 * 119.99766 * 185.04262 * 20 19 17 37 37 H 1.07999 * 120.13365 * 359.97237 * 25 10 9 38 38 H 1.08004 * 120.06574 * 0.04007 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7103 -1.2304 6 6 2.0658 -2.0931 -1.2641 7 6 2.5261 -2.7517 -2.3898 8 6 2.9492 -2.0320 -3.4891 9 6 2.9227 -0.6390 -3.4588 10 6 3.3813 0.1399 -4.6348 11 6 3.3489 1.5371 -4.5913 12 6 3.7610 2.2934 -5.6658 13 6 4.2331 1.6707 -6.8224 14 6 4.6691 2.4517 -7.9408 15 7 5.0118 3.0711 -8.8292 16 6 4.2768 0.2070 -6.8764 17 6 4.7478 -0.4532 -8.0278 18 1 4.7106 0.0413 -8.9872 19 6 5.2652 -1.7528 -7.9286 20 7 5.6407 -2.2196 -6.7673 21 14 5.4174 -2.8167 -9.4564 22 1 6.3101 -2.1492 -10.4375 23 1 5.9889 -4.1364 -9.0858 24 1 4.0747 -3.0102 -10.0606 25 6 3.8406 -0.5273 -5.7593 26 6 2.4577 0.0195 -2.3215 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.7209 -0.2700 1.9980 31 1 1.7321 -2.6602 -0.4078 32 1 2.5504 -3.8312 -2.4105 33 1 3.3042 -2.5474 -4.3692 34 1 2.9904 2.0318 -3.7008 35 1 3.7231 3.3714 -5.6117 36 1 6.0658 -3.0896 -6.7088 37 1 3.8643 -1.6069 -5.7773 38 1 2.4316 1.0988 -2.2940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242548483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:07 Heat of formation + Delta-G solvation = -7.762090 kcal Electronic energy + Delta-G solvation = -21687.720787 eV Core-core repulsion = 18458.392583 eV Total energy + Delta-G solvation = -3229.328203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68503 -39.26785 -37.84173 -36.91409 -35.84062 -33.54265 -32.85757 -31.66937 -30.36248 -29.48469 -27.56563 -25.08305 -24.40107 -23.25684 -22.20496 -21.02871 -19.54100 -18.81920 -17.99641 -17.66475 -17.09427 -16.29742 -16.09180 -15.52945 -15.43259 -14.94181 -14.75293 -14.71212 -14.56552 -14.40943 -13.88403 -13.78708 -13.48777 -13.43854 -13.38711 -13.07419 -13.01282 -12.78812 -12.49702 -12.48756 -12.20094 -12.13569 -11.74524 -11.55683 -11.30068 -11.14379 -10.98976 -10.21120 -9.63742 -9.49849 -8.89695 -8.62598 -6.53879 -0.14272 0.50918 0.90892 1.02560 1.35096 1.45093 1.53229 2.03819 2.11872 2.35188 2.65081 3.00396 3.38818 3.62020 3.71670 3.91628 3.99566 4.06679 4.24862 4.32746 4.37881 4.45705 4.58514 4.65238 4.74090 4.85571 4.94627 4.97931 5.08304 5.14738 5.23407 5.28837 5.32914 5.43997 5.62173 5.63873 5.70763 5.81680 5.95163 6.09671 6.17206 6.18193 6.46890 6.65085 6.78476 6.97306 6.99437 8.07615 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.004289 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.983514 B = 6526.350215 C = 7936.821008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.146 3.854 3 H 0.075 0.925 4 O -0.579 6.579 5 C -0.094 4.094 6 C -0.104 4.104 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.050 4.050 10 C -0.015 4.015 11 C -0.231 4.231 12 C -0.025 4.025 13 C -0.212 4.212 14 C 0.306 3.694 15 N -0.532 5.532 16 C 0.127 3.873 17 C -0.467 4.467 18 H 0.070 0.930 19 C 0.047 3.953 20 N -0.785 5.785 21 Si 0.976 3.024 22 H -0.268 1.268 23 H -0.254 1.254 24 H -0.256 1.256 25 C -0.169 4.169 26 C -0.106 4.106 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.397 0.603 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.301 0.699 37 H 0.125 0.875 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 -2.963 15.220 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.088 3.912 3 H 0.093 0.907 4 O -0.388 6.388 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.143 4.143 8 C -0.140 4.140 9 C -0.050 4.050 10 C -0.016 4.016 11 C -0.250 4.250 12 C -0.046 4.046 13 C -0.218 4.218 14 C -0.003 4.003 15 N -0.212 5.212 16 C 0.122 3.878 17 C -0.494 4.494 18 H 0.088 0.912 19 C -0.174 4.174 20 N -0.407 5.407 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.178 1.178 24 H -0.180 1.180 25 C -0.188 4.188 26 C -0.124 4.124 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.247 0.753 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.142 0.858 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.054 -2.614 13.552 15.980 hybrid contribution 0.119 -0.338 -0.401 0.537 sum -7.935 -2.951 13.151 15.641 Atomic orbital electron populations 1.22442 0.94202 1.02963 1.03580 1.20517 0.93670 0.94298 0.82734 0.90730 1.86513 1.77442 1.58217 1.16664 1.19799 1.00271 0.94244 0.95069 1.21139 0.99126 0.94168 0.97786 1.21291 0.99290 1.00742 0.92958 1.21460 0.99645 0.93749 0.99171 1.19050 0.98894 0.93281 0.93776 1.18847 0.96669 0.93560 0.92481 1.20540 1.12548 0.92127 0.99808 1.20699 0.94195 0.98938 0.90749 1.17223 1.21151 0.91122 0.92337 1.26017 0.90882 0.91127 0.92256 1.80989 1.15735 1.12439 1.12038 1.18639 0.87372 0.88855 0.92914 1.19840 1.35167 0.99142 0.95244 0.91178 1.26741 0.91983 0.98006 1.00693 1.69699 1.24417 1.19422 1.27203 0.85324 0.80064 0.77481 0.77536 1.19284 1.17790 1.18010 1.21413 1.04020 0.99743 0.93586 1.21189 0.98560 1.00584 0.92093 0.91573 0.92343 0.89747 0.75262 0.84688 0.84222 0.86713 0.84787 0.85384 0.88753 0.85752 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.51 71.98 0.68 -1.87 16 2 C 0.15 2.73 3.78 29.85 0.11 2.85 16 3 H 0.07 1.22 8.00 -2.39 -0.02 1.20 16 4 O -0.58 -10.48 12.64 -148.98 -1.88 -12.36 16 5 C -0.09 -2.44 4.97 -19.90 -0.10 -2.54 16 6 C -0.10 -2.76 9.35 22.31 0.21 -2.55 16 7 C -0.12 -3.58 10.03 22.24 0.22 -3.36 16 8 C -0.12 -4.25 9.41 22.49 0.21 -4.04 16 9 C -0.05 -1.80 5.88 -20.04 -0.12 -1.92 16 10 C -0.01 -0.60 5.86 -20.13 -0.12 -0.72 16 11 C -0.23 -8.70 9.37 22.53 0.21 -8.49 16 12 C -0.03 -1.01 9.74 22.47 0.22 -0.79 16 13 C -0.21 -9.97 5.95 -19.54 -0.12 -10.08 16 14 C 0.31 14.79 14.28 88.33 1.26 16.05 16 15 N -0.53 -26.34 18.54 19.01 0.35 -25.99 16 16 C 0.13 6.40 5.74 -19.90 -0.11 6.29 16 17 C -0.47 -23.84 8.58 23.39 0.20 -23.64 16 18 H 0.07 3.68 7.37 -2.91 -0.02 3.66 16 19 C 0.05 2.17 5.15 85.35 0.44 2.61 16 20 N -0.78 -36.53 10.97 21.87 0.24 -36.29 16 21 Si 0.98 35.77 29.60 68.60 2.03 37.80 16 22 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 25 C -0.17 -7.93 8.07 22.93 0.18 -7.74 16 26 C -0.11 -3.16 9.03 22.49 0.20 -2.95 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.40 3.18 9.08 -74.05 -0.67 2.50 16 31 H 0.14 3.10 7.77 -2.91 -0.02 3.08 16 32 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.11 4.27 6.15 -2.91 -0.02 4.25 16 34 H 0.13 4.06 6.10 -2.91 -0.02 4.04 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.30 12.48 8.30 -92.70 -0.77 11.71 16 37 H 0.12 5.94 4.25 -2.91 -0.01 5.93 16 38 H 0.14 3.57 6.11 -2.91 -0.02 3.56 16 Total: -1.00 -60.02 331.41 4.78 -55.24 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.44 Total: 24.50 kcal Atomic # 6 Polarization: -46.49 SS G_CDS: 3.60 Total: -42.89 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.59 Total: -62.28 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.88 Total: -12.36 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -60.02 4.78 -55.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242548483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.482 kcal (2) G-P(sol) polarization free energy of solvation -60.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds