Wall clock time and date at job start Tue Mar 31 2020 07:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47187 * 2 1 4 4 O 1.21286 * 119.99816 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00230 * 179.97438 * 3 2 1 6 6 N 1.40102 * 120.00355 * 180.02562 * 5 3 2 7 7 C 1.34779 * 120.00196 * 180.02562 * 6 5 3 8 8 O 1.21580 * 120.00018 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99775 * 359.97438 * 7 6 5 10 10 C 1.40023 * 119.99499 * 175.47713 * 9 7 6 11 11 C 1.38921 * 119.99618 * 215.12333 * 10 9 7 12 12 C 1.38000 * 119.99896 * 180.02562 * 11 10 9 13 13 C 1.38905 * 120.00353 * 0.02562 * 12 11 10 14 14 O 1.35777 * 120.00240 * 179.97438 * 13 12 11 15 15 C 1.34812 * 116.99973 * 5.36033 * 14 13 12 16 16 H 1.07998 * 119.99845 * 354.95341 * 15 14 13 17 17 C 1.38633 * 120.00076 * 174.96139 * 15 14 13 18 18 N 1.31578 * 119.99906 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99986 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46828 * 90.00053 * 19 17 15 21 21 H 1.48496 * 109.46965 * 209.99782 * 19 17 15 22 22 H 1.48491 * 109.47264 * 330.00170 * 19 17 15 23 23 C 1.38911 * 119.99915 * 0.23630 * 13 12 11 24 24 C 1.38003 * 119.99820 * 359.48464 * 23 13 12 25 25 H 1.09001 * 109.46459 * 60.00415 * 1 2 3 26 26 H 1.08993 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47228 * 300.00561 * 1 2 3 28 28 H 1.08998 * 109.47228 * 239.99438 * 2 1 3 29 29 H 1.09001 * 109.46459 * 119.99585 * 2 1 3 30 30 H 0.97003 * 119.99950 * 359.97438 * 5 3 2 31 31 H 0.97003 * 119.99695 * 359.97438 * 6 5 3 32 32 H 0.97002 * 120.00051 * 355.46795 * 9 7 6 33 33 H 1.08003 * 120.00039 * 0.02562 * 11 10 9 34 34 H 1.08003 * 120.00258 * 180.02562 * 12 11 10 35 35 H 0.96999 * 119.99872 * 180.02562 * 18 17 15 36 36 H 1.07995 * 119.99736 * 179.72795 * 23 13 12 37 37 H 1.08001 * 119.99749 * 180.25715 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 7 3.8245 2.9880 0.0011 7 6 5.1496 3.2342 0.0011 8 8 5.5548 4.3805 0.0011 9 7 6.0254 2.2098 0.0011 10 6 7.3992 2.4633 -0.0946 11 6 8.2201 1.5870 -0.7933 12 6 9.5741 1.8365 -0.8871 13 6 10.1163 2.9634 -0.2825 14 8 11.4486 3.2086 -0.3744 15 6 12.1704 2.3822 -1.1577 16 1 11.7011 1.5220 -1.6119 17 6 13.5150 2.6363 -1.3798 18 7 14.2195 1.8294 -2.1439 19 14 14.3265 4.1243 -0.5945 20 1 14.8725 3.7468 0.7339 21 1 15.4298 4.6035 -1.4652 22 1 13.3223 5.2054 -0.4278 23 6 9.2963 3.8367 0.4207 24 6 7.9414 3.5904 0.5097 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9878 0.9298 0.0013 31 1 3.1941 3.7253 0.0007 32 1 5.7040 1.2969 0.0674 33 1 7.7986 0.7106 -1.2630 34 1 10.2123 1.1555 -1.4306 35 1 15.1604 2.0070 -2.2990 36 1 9.7186 4.7106 0.8945 37 1 7.3032 4.2716 1.0530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342373870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:16 Heat of formation + Delta-G solvation = -21.341767 kcal Electronic energy + Delta-G solvation = -22153.900482 eV Core-core repulsion = 18513.134156 eV Total energy + Delta-G solvation = -3640.766326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.98613 -39.88598 -38.92933 -36.87626 -36.02944 -34.03690 -33.45390 -32.35471 -31.04422 -30.36226 -28.08045 -25.31453 -24.93834 -22.55200 -22.38494 -21.24584 -20.57260 -19.33966 -18.24971 -17.85060 -17.43281 -16.83451 -16.36432 -15.93634 -15.49099 -15.14799 -14.80587 -14.54423 -14.00068 -13.88934 -13.84817 -13.69309 -12.91484 -12.86263 -12.44349 -12.33103 -12.26728 -11.93446 -11.87224 -11.68633 -11.54061 -11.01731 -10.85803 -10.63611 -10.24612 -10.21692 -9.80756 -9.37048 -8.84826 -8.68603 -8.35083 -7.12928 -6.44783 -4.10839 1.48547 1.94696 2.04291 2.11399 2.81373 3.02564 3.22665 3.24800 3.40378 3.90885 4.22105 4.41461 4.46435 4.56237 4.63253 4.83887 4.98907 5.08416 5.31281 5.40481 5.43645 5.62644 5.76229 5.91318 5.97905 6.04081 6.05426 6.35886 6.62067 6.69793 6.90847 6.96121 7.04573 7.17444 7.41963 7.53135 7.74066 7.92241 7.99442 8.32721 8.90450 9.52436 10.62602 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.002604 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.869409 B =10748.164123 C =11289.123456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.512 3.488 4 O -0.534 6.534 5 N -0.531 5.531 6 N -0.536 5.536 7 C 0.708 3.292 8 O -0.555 6.555 9 N -0.671 5.671 10 C 0.054 3.946 11 C -0.090 4.090 12 C -0.206 4.206 13 C 0.153 3.847 14 O -0.215 6.215 15 C -0.390 4.390 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.177 4.177 24 C -0.068 4.068 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.420 0.580 31 H 0.442 0.558 32 H 0.393 0.607 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.280 0.720 36 H 0.122 0.878 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.051 -6.766 4.705 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.299 3.701 4 O -0.408 6.408 5 N -0.283 5.283 6 N -0.293 5.293 7 C 0.409 3.591 8 O -0.427 6.427 9 N -0.321 5.321 10 C -0.039 4.039 11 C -0.111 4.111 12 C -0.226 4.226 13 C 0.101 3.899 14 O -0.120 6.120 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.197 4.197 24 C -0.088 4.088 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.261 0.739 31 H 0.288 0.712 32 H 0.228 0.772 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.824 -5.196 4.687 22.918 hybrid contribution 0.401 -0.210 0.111 0.466 sum -21.423 -5.406 4.798 22.609 Atomic orbital electron populations 1.21557 0.92274 1.02109 1.03670 1.21602 0.99068 0.91740 1.05167 1.21147 0.80000 0.92871 0.76098 1.90757 1.54510 1.46308 1.49275 1.45073 1.07497 0.98419 1.77339 1.44692 1.05229 0.97683 1.81739 1.15751 0.79368 0.85461 0.78567 1.91042 1.74408 1.19714 1.57515 1.42287 1.05087 1.07709 1.76972 1.17064 0.80237 1.00372 1.06178 1.20488 0.93379 0.99150 0.98036 1.21077 0.94726 1.00204 1.06583 1.19169 0.84054 0.92841 0.93849 1.83587 1.14591 1.52767 1.61035 1.20756 0.92376 1.06933 1.26439 0.87589 1.24474 0.95284 0.98441 0.95821 1.69652 1.09027 1.37176 1.35799 0.86174 0.79059 0.82588 0.79089 1.19858 1.20810 1.18255 1.20154 0.92202 1.01169 1.06159 1.20765 0.93788 0.96449 0.97822 0.91739 0.91520 0.91759 0.88125 0.88150 0.73873 0.71173 0.77209 0.86877 0.84385 0.91019 0.86008 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.20 37.16 0.34 -0.31 16 2 C -0.13 -0.49 6.42 -27.88 -0.18 -0.67 16 3 C 0.51 3.94 7.95 -10.99 -0.09 3.85 16 4 O -0.53 -6.34 15.82 5.55 0.09 -6.25 16 5 N -0.53 -3.78 6.26 31.22 0.20 -3.58 16 6 N -0.54 -5.69 6.26 27.63 0.17 -5.52 16 7 C 0.71 9.66 8.52 -86.91 -0.74 8.91 16 8 O -0.55 -9.87 14.62 5.29 0.08 -9.80 16 9 N -0.67 -8.18 5.30 -14.18 -0.08 -8.25 16 10 C 0.05 0.88 6.30 -83.61 -0.53 0.35 16 11 C -0.09 -1.49 9.96 -39.42 -0.39 -1.88 16 12 C -0.21 -4.19 9.16 -39.42 -0.36 -4.55 16 13 C 0.15 3.46 6.65 -39.09 -0.26 3.20 16 14 O -0.22 -5.57 8.58 0.02 0.00 -5.57 16 15 C -0.39 -10.72 9.94 30.88 0.31 -10.42 16 16 H 0.11 2.94 5.43 -52.49 -0.28 2.66 16 17 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 18 N -0.88 -24.97 13.96 55.48 0.77 -24.19 16 19 Si 0.91 21.48 28.62 -169.99 -4.86 16.62 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.18 -3.56 9.99 -39.42 -0.39 -3.95 16 24 C -0.07 -1.24 8.69 -39.42 -0.34 -1.59 16 25 H 0.06 0.39 8.10 -51.93 -0.42 -0.04 16 26 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 28 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.42 1.66 6.71 -182.59 -1.23 0.43 16 31 H 0.44 4.95 8.10 -182.59 -1.48 3.47 16 32 H 0.39 3.12 6.76 -40.82 -0.28 2.85 16 33 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.14 2.92 5.63 -52.48 -0.30 2.62 16 35 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.13 2.38 6.22 -52.49 -0.33 2.06 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -34.22 322.90 -7.47 -41.69 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.98 Total: 5.40 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.73 Total: -5.40 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 1.07 Total: -41.55 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.17 Total: -21.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.86 Total: 16.62 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.22 -7.47 -41.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342373870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.347 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds