Wall clock time and date at job start Tue Mar 31 2020 07:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47439 * 2 1 4 4 O 1.42897 * 109.47270 * 239.99471 * 2 1 3 5 5 C 1.50712 * 109.46961 * 120.00109 * 2 1 3 6 6 C 1.38349 * 119.93458 * 85.00081 * 5 2 1 7 7 C 1.38314 * 120.24830 * 180.02562 * 6 5 2 8 8 C 1.38024 * 120.12446 * 0.02562 * 7 6 5 9 9 C 1.39356 * 119.87520 * 359.97438 * 8 7 6 10 10 C 1.48320 * 120.12757 * 179.97438 * 9 8 7 11 11 C 1.39813 * 119.54015 * 180.24528 * 10 9 8 12 12 C 1.37716 * 121.17637 * 180.26862 * 11 10 9 13 13 C 1.39583 * 120.17900 * 359.48895 * 12 11 10 14 14 C 1.43198 * 120.45429 * 180.27855 * 13 12 11 15 15 N 9.97552 * 106.85302 * 71.44792 * 2 1 3 16 16 C 1.46535 * 119.09119 * 0.25559 * 13 12 11 17 17 C 1.40839 * 120.55371 * 180.02562 * 16 13 12 18 18 H 1.07999 * 119.99645 * 335.73948 * 17 16 13 19 19 C 1.40232 * 120.00002 * 155.74305 * 17 16 13 20 20 N 1.30657 * 120.00043 * 341.90726 * 19 17 16 21 21 Si 1.86803 * 120.00056 * 161.90912 * 19 17 16 22 22 H 1.48501 * 109.46972 * 59.99904 * 21 19 17 23 23 H 1.48499 * 109.47190 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47046 * 300.00097 * 21 19 17 25 25 C 1.38603 * 119.53378 * 0.02562 * 10 9 8 26 26 C 1.37986 * 119.93552 * 265.22951 * 5 2 1 27 27 H 1.09001 * 109.47133 * 299.99530 * 1 2 3 28 28 H 1.09000 * 109.47226 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 30 30 H 0.96698 * 114.00666 * 300.00372 * 4 2 1 31 31 H 1.07996 * 119.87759 * 359.97438 * 6 5 2 32 32 H 1.07997 * 119.93776 * 179.97438 * 7 6 5 33 33 H 1.08004 * 120.06676 * 179.97438 * 8 7 6 34 34 H 1.08009 * 119.41542 * 0.03806 * 11 10 9 35 35 H 1.07998 * 119.91255 * 179.76905 * 12 11 10 36 36 H 0.97005 * 120.00540 * 185.03995 * 20 19 17 37 37 H 1.07993 * 120.13155 * 359.96813 * 25 10 9 38 38 H 1.08000 * 120.06252 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7105 1.2306 6 6 2.1639 -2.0877 1.2272 7 6 2.6238 -2.7464 2.3531 8 6 2.9536 -2.0322 3.4872 9 6 2.8231 -0.6448 3.4963 10 6 3.1753 0.1281 4.7121 11 6 3.0347 1.5192 4.7094 12 6 3.3570 2.2705 5.8177 13 6 3.8239 1.6474 6.9763 14 6 4.1551 2.4223 8.1340 15 7 4.4221 3.0376 9.0510 16 6 3.9699 0.1894 6.9917 17 6 4.4376 -0.4711 8.1443 18 1 5.0467 0.0597 8.8611 19 6 4.1126 -1.8179 8.3612 20 7 3.1153 -2.3614 7.7154 21 14 5.1055 -2.8348 9.5734 22 1 5.0161 -2.2223 10.9233 23 1 4.5639 -4.2167 9.6206 24 1 6.5255 -2.8736 9.1406 25 6 3.6350 -0.5392 5.8367 26 6 2.3556 0.0134 2.3599 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7210 -1.5953 -1.2328 31 1 1.9058 -2.6506 0.3424 32 1 2.7242 -3.8217 2.3451 33 1 3.3122 -2.5476 4.3660 34 1 2.6703 2.0138 3.8211 35 1 3.2440 3.3442 5.7919 36 1 2.8440 -3.2704 7.9181 37 1 3.7348 -1.6144 5.8260 38 1 2.2485 1.0881 2.3627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242548486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:11 Heat of formation + Delta-G solvation = -8.511805 kcal Electronic energy + Delta-G solvation = -21718.349401 eV Core-core repulsion = 18488.988687 eV Total energy + Delta-G solvation = -3229.360714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76319 -39.34768 -37.85187 -36.90337 -35.83954 -33.40052 -32.88388 -31.68698 -30.32696 -29.56205 -27.57367 -25.11058 -24.33386 -23.35316 -22.20378 -21.21270 -19.56510 -18.83601 -18.33290 -17.10962 -16.86394 -16.64272 -16.11542 -15.67678 -15.22667 -14.94593 -14.77069 -14.61843 -14.58874 -14.40503 -14.19744 -13.80016 -13.53376 -13.40722 -13.27722 -13.02227 -12.91874 -12.80727 -12.60950 -12.45129 -12.22009 -12.12636 -11.79343 -11.66850 -11.34982 -11.20297 -10.96272 -10.22485 -9.62277 -9.50965 -8.90625 -8.63783 -6.54817 -0.15576 0.52530 0.89681 1.01433 1.34671 1.44426 1.52633 2.02787 2.11398 2.34276 2.64080 3.01196 3.59321 3.59777 3.69130 3.71838 3.94354 4.04472 4.25528 4.30547 4.36633 4.44567 4.56531 4.64952 4.72598 4.85981 4.96518 4.98598 5.06062 5.15985 5.22107 5.27169 5.31252 5.42655 5.61483 5.62533 5.68249 5.80996 5.93970 6.08923 6.16535 6.17958 6.45818 6.64086 6.77425 6.84639 6.96293 8.06770 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.004306 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.100806 B = 6501.733927 C = 7909.960895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.149 3.851 3 H 0.106 0.894 4 O -0.570 6.570 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.049 4.049 10 C -0.016 4.016 11 C -0.232 4.232 12 C -0.026 4.026 13 C -0.212 4.212 14 C 0.305 3.695 15 N -0.532 5.532 16 C 0.127 3.873 17 C -0.467 4.467 18 H 0.070 0.930 19 C 0.047 3.953 20 N -0.784 5.784 21 Si 0.976 3.024 22 H -0.268 1.268 23 H -0.253 1.253 24 H -0.257 1.257 25 C -0.168 4.168 26 C -0.111 4.111 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.387 0.613 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.301 0.699 37 H 0.126 0.874 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 -5.299 -15.484 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.091 3.909 3 H 0.124 0.876 4 O -0.379 6.379 5 C -0.121 4.121 6 C -0.136 4.136 7 C -0.136 4.136 8 C -0.145 4.145 9 C -0.049 4.049 10 C -0.017 4.017 11 C -0.251 4.251 12 C -0.046 4.046 13 C -0.219 4.219 14 C -0.003 4.003 15 N -0.212 5.212 16 C 0.122 3.878 17 C -0.494 4.494 18 H 0.088 0.912 19 C -0.174 4.174 20 N -0.407 5.407 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.177 1.177 24 H -0.181 1.181 25 C -0.187 4.187 26 C -0.128 4.128 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.237 0.763 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.711 -4.013 -14.257 15.542 hybrid contribution 0.106 -1.080 1.086 1.535 sum -4.605 -5.093 -13.171 14.854 Atomic orbital electron populations 1.22433 0.94137 1.03429 1.03201 1.20764 0.93833 0.95680 0.80664 0.87603 1.86589 1.77736 1.30377 1.43158 1.20682 1.00288 0.94851 0.96277 1.21164 0.99898 0.93663 0.98836 1.21275 0.99022 1.00783 0.92557 1.21467 1.00274 0.93711 0.99039 1.19089 0.98983 0.93454 0.93348 1.18877 0.96966 0.93542 0.92347 1.20542 1.12807 0.92376 0.99374 1.20700 0.94153 0.98886 0.90901 1.17224 1.21833 0.91862 0.90944 1.26020 0.90810 0.91096 0.92382 1.80993 1.15566 1.12476 1.12147 1.18646 0.87366 0.88933 0.92872 1.19843 1.27815 0.96072 1.05672 0.91223 1.26732 0.94663 0.98002 0.97982 1.69686 1.19825 1.16519 1.34643 0.85328 0.79559 0.77553 0.77988 1.19307 1.17674 1.18080 1.21417 1.06023 0.99813 0.91454 1.21209 0.99143 1.00559 0.91936 0.91534 0.90620 0.91440 0.76288 0.83180 0.83929 0.86934 0.84904 0.85473 0.88714 0.85687 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.52 71.98 0.69 -1.91 16 2 C 0.15 2.75 3.83 29.85 0.11 2.87 16 3 H 0.11 1.95 8.05 -2.39 -0.02 1.93 16 4 O -0.57 -10.38 13.13 -148.98 -1.96 -12.34 16 5 C -0.12 -2.82 5.00 -19.89 -0.10 -2.91 16 6 C -0.12 -2.53 9.32 22.31 0.21 -2.32 16 7 C -0.12 -3.01 10.03 22.24 0.22 -2.79 16 8 C -0.13 -4.20 9.41 22.49 0.21 -3.99 16 9 C -0.05 -1.71 5.88 -20.05 -0.12 -1.83 16 10 C -0.02 -0.67 5.86 -20.13 -0.12 -0.79 16 11 C -0.23 -8.75 9.37 22.53 0.21 -8.53 16 12 C -0.03 -1.04 9.74 22.47 0.22 -0.82 16 13 C -0.21 -9.99 5.95 -19.54 -0.12 -10.11 16 14 C 0.31 14.80 14.28 88.33 1.26 16.06 16 15 N -0.53 -26.37 18.54 19.00 0.35 -26.01 16 16 C 0.13 6.36 5.74 -19.90 -0.11 6.25 16 17 C -0.47 -23.76 8.58 23.39 0.20 -23.56 16 18 H 0.07 3.65 7.37 -2.91 -0.02 3.63 16 19 C 0.05 2.17 5.15 85.35 0.44 2.61 16 20 N -0.78 -36.00 10.97 21.87 0.24 -35.76 16 21 Si 0.98 35.45 29.60 68.60 2.03 37.48 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 25 C -0.17 -7.84 8.07 22.94 0.19 -7.66 16 26 C -0.11 -3.16 9.04 22.49 0.20 -2.96 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.39 4.16 7.38 -74.06 -0.55 3.62 16 31 H 0.15 2.03 6.60 -2.91 -0.02 2.01 16 32 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.11 4.06 6.15 -2.91 -0.02 4.04 16 34 H 0.13 4.07 6.10 -2.91 -0.02 4.06 16 35 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.30 12.26 8.30 -92.70 -0.77 11.49 16 37 H 0.13 5.91 4.25 -2.91 -0.01 5.90 16 38 H 0.14 3.45 6.14 -2.91 -0.02 3.44 16 Total: -1.00 -59.18 329.18 4.84 -54.34 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.57 Total: 24.67 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 3.60 Total: -42.37 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.59 Total: -61.78 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.96 Total: -12.34 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -59.18 4.84 -54.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242548486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.831 kcal (2) G-P(sol) polarization free energy of solvation -59.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds