Wall clock time and date at job start Tue Mar 31 2020 07:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47105 * 24.02484 * 3 2 1 5 5 C 1.42900 * 114.00109 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47163 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47412 * 55.00036 * 6 5 4 8 8 O 1.42898 * 109.47280 * 294.99749 * 6 5 4 9 9 C 1.53006 * 109.47042 * 174.99845 * 6 5 4 10 10 N 1.46503 * 109.46961 * 184.99934 * 9 6 5 11 11 C 1.39787 * 119.99857 * 180.02562 * 10 9 6 12 12 C 1.39411 * 119.91272 * 359.97438 * 11 10 9 13 13 C 1.38371 * 120.46203 * 180.25954 * 12 11 10 14 14 C 1.38005 * 120.29029 * 359.48619 * 13 12 11 15 15 F 1.35089 * 120.08982 * 180.25458 * 14 13 12 16 16 C 1.41010 * 119.81661 * 0.48839 * 14 13 12 17 17 C 1.41295 * 120.22609 * 179.75195 * 16 14 13 18 18 H 1.07996 * 119.99704 * 24.57997 * 17 16 14 19 19 C 1.39917 * 119.99937 * 204.59246 * 17 16 14 20 20 N 1.30855 * 120.00347 * 17.77120 * 19 17 16 21 21 Si 1.86805 * 119.99949 * 197.78273 * 19 17 16 22 22 H 1.48495 * 109.47125 * 59.99172 * 21 19 17 23 23 H 1.48496 * 109.47366 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46827 * 299.99570 * 21 19 17 25 25 C 1.38164 * 119.91392 * 179.97438 * 11 10 9 26 26 H 4.38445 * 5.44425 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47131 * 264.02155 * 3 2 1 28 28 H 1.09004 * 109.46782 * 144.01880 * 3 2 1 29 29 H 1.08993 * 109.46992 * 59.99769 * 5 4 3 30 30 H 1.09003 * 109.46844 * 299.99438 * 5 4 3 31 31 H 0.96697 * 114.00191 * 300.00786 * 8 6 5 32 32 H 1.08999 * 109.46636 * 65.00540 * 9 6 5 33 33 H 1.08997 * 109.47135 * 305.00169 * 9 6 5 34 34 H 0.97000 * 120.00297 * 359.97438 * 10 9 6 35 35 H 1.07997 * 119.76612 * 359.97438 * 12 11 10 36 36 H 1.08003 * 119.85245 * 179.74312 * 13 12 11 37 37 H 0.96998 * 120.00281 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.14507 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2297 -0.5485 5 6 4.5475 -1.3319 -0.5950 6 6 4.9426 -2.6816 -1.1974 7 1 4.4665 -2.7984 -2.1709 8 8 4.5163 -3.7337 -0.3294 9 6 6.4625 -2.7411 -1.3626 10 7 6.8310 -3.9824 -2.0480 11 6 8.1747 -4.2621 -2.3129 12 6 9.1626 -3.3583 -1.9245 13 6 10.4958 -3.6212 -2.1858 14 6 10.8629 -4.7878 -2.8253 15 9 12.1660 -5.0427 -3.0737 16 6 9.8736 -5.7106 -3.2230 17 6 10.2393 -6.9052 -3.8829 18 1 11.2283 -7.3169 -3.7456 19 6 9.3204 -7.5545 -4.7146 20 7 8.2731 -6.9098 -5.1615 21 14 9.5885 -9.3419 -5.1866 22 1 9.6166 -10.1789 -3.9603 23 1 8.4815 -9.7926 -6.0678 24 1 10.8805 -9.4753 -5.9065 25 6 8.5203 -5.4335 -2.9589 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0093 0.1078 1.0220 28 1 3.0089 0.8325 -0.6038 29 1 4.9506 -1.2521 0.4145 30 1 4.9495 -0.5278 -1.2114 31 1 4.9013 -3.6930 0.5567 32 1 6.9359 -2.7137 -0.3811 33 1 6.7976 -1.8875 -1.9516 34 1 6.1426 -4.6105 -2.3173 35 1 8.8851 -2.4445 -1.4203 36 1 11.2527 -2.9123 -1.8842 37 1 7.6362 -7.3599 -5.7383 38 1 7.7547 -6.1334 -3.2592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251876423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:57 Heat of formation + Delta-G solvation = -67.500203 kcal Electronic energy + Delta-G solvation = -22037.043900 eV Core-core repulsion = 18374.356033 eV Total energy + Delta-G solvation = -3662.687867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.05465 -39.04204 -37.87114 -36.87620 -34.51567 -33.54058 -33.24293 -30.65025 -29.69272 -28.13866 -26.80153 -25.28848 -24.38807 -22.18423 -21.09503 -20.08858 -18.77677 -17.50400 -17.18247 -16.83488 -16.32101 -16.02779 -15.83170 -15.34718 -15.07270 -14.80532 -14.54470 -13.86863 -13.64486 -13.59665 -13.23671 -12.76780 -12.61815 -12.54290 -12.45544 -11.70237 -11.60361 -11.39024 -11.08366 -11.01281 -10.93933 -10.86750 -10.82977 -10.50120 -10.26044 -9.97631 -9.89205 -9.42464 -9.28387 -8.71141 -7.53228 -6.83428 -6.19190 -4.40275 2.15710 2.47459 2.76579 2.95790 3.07138 3.10580 3.23084 3.44110 3.92792 4.00843 4.32221 4.38585 4.59852 4.75813 4.80051 4.94810 4.97628 5.02664 5.15418 5.34206 5.57057 5.58251 5.75172 6.01131 6.02509 6.15079 6.51864 6.75594 6.87435 6.98738 7.15987 7.23548 7.28883 7.56747 7.60588 7.67311 7.90128 8.06894 8.31487 8.59248 8.68377 8.79409 8.95455 10.14436 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002914 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.921371 B = 9605.062687 C =10699.316620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.193 4.193 3 C 0.170 3.830 4 O -0.372 6.372 5 C 0.034 3.966 6 C 0.100 3.900 7 H 0.111 0.889 8 O -0.547 6.547 9 C 0.110 3.890 10 N -0.752 5.752 11 C 0.213 3.787 12 C -0.283 4.283 13 C -0.091 4.091 14 C -0.063 4.063 15 F -0.168 7.168 16 C 0.118 3.882 17 C -0.454 4.454 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.785 5.785 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.216 4.216 26 H 0.222 0.778 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.373 0.627 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.396 0.604 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.282 0.718 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 10.812 8.420 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.095 3.905 4 O -0.291 6.291 5 C -0.044 4.044 6 C 0.040 3.960 7 H 0.129 0.871 8 O -0.352 6.352 9 C -0.016 4.016 10 N -0.387 5.387 11 C 0.114 3.886 12 C -0.305 4.305 13 C -0.111 4.111 14 C -0.084 4.084 15 F -0.148 7.148 16 C 0.114 3.886 17 C -0.483 4.483 18 H 0.100 0.900 19 C -0.141 4.141 20 N -0.410 5.410 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.240 4.240 26 H 0.239 0.761 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.220 0.780 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.231 0.769 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.555 10.637 7.739 17.509 hybrid contribution 0.340 -0.440 0.119 0.569 sum -11.214 10.197 7.858 17.073 Atomic orbital electron populations 1.24977 0.95913 0.98106 1.00261 1.22545 0.93934 1.01873 1.00914 1.19089 0.84825 0.87819 0.98788 1.88034 1.20994 1.36315 1.83761 1.23240 0.81224 0.99053 1.00853 1.22136 0.93720 0.84997 0.95125 0.87076 1.86653 1.72099 1.49934 1.26527 1.21592 0.92813 0.89671 0.97553 1.44228 1.05236 1.21964 1.67260 1.17622 0.82467 0.94151 0.94334 1.19655 0.91607 1.01941 1.17344 1.20232 0.95664 0.95524 0.99637 1.17749 0.77814 0.98220 1.14631 1.91240 1.34841 1.94777 1.93911 1.17319 0.90382 0.91311 0.89587 1.19474 0.99951 1.05867 1.22978 0.90010 1.25903 0.94055 0.99938 0.94208 1.69841 1.10266 1.37058 1.23802 0.86323 0.78968 0.82015 0.79215 1.18707 1.20282 1.18888 1.20543 0.96534 0.97927 1.08980 0.76149 0.90833 0.90786 0.92331 0.91676 0.77961 0.92734 0.92170 0.76911 0.88837 0.88363 0.90742 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 19.25 29.55 0.57 -0.95 16 2 C -0.19 -1.96 13.73 -37.12 -0.51 -2.47 16 3 C 0.17 1.49 6.41 34.37 0.22 1.71 16 4 O -0.37 -4.25 10.27 -40.08 -0.41 -4.67 16 5 C 0.03 0.31 5.57 37.16 0.21 0.52 16 6 C 0.10 1.16 3.28 -26.73 -0.09 1.08 16 7 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 8 O -0.55 -7.01 13.25 -40.08 -0.53 -7.54 16 9 C 0.11 1.47 4.54 -4.04 -0.02 1.45 16 10 N -0.75 -13.46 5.68 -58.66 -0.33 -13.79 16 11 C 0.21 4.74 6.64 -83.82 -0.56 4.18 16 12 C -0.28 -6.08 9.32 -39.10 -0.36 -6.44 16 13 C -0.09 -2.09 10.00 -39.62 -0.40 -2.48 16 14 C -0.06 -1.65 7.31 -38.62 -0.28 -1.93 16 15 F -0.17 -4.38 16.71 2.25 0.04 -4.35 16 16 C 0.12 3.21 5.58 -106.78 -0.60 2.62 16 17 C -0.45 -12.36 8.78 -37.79 -0.33 -12.69 16 18 H 0.08 2.21 7.73 -52.49 -0.41 1.80 16 19 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 20 N -0.79 -20.10 10.96 55.55 0.61 -19.49 16 21 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 22 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.22 -5.49 8.52 -38.70 -0.33 -5.82 16 26 H 0.22 1.06 7.80 -54.10 -0.42 0.64 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.37 3.50 9.05 45.56 0.41 3.91 16 32 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 33 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 34 H 0.40 7.10 8.48 -40.82 -0.35 6.75 16 35 H 0.09 1.73 6.70 -52.49 -0.35 1.38 16 36 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 37 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 38 H 0.13 3.26 6.16 -52.49 -0.32 2.94 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -31.28 340.71 -7.02 -38.30 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -3.93 Total: 11.93 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.56 Total: -19.36 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.28 Total: -33.29 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.94 Total: -12.21 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.35 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.28 -7.02 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251876423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.199 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds