Wall clock time and date at job start Tue Mar 31 2020 07:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47105 * 24.02484 * 3 2 1 5 5 C 1.42900 * 114.00109 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47163 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47412 * 55.00036 * 6 5 4 8 8 O 1.42898 * 109.47280 * 294.99749 * 6 5 4 9 9 C 1.53006 * 109.47042 * 174.99845 * 6 5 4 10 10 N 1.46503 * 109.46961 * 184.99934 * 9 6 5 11 11 C 1.39787 * 119.99857 * 180.02562 * 10 9 6 12 12 C 1.39411 * 119.91272 * 359.97438 * 11 10 9 13 13 C 1.38371 * 120.46203 * 180.25954 * 12 11 10 14 14 C 1.38005 * 120.29029 * 359.48619 * 13 12 11 15 15 F 1.35089 * 120.08982 * 180.25458 * 14 13 12 16 16 C 1.41010 * 119.81661 * 0.48839 * 14 13 12 17 17 C 1.41295 * 120.22609 * 179.75195 * 16 14 13 18 18 H 1.07996 * 119.99704 * 24.57997 * 17 16 14 19 19 C 1.39917 * 119.99937 * 204.59246 * 17 16 14 20 20 N 1.30855 * 120.00347 * 17.77120 * 19 17 16 21 21 Si 1.86805 * 119.99949 * 197.78273 * 19 17 16 22 22 H 1.48495 * 109.47125 * 59.99172 * 21 19 17 23 23 H 1.48496 * 109.47366 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46827 * 299.99570 * 21 19 17 25 25 C 1.38164 * 119.91392 * 179.97438 * 11 10 9 26 26 H 4.38445 * 5.44425 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47131 * 264.02155 * 3 2 1 28 28 H 1.09004 * 109.46782 * 144.01880 * 3 2 1 29 29 H 1.08993 * 109.46992 * 59.99769 * 5 4 3 30 30 H 1.09003 * 109.46844 * 299.99438 * 5 4 3 31 31 H 0.96697 * 114.00191 * 300.00786 * 8 6 5 32 32 H 1.08999 * 109.46636 * 65.00540 * 9 6 5 33 33 H 1.08997 * 109.47135 * 305.00169 * 9 6 5 34 34 H 0.97000 * 120.00297 * 359.97438 * 10 9 6 35 35 H 1.07997 * 119.76612 * 359.97438 * 12 11 10 36 36 H 1.08003 * 119.85245 * 179.74312 * 13 12 11 37 37 H 0.96998 * 120.00281 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.14507 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2297 -0.5485 5 6 4.5475 -1.3319 -0.5950 6 6 4.9426 -2.6816 -1.1974 7 1 4.4665 -2.7984 -2.1709 8 8 4.5163 -3.7337 -0.3294 9 6 6.4625 -2.7411 -1.3626 10 7 6.8310 -3.9824 -2.0480 11 6 8.1747 -4.2621 -2.3129 12 6 9.1626 -3.3583 -1.9245 13 6 10.4958 -3.6212 -2.1858 14 6 10.8629 -4.7878 -2.8253 15 9 12.1660 -5.0427 -3.0737 16 6 9.8736 -5.7106 -3.2230 17 6 10.2393 -6.9052 -3.8829 18 1 11.2283 -7.3169 -3.7456 19 6 9.3204 -7.5545 -4.7146 20 7 8.2731 -6.9098 -5.1615 21 14 9.5885 -9.3419 -5.1866 22 1 9.6166 -10.1789 -3.9603 23 1 8.4815 -9.7926 -6.0678 24 1 10.8805 -9.4753 -5.9065 25 6 8.5203 -5.4335 -2.9589 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0093 0.1078 1.0220 28 1 3.0089 0.8325 -0.6038 29 1 4.9506 -1.2521 0.4145 30 1 4.9495 -0.5278 -1.2114 31 1 4.9013 -3.6930 0.5567 32 1 6.9359 -2.7137 -0.3811 33 1 6.7976 -1.8875 -1.9516 34 1 6.1426 -4.6105 -2.3173 35 1 8.8851 -2.4445 -1.4203 36 1 11.2527 -2.9123 -1.8842 37 1 7.6362 -7.3599 -5.7383 38 1 7.7547 -6.1334 -3.2592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251876423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:56 Heat of formation + Delta-G solvation = -89.300417 kcal Electronic energy + Delta-G solvation = -22037.989228 eV Core-core repulsion = 18374.356033 eV Total energy + Delta-G solvation = -3663.633195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.03046 -40.04339 -39.30511 -37.94652 -36.14381 -34.92818 -34.19997 -31.76170 -31.57905 -29.37485 -27.76860 -27.17721 -25.50827 -23.55264 -22.52359 -21.86103 -19.41718 -19.20662 -18.33058 -17.78862 -17.63445 -17.49609 -17.05446 -16.71929 -16.36503 -16.15195 -15.82901 -15.60497 -15.18324 -14.84115 -14.43551 -14.32194 -14.05675 -13.61424 -13.47561 -13.38918 -13.21329 -13.16851 -12.72424 -12.58979 -12.20514 -12.02481 -11.89233 -11.63408 -11.51750 -11.26689 -11.12292 -10.99125 -10.55040 -10.38224 -9.44254 -8.70756 -7.89173 -6.40265 0.96170 1.07701 1.36715 1.47432 1.48090 1.54104 1.81222 2.19920 2.54380 2.71602 3.05367 3.48979 3.55540 3.64430 3.98310 4.00929 4.09582 4.21588 4.30871 4.38216 4.42761 4.51110 4.53476 4.68037 4.78752 5.01945 5.06353 5.07848 5.13240 5.25052 5.46506 5.79986 5.84674 6.04236 6.12424 6.14484 6.44333 6.59179 6.80266 6.81506 6.85242 6.97637 7.13545 8.28761 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002914 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.921371 B = 9605.062687 C =10699.316620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.238 4.238 3 C 0.165 3.835 4 O -0.403 6.403 5 C 0.038 3.962 6 C 0.107 3.893 7 H 0.093 0.907 8 O -0.569 6.569 9 C 0.107 3.893 10 N -0.748 5.748 11 C 0.222 3.778 12 C -0.272 4.272 13 C -0.085 4.085 14 C -0.107 4.107 15 F -0.178 7.178 16 C 0.088 3.912 17 C -0.497 4.497 18 H 0.067 0.933 19 C 0.040 3.960 20 N -0.812 5.812 21 Si 0.981 3.019 22 H -0.260 1.260 23 H -0.262 1.262 24 H -0.263 1.263 25 C -0.241 4.241 26 H 0.251 0.749 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.388 0.612 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.290 0.710 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 12.370 9.556 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.238 4.238 3 C 0.091 3.909 4 O -0.323 6.323 5 C -0.039 4.039 6 C 0.048 3.952 7 H 0.111 0.889 8 O -0.376 6.376 9 C -0.017 4.017 10 N -0.380 5.380 11 C 0.120 3.880 12 C -0.294 4.294 13 C -0.104 4.104 14 C -0.128 4.128 15 F -0.157 7.157 16 C 0.085 3.915 17 C -0.526 4.526 18 H 0.086 0.914 19 C -0.176 4.176 20 N -0.437 5.437 21 Si 0.802 3.198 22 H -0.185 1.185 23 H -0.186 1.186 24 H -0.187 1.187 25 C -0.266 4.266 26 H 0.267 0.733 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.237 0.763 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.766 12.239 8.905 19.801 hybrid contribution 0.572 -0.762 -0.140 0.963 sum -12.195 11.477 8.765 18.901 Atomic orbital electron populations 1.25864 0.96948 0.96739 0.99084 1.23262 0.95211 1.03198 1.02157 1.19321 0.84288 0.87260 1.00079 1.87971 1.22075 1.37896 1.84343 1.23206 0.80640 0.97653 1.02398 1.21984 0.92234 0.86357 0.94640 0.88859 1.86621 1.72573 1.50741 1.27674 1.21851 0.94258 0.87634 0.97979 1.44383 1.03466 1.23442 1.66674 1.17721 0.84656 0.92990 0.92611 1.20082 0.90663 1.02744 1.15936 1.20609 0.97191 0.94620 0.97977 1.18105 0.77506 0.99869 1.17314 1.91194 1.35269 1.95017 1.94248 1.17696 0.91651 0.91947 0.90241 1.19628 1.00277 1.07471 1.25257 0.91441 1.26692 0.93462 1.03974 0.93497 1.69875 1.10935 1.38711 1.24156 0.85269 0.79225 0.76305 0.79032 1.18453 1.18558 1.18703 1.20475 0.95611 0.99473 1.11021 0.73273 0.88961 0.89087 0.89890 0.89846 0.76313 0.90856 0.90903 0.77165 0.84713 0.85359 0.89946 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 19.25 74.32 1.43 -1.23 16 2 C -0.24 -4.53 13.73 31.13 0.43 -4.11 16 3 C 0.17 2.55 6.41 70.18 0.45 3.00 16 4 O -0.40 -8.42 10.27 -144.34 -1.48 -9.91 16 5 C 0.04 0.58 5.57 71.98 0.40 0.98 16 6 C 0.11 2.26 3.28 30.60 0.10 2.36 16 7 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 8 O -0.57 -13.59 13.25 -144.34 -1.91 -15.50 16 9 C 0.11 2.52 4.54 86.38 0.39 2.91 16 10 N -0.75 -25.55 5.68 -339.51 -1.93 -27.48 16 11 C 0.22 9.64 6.64 38.14 0.25 9.90 16 12 C -0.27 -10.94 9.32 22.58 0.21 -10.73 16 13 C -0.08 -3.76 10.00 22.25 0.22 -3.54 16 14 C -0.11 -5.69 7.31 22.89 0.17 -5.52 16 15 F -0.18 -9.56 16.71 44.97 0.75 -8.81 16 16 C 0.09 5.00 5.58 -21.26 -0.12 4.88 16 17 C -0.50 -28.43 8.78 23.43 0.21 -28.22 16 18 H 0.07 3.87 7.73 -2.91 -0.02 3.85 16 19 C 0.04 2.08 5.14 85.25 0.44 2.52 16 20 N -0.81 -42.77 10.96 21.82 0.24 -42.54 16 21 Si 0.98 39.52 29.60 68.60 2.03 41.55 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 25 C -0.24 -12.58 8.52 22.84 0.19 -12.39 16 26 H 0.25 1.80 7.80 -4.43 -0.03 1.77 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.39 6.38 9.05 -74.06 -0.67 5.71 16 32 H 0.07 1.51 7.94 -2.39 -0.02 1.50 16 33 H 0.07 1.60 7.94 -2.39 -0.02 1.58 16 34 H 0.39 13.93 8.48 -92.71 -0.79 13.14 16 35 H 0.14 4.30 6.70 -2.91 -0.02 4.28 16 36 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 38 H 0.11 5.90 6.16 -2.91 -0.02 5.88 16 Total: -1.00 -70.70 340.71 2.12 -68.59 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.36 Total: 33.30 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 4.78 Total: -39.20 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -1.69 Total: -70.01 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -3.39 Total: -25.41 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 0.75 Total: -8.81 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -70.70 2.12 -68.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251876423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.713 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds