Wall clock time and date at job start Tue Mar 31 2020 07:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47439 * 2 1 4 4 O 1.42897 * 109.47270 * 239.99471 * 2 1 3 5 5 C 1.50712 * 109.46961 * 120.00109 * 2 1 3 6 6 C 1.38349 * 119.93458 * 85.00081 * 5 2 1 7 7 C 1.38314 * 120.24830 * 180.02562 * 6 5 2 8 8 C 1.38024 * 120.12446 * 0.02562 * 7 6 5 9 9 C 1.39356 * 119.87520 * 359.97438 * 8 7 6 10 10 C 1.48320 * 120.12757 * 179.97438 * 9 8 7 11 11 C 1.39813 * 119.54015 * 180.24528 * 10 9 8 12 12 C 1.37716 * 121.17637 * 180.26862 * 11 10 9 13 13 C 1.39583 * 120.17900 * 359.48895 * 12 11 10 14 14 C 1.43198 * 120.45429 * 180.27855 * 13 12 11 15 15 N 9.97552 * 106.85302 * 71.44792 * 2 1 3 16 16 C 1.46535 * 119.09119 * 0.25559 * 13 12 11 17 17 C 1.40839 * 120.55371 * 180.02562 * 16 13 12 18 18 H 1.07999 * 119.99645 * 335.73948 * 17 16 13 19 19 C 1.40232 * 120.00002 * 155.74305 * 17 16 13 20 20 N 1.30657 * 120.00043 * 341.90726 * 19 17 16 21 21 Si 1.86803 * 120.00056 * 161.90912 * 19 17 16 22 22 H 1.48501 * 109.46972 * 59.99904 * 21 19 17 23 23 H 1.48499 * 109.47190 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47046 * 300.00097 * 21 19 17 25 25 C 1.38603 * 119.53378 * 0.02562 * 10 9 8 26 26 C 1.37986 * 119.93552 * 265.22951 * 5 2 1 27 27 H 1.09001 * 109.47133 * 299.99530 * 1 2 3 28 28 H 1.09000 * 109.47226 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 30 30 H 0.96698 * 114.00666 * 300.00372 * 4 2 1 31 31 H 1.07996 * 119.87759 * 359.97438 * 6 5 2 32 32 H 1.07997 * 119.93776 * 179.97438 * 7 6 5 33 33 H 1.08004 * 120.06676 * 179.97438 * 8 7 6 34 34 H 1.08009 * 119.41542 * 0.03806 * 11 10 9 35 35 H 1.07998 * 119.91255 * 179.76905 * 12 11 10 36 36 H 0.97005 * 120.00540 * 185.03995 * 20 19 17 37 37 H 1.07993 * 120.13155 * 359.96813 * 25 10 9 38 38 H 1.08000 * 120.06252 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7105 1.2306 6 6 2.1639 -2.0877 1.2272 7 6 2.6238 -2.7464 2.3531 8 6 2.9536 -2.0322 3.4872 9 6 2.8231 -0.6448 3.4963 10 6 3.1753 0.1281 4.7121 11 6 3.0347 1.5192 4.7094 12 6 3.3570 2.2705 5.8177 13 6 3.8239 1.6474 6.9763 14 6 4.1551 2.4223 8.1340 15 7 4.4221 3.0376 9.0510 16 6 3.9699 0.1894 6.9917 17 6 4.4376 -0.4711 8.1443 18 1 5.0467 0.0597 8.8611 19 6 4.1126 -1.8179 8.3612 20 7 3.1153 -2.3614 7.7154 21 14 5.1055 -2.8348 9.5734 22 1 5.0161 -2.2223 10.9233 23 1 4.5639 -4.2167 9.6206 24 1 6.5255 -2.8736 9.1406 25 6 3.6350 -0.5392 5.8367 26 6 2.3556 0.0134 2.3599 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7210 -1.5953 -1.2328 31 1 1.9058 -2.6506 0.3424 32 1 2.7242 -3.8217 2.3451 33 1 3.3122 -2.5476 4.3660 34 1 2.6703 2.0138 3.8211 35 1 3.2440 3.3442 5.7919 36 1 2.8440 -3.2704 7.9181 37 1 3.7348 -1.6144 5.8260 38 1 2.2485 1.0881 2.3627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242548486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:12 Heat of formation + Delta-G solvation = 4.218554 kcal Electronic energy + Delta-G solvation = -21717.797371 eV Core-core repulsion = 18488.988687 eV Total energy + Delta-G solvation = -3228.808684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.60775 -37.90015 -36.72614 -35.12452 -34.19620 -32.19084 -31.67797 -30.07783 -29.26534 -28.22546 -25.89736 -23.97765 -23.01665 -22.06133 -20.69647 -20.00201 -17.94837 -17.36629 -17.04432 -15.79701 -15.70876 -15.45989 -14.83399 -14.31172 -14.09725 -13.51862 -13.43423 -13.36424 -13.24730 -12.88326 -12.74898 -12.27914 -12.21844 -12.07460 -11.88253 -11.68709 -11.55358 -11.31170 -11.20963 -11.07451 -10.90560 -10.79793 -10.67836 -10.24375 -9.95568 -9.71395 -9.56785 -8.85043 -8.50100 -7.81805 -7.28880 -7.09372 -4.77332 1.25039 1.66210 2.37422 2.62627 2.87887 2.90929 3.04327 3.64595 3.85095 3.89575 4.29706 4.40184 4.45926 4.66045 4.96698 5.06705 5.19249 5.24171 5.34297 5.41327 5.49717 5.56433 5.68524 5.81388 5.90015 5.96100 5.97327 6.15730 6.24050 6.43188 6.62105 6.69463 6.73105 6.75090 6.91168 6.98970 7.15362 7.29505 7.45431 7.49341 7.62169 7.72974 7.82927 8.14961 8.37317 8.48535 8.79793 9.69691 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.004306 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.100806 B = 6501.733927 C = 7909.960895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.145 3.855 3 H 0.106 0.894 4 O -0.560 6.560 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.015 4.015 10 C -0.022 4.022 11 C -0.237 4.237 12 C -0.028 4.028 13 C -0.186 4.186 14 C 0.300 3.700 15 N -0.510 5.510 16 C 0.147 3.853 17 C -0.429 4.429 18 H 0.087 0.913 19 C 0.077 3.923 20 N -0.765 5.765 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.142 4.142 26 C -0.108 4.108 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.372 0.628 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.292 0.708 37 H 0.133 0.867 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -4.431 -12.603 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 H 0.123 0.877 4 O -0.366 6.366 5 C -0.123 4.123 6 C -0.148 4.148 7 C -0.135 4.135 8 C -0.128 4.128 9 C -0.015 4.015 10 C -0.023 4.023 11 C -0.256 4.256 12 C -0.049 4.049 13 C -0.192 4.192 14 C -0.010 4.010 15 N -0.189 5.189 16 C 0.142 3.858 17 C -0.456 4.456 18 H 0.105 0.895 19 C -0.146 4.146 20 N -0.387 5.387 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.161 4.161 26 C -0.126 4.126 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.220 0.780 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.624 -3.142 -11.357 12.329 hybrid contribution -0.140 -1.329 0.444 1.408 sum -3.765 -4.471 -10.914 12.380 Atomic orbital electron populations 1.22479 0.95658 1.02730 1.02806 1.20779 0.92819 0.95946 0.81816 0.87670 1.86598 1.77438 1.29027 1.43530 1.20344 1.01444 0.94359 0.96122 1.20685 1.02319 0.93594 0.98166 1.20983 0.99805 0.99497 0.93246 1.21456 0.99255 0.93746 0.98334 1.19109 0.96079 0.92977 0.93292 1.18512 0.99180 0.92713 0.91944 1.20133 1.14244 0.92647 0.98614 1.20376 0.95371 0.97403 0.91734 1.16974 1.20160 0.91990 0.90090 1.25807 0.91295 0.91460 0.92410 1.81023 1.14502 1.11667 1.11756 1.18339 0.87010 0.88143 0.92312 1.19768 1.26148 0.94543 1.05175 0.89486 1.26114 0.94135 0.97893 0.96473 1.69676 1.19321 1.15835 1.33861 0.86203 0.80986 0.78291 0.80694 1.18489 1.19717 1.18108 1.21449 1.03799 0.99958 0.90854 1.21065 0.99593 0.99850 0.92118 0.91125 0.91782 0.92250 0.78033 0.87091 0.86400 0.85097 0.88186 0.88177 0.89675 0.84959 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.52 37.16 0.35 -1.31 16 2 C 0.15 1.61 3.83 -27.88 -0.11 1.50 16 3 H 0.11 1.15 8.05 -51.93 -0.42 0.73 16 4 O -0.56 -6.24 13.13 -35.23 -0.46 -6.71 16 5 C -0.12 -1.63 5.00 -104.67 -0.52 -2.15 16 6 C -0.13 -1.64 9.32 -39.51 -0.37 -2.01 16 7 C -0.12 -1.63 10.03 -39.63 -0.40 -2.03 16 8 C -0.11 -1.83 9.41 -39.24 -0.37 -2.20 16 9 C -0.01 -0.26 5.88 -104.90 -0.62 -0.88 16 10 C -0.02 -0.46 5.86 -105.03 -0.62 -1.07 16 11 C -0.24 -4.58 9.37 -39.18 -0.37 -4.95 16 12 C -0.03 -0.57 9.74 -39.27 -0.38 -0.95 16 13 C -0.19 -4.24 5.95 -104.13 -0.62 -4.86 16 14 C 0.30 7.03 14.28 -22.47 -0.32 6.71 16 15 N -0.51 -12.30 18.54 41.84 0.78 -11.53 16 16 C 0.15 3.52 5.74 -104.68 -0.60 2.92 16 17 C -0.43 -10.34 8.58 -37.85 -0.32 -10.66 16 18 H 0.09 2.13 7.37 -52.49 -0.39 1.74 16 19 C 0.08 1.70 5.15 -17.30 -0.09 1.62 16 20 N -0.76 -16.99 10.97 55.56 0.61 -16.38 16 21 Si 0.92 16.90 29.60 -169.99 -5.03 11.87 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 25 C -0.14 -3.17 8.07 -38.55 -0.31 -3.48 16 26 C -0.11 -1.66 9.04 -39.24 -0.35 -2.02 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.37 2.89 7.38 45.56 0.34 3.22 16 31 H 0.11 1.06 6.60 -52.49 -0.35 0.71 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.13 2.26 6.15 -52.48 -0.32 1.93 16 34 H 0.10 1.66 6.10 -52.48 -0.32 1.34 16 35 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.29 5.83 8.30 -40.82 -0.34 5.49 16 37 H 0.13 2.95 4.25 -52.49 -0.22 2.73 16 38 H 0.13 1.76 6.14 -52.49 -0.32 1.44 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -26.38 329.18 -8.41 -34.79 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.25 Total: 8.82 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -6.01 Total: -25.82 kcal Atomic # 7 Polarization: -29.29 SS G_CDS: 1.38 Total: -27.91 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.46 Total: -6.71 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.38 -8.41 -34.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242548486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.008 kcal (2) G-P(sol) polarization free energy of solvation -26.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds