Wall clock time and date at job start Tue Mar 31 2020 07:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47187 * 2 1 4 4 O 1.21286 * 119.99816 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00230 * 179.97438 * 3 2 1 6 6 N 1.40102 * 120.00355 * 180.02562 * 5 3 2 7 7 C 1.34779 * 120.00196 * 180.02562 * 6 5 3 8 8 O 1.21580 * 120.00018 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99775 * 359.97438 * 7 6 5 10 10 C 1.40023 * 119.99499 * 175.47713 * 9 7 6 11 11 C 1.38921 * 119.99618 * 215.12333 * 10 9 7 12 12 C 1.38000 * 119.99896 * 180.02562 * 11 10 9 13 13 C 1.38905 * 120.00353 * 0.02562 * 12 11 10 14 14 O 1.35777 * 120.00240 * 179.97438 * 13 12 11 15 15 C 1.34812 * 116.99973 * 5.36033 * 14 13 12 16 16 H 1.07998 * 119.99845 * 354.95341 * 15 14 13 17 17 C 1.38633 * 120.00076 * 174.96139 * 15 14 13 18 18 N 1.31578 * 119.99906 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99986 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46828 * 90.00053 * 19 17 15 21 21 H 1.48496 * 109.46965 * 209.99782 * 19 17 15 22 22 H 1.48491 * 109.47264 * 330.00170 * 19 17 15 23 23 C 1.38911 * 119.99915 * 0.23630 * 13 12 11 24 24 C 1.38003 * 119.99820 * 359.48464 * 23 13 12 25 25 H 1.09001 * 109.46459 * 60.00415 * 1 2 3 26 26 H 1.08993 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47228 * 300.00561 * 1 2 3 28 28 H 1.08998 * 109.47228 * 239.99438 * 2 1 3 29 29 H 1.09001 * 109.46459 * 119.99585 * 2 1 3 30 30 H 0.97003 * 119.99950 * 359.97438 * 5 3 2 31 31 H 0.97003 * 119.99695 * 359.97438 * 6 5 3 32 32 H 0.97002 * 120.00051 * 355.46795 * 9 7 6 33 33 H 1.08003 * 120.00039 * 0.02562 * 11 10 9 34 34 H 1.08003 * 120.00258 * 180.02562 * 12 11 10 35 35 H 0.96999 * 119.99872 * 180.02562 * 18 17 15 36 36 H 1.07995 * 119.99736 * 179.72795 * 23 13 12 37 37 H 1.08001 * 119.99749 * 180.25715 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 7 3.8245 2.9880 0.0011 7 6 5.1496 3.2342 0.0011 8 8 5.5548 4.3805 0.0011 9 7 6.0254 2.2098 0.0011 10 6 7.3992 2.4633 -0.0946 11 6 8.2201 1.5870 -0.7933 12 6 9.5741 1.8365 -0.8871 13 6 10.1163 2.9634 -0.2825 14 8 11.4486 3.2086 -0.3744 15 6 12.1704 2.3822 -1.1577 16 1 11.7011 1.5220 -1.6119 17 6 13.5150 2.6363 -1.3798 18 7 14.2195 1.8294 -2.1439 19 14 14.3265 4.1243 -0.5945 20 1 14.8725 3.7468 0.7339 21 1 15.4298 4.6035 -1.4652 22 1 13.3223 5.2054 -0.4278 23 6 9.2963 3.8367 0.4207 24 6 7.9414 3.5904 0.5097 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9878 0.9298 0.0013 31 1 3.1941 3.7253 0.0007 32 1 5.7040 1.2969 0.0674 33 1 7.7986 0.7106 -1.2630 34 1 10.2123 1.1555 -1.4306 35 1 15.1604 2.0070 -2.2990 36 1 9.7186 4.7106 0.8945 37 1 7.3032 4.2716 1.0530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342373870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:16 Heat of formation + Delta-G solvation = -47.199198 kcal Electronic energy + Delta-G solvation = -22155.021744 eV Core-core repulsion = 18513.134156 eV Total energy + Delta-G solvation = -3641.887588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02688 -40.92987 -40.36445 -38.39199 -36.97604 -35.37676 -34.32708 -33.92015 -31.91078 -31.82305 -29.57607 -27.17615 -25.45071 -24.02657 -23.70065 -21.92799 -21.92413 -20.41127 -19.63359 -19.19879 -18.94491 -17.92569 -17.09993 -16.98350 -16.57078 -16.37408 -16.27024 -15.68331 -15.64209 -15.35684 -15.18060 -14.46663 -14.42887 -14.16868 -14.07604 -13.46264 -13.34840 -13.22068 -12.78635 -12.64115 -12.61774 -12.47180 -12.00639 -11.98920 -11.73693 -11.48134 -11.18630 -11.04676 -10.69840 -9.86334 -9.56559 -8.67713 -8.47701 -6.18419 0.47233 0.51390 0.75520 1.33826 1.36190 1.40635 1.53495 1.79585 1.92376 2.29945 2.77521 3.04140 3.19033 3.35537 3.88285 4.04544 4.12410 4.22775 4.32325 4.47610 4.53320 4.68632 4.75443 5.01994 5.04204 5.10483 5.13764 5.25455 5.28753 5.40797 5.47139 5.53352 5.63941 5.79535 5.90700 6.18346 6.25485 6.55355 6.87278 7.13396 7.30173 7.61952 8.63334 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.002604 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.869409 B =10748.164123 C =11289.123456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.510 3.490 4 O -0.580 6.580 5 N -0.519 5.519 6 N -0.530 5.530 7 C 0.710 3.290 8 O -0.599 6.599 9 N -0.655 5.655 10 C 0.084 3.916 11 C -0.078 4.078 12 C -0.213 4.213 13 C 0.115 3.885 14 O -0.245 6.245 15 C -0.396 4.396 16 H 0.090 0.910 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.965 3.035 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.266 1.266 23 C -0.178 4.178 24 C -0.075 4.075 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.437 0.563 31 H 0.441 0.559 32 H 0.419 0.581 33 H 0.160 0.840 34 H 0.124 0.876 35 H 0.284 0.716 36 H 0.126 0.874 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.388 -8.246 5.316 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.299 3.701 4 O -0.458 6.458 5 N -0.273 5.273 6 N -0.285 5.285 7 C 0.410 3.590 8 O -0.474 6.474 9 N -0.307 5.307 10 C -0.010 4.010 11 C -0.098 4.098 12 C -0.233 4.233 13 C 0.065 3.935 14 O -0.153 6.153 15 C -0.472 4.472 16 H 0.107 0.893 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.191 1.191 23 C -0.197 4.197 24 C -0.095 4.095 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.282 0.718 31 H 0.287 0.713 32 H 0.258 0.742 33 H 0.178 0.822 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.144 0.856 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.233 -6.750 5.315 25.711 hybrid contribution 0.651 0.175 -0.027 0.674 sum -23.582 -6.575 5.288 25.046 Atomic orbital electron populations 1.21590 0.93362 1.03033 1.01970 1.21729 0.97943 0.88920 1.08017 1.22068 0.79405 0.94112 0.74478 1.90752 1.55659 1.48056 1.51307 1.45195 1.07985 0.97018 1.77128 1.44456 1.04129 0.99664 1.80206 1.15743 0.80127 0.84851 0.78242 1.91025 1.75587 1.21566 1.59243 1.41991 1.03213 1.08998 1.76498 1.17119 0.81992 0.98669 1.03207 1.20788 0.91583 1.00390 0.97017 1.21150 0.96429 0.99353 1.06327 1.19624 0.83433 0.94596 0.95811 1.83534 1.16164 1.53256 1.62312 1.20745 0.92914 1.06866 1.26665 0.89300 1.25208 0.95868 1.01073 0.96600 1.69724 1.09560 1.39036 1.37845 0.85289 0.78072 0.79168 0.78685 1.19032 1.19455 1.19077 1.20309 0.92850 1.00967 1.05602 1.20922 0.92967 0.97454 0.98199 0.93548 0.89212 0.93472 0.85164 0.85059 0.71806 0.71331 0.74191 0.82224 0.85791 0.90651 0.85624 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 71.98 0.66 -0.34 16 2 C -0.13 -0.39 6.42 29.85 0.19 -0.20 16 3 C 0.51 6.34 7.95 87.66 0.70 7.04 16 4 O -0.58 -13.02 15.82 -3.05 -0.05 -13.07 16 5 N -0.52 -5.45 6.26 -173.54 -1.09 -6.53 16 6 N -0.53 -9.87 6.26 -184.75 -1.16 -11.03 16 7 C 0.71 17.37 8.52 179.05 1.53 18.90 16 8 O -0.60 -20.34 14.62 -3.97 -0.06 -20.40 16 9 N -0.66 -13.31 5.30 -317.04 -1.68 -14.99 16 10 C 0.08 2.47 6.30 38.16 0.24 2.71 16 11 C -0.08 -2.31 9.96 22.38 0.22 -2.09 16 12 C -0.21 -8.56 9.16 22.37 0.20 -8.36 16 13 C 0.11 5.25 6.65 22.59 0.15 5.40 16 14 O -0.25 -13.11 8.58 -22.86 -0.20 -13.31 16 15 C -0.40 -22.63 9.94 67.91 0.68 -21.96 16 16 H 0.09 5.20 5.43 -2.91 -0.02 5.18 16 17 C 0.01 0.63 5.49 84.83 0.47 1.10 16 18 N -0.92 -53.93 13.96 21.61 0.30 -53.63 16 19 Si 0.96 45.27 28.62 68.60 1.96 47.24 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.18 -7.11 9.99 22.38 0.22 -6.88 16 24 C -0.08 -2.62 8.69 22.37 0.19 -2.43 16 25 H 0.05 0.49 8.10 -2.39 -0.02 0.47 16 26 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.05 0.49 8.10 -2.39 -0.02 0.47 16 28 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.44 1.23 6.71 -213.32 -1.43 -0.20 16 31 H 0.44 9.18 8.10 -213.32 -1.73 7.45 16 32 H 0.42 4.39 6.76 -92.71 -0.63 3.76 16 33 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.12 5.36 5.63 -2.91 -0.02 5.34 16 35 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 37 H 0.14 4.74 6.22 -2.91 -0.02 4.72 16 Total: -1.00 -78.67 322.90 0.86 -77.81 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -2.63 Total: 15.02 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.45 Total: -7.12 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.62 Total: -86.17 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.30 Total: -46.78 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.96 Total: 47.24 kcal Total: -78.67 0.86 -77.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342373870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.607 kcal (2) G-P(sol) polarization free energy of solvation -78.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds