Wall clock time and date at job start Tue Mar 31 2020 07:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.67846 * 2 1 4 4 C 1.53300 * 109.68161 * 120.51425 * 2 1 3 5 5 H 1.09001 * 109.51109 * 52.08868 * 4 2 1 6 6 C 1.50698 * 109.51164 * 291.98651 * 4 2 1 7 7 C 1.38268 * 119.98887 * 100.09983 * 6 4 2 8 8 C 1.38219 * 120.05468 * 180.02562 * 7 6 4 9 9 C 1.38222 * 120.02354 * 0.02562 * 8 7 6 10 10 C 1.38437 * 119.97458 * 359.97438 * 9 8 7 11 11 F 1.35101 * 120.02227 * 179.97438 * 10 9 8 12 12 C 1.38176 * 119.98720 * 280.12329 * 6 4 2 13 13 O 1.42965 * 109.26540 * 172.03747 * 4 2 1 14 14 C 1.42955 * 114.16864 * 297.50185 * 13 4 2 15 15 C 1.53304 * 109.26460 * 62.49615 * 14 13 4 16 16 N 1.47145 * 109.71456 * 239.45989 * 2 1 3 17 17 C 1.34783 * 120.98082 * 9.74149 * 16 2 1 18 18 O 1.21690 * 119.99505 * 5.49752 * 17 16 2 19 19 C 1.46373 * 120.00218 * 185.48761 * 17 16 2 20 20 H 1.07999 * 119.99604 * 347.68760 * 19 17 16 21 21 C 1.40041 * 120.00036 * 167.68470 * 19 17 16 22 22 N 1.30679 * 120.00114 * 169.45858 * 21 19 17 23 23 Si 1.86803 * 120.00198 * 349.46248 * 21 19 17 24 24 H 1.48493 * 109.47248 * 84.87657 * 23 21 19 25 25 H 1.48505 * 109.47082 * 204.87780 * 23 21 19 26 26 H 1.48505 * 109.46722 * 324.87410 * 23 21 19 27 27 H 1.09004 * 109.46958 * 291.68371 * 1 2 3 28 28 H 1.09005 * 109.47014 * 51.68077 * 1 2 3 29 29 H 1.08998 * 109.47452 * 171.68526 * 1 2 3 30 30 H 1.08001 * 119.97307 * 359.97438 * 7 6 4 31 31 H 1.08005 * 119.99046 * 179.72669 * 8 7 6 32 32 H 1.08002 * 120.01129 * 180.02562 * 9 8 7 33 33 H 1.07996 * 120.01157 * 359.95289 * 12 6 4 34 34 H 1.09000 * 109.47003 * 302.57486 * 14 13 4 35 35 H 1.08994 * 109.55250 * 182.47152 * 14 13 4 36 36 H 1.08995 * 109.67640 * 187.99591 * 15 14 13 37 37 H 1.08994 * 109.67670 * 67.44999 * 15 14 13 38 38 H 0.96993 * 120.00280 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0463 -0.7329 1.2435 5 1 1.5745 -1.7132 1.3104 6 6 1.7151 0.0702 2.4749 7 6 0.6252 -0.2749 3.2526 8 6 0.3199 0.4611 4.3820 9 6 1.1037 1.5436 4.7349 10 6 2.1952 1.8900 3.9570 11 9 2.9616 2.9481 4.3008 12 6 2.5004 1.1515 2.8261 13 8 3.4637 -0.8909 1.1434 14 6 3.8869 -1.6883 0.0350 15 6 3.4648 -1.0043 -1.2705 16 7 2.0264 -0.7039 -1.1930 17 6 1.1883 -1.0626 -2.1858 18 8 0.0216 -0.7181 -2.1513 19 6 1.6814 -1.8662 -3.3054 20 1 2.7435 -2.0048 -3.4441 21 6 0.7761 -2.4553 -4.1967 22 7 1.2084 -2.9958 -5.3052 23 14 -1.0496 -2.4685 -3.8013 24 1 -1.6612 -1.1899 -4.2440 25 1 -1.7012 -3.6000 -4.5087 26 1 -1.2376 -2.6263 -2.3366 27 1 -0.3633 0.3797 0.9550 28 1 -0.3633 0.6372 -0.8063 29 1 -0.3634 -1.0168 -0.1486 30 1 0.0115 -1.1197 2.9769 31 1 -0.5343 0.1933 4.9863 32 1 0.8651 2.1183 5.6177 33 1 3.3519 1.4207 2.2187 34 1 3.4224 -2.6724 0.0970 35 1 4.9713 -1.7955 0.0557 36 1 3.6561 -1.6700 -2.1121 37 1 4.0267 -0.0792 -1.3985 38 1 0.5813 -3.4035 -5.9227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570635351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:28 Heat of formation + Delta-G solvation = -91.412552 kcal Electronic energy + Delta-G solvation = -23989.175352 eV Core-core repulsion = 20325.450568 eV Total energy + Delta-G solvation = -3663.724784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.93388 -40.18866 -38.68141 -37.24643 -33.93124 -33.48148 -32.81789 -30.78000 -30.21755 -28.21076 -26.32732 -25.94505 -23.09966 -22.61538 -22.14898 -20.94904 -19.01384 -17.63510 -16.87759 -16.57749 -16.24456 -16.07923 -15.67275 -15.51763 -15.21346 -14.76558 -14.65064 -14.38565 -13.90670 -13.83807 -13.23143 -12.83222 -12.55068 -12.42342 -12.29613 -12.01053 -11.91425 -11.59390 -11.52945 -11.32840 -10.96768 -10.85025 -10.68959 -10.49164 -10.42089 -9.86743 -9.43300 -9.07724 -9.05176 -8.75846 -7.61145 -7.51093 -6.70235 -4.92633 1.03293 1.13580 3.38339 3.39924 3.45717 3.65204 3.83354 3.96245 4.13052 4.17053 4.46601 4.63582 4.79685 4.98278 5.04612 5.17637 5.23314 5.30659 5.36182 5.47104 5.59750 5.63614 5.77223 5.80736 5.91532 5.96088 6.03938 6.10629 6.18893 6.27033 6.32133 6.43326 6.70724 6.79818 6.90117 7.08399 7.31083 7.51132 7.78862 8.21002 8.62578 9.03635 9.95132 10.30147 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026008 B = 0.004565 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.335215 B = 6132.358734 C = 6743.007322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.132 3.868 3 H 0.060 0.940 4 C 0.119 3.881 5 H 0.073 0.927 6 C -0.040 4.040 7 C -0.115 4.115 8 C -0.093 4.093 9 C -0.156 4.156 10 C 0.093 3.907 11 F -0.142 7.142 12 C -0.126 4.126 13 O -0.380 6.380 14 C 0.048 3.952 15 C 0.084 3.916 16 N -0.633 5.633 17 C 0.555 3.445 18 O -0.606 6.606 19 C -0.535 4.535 20 H 0.090 0.910 21 C 0.103 3.897 22 N -0.825 5.825 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.323 1.323 26 H -0.266 1.266 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 4.095 16.386 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.027 3.973 3 H 0.078 0.922 4 C 0.060 3.940 5 H 0.091 0.909 6 C -0.041 4.041 7 C -0.134 4.134 8 C -0.111 4.111 9 C -0.175 4.175 10 C 0.074 3.926 11 F -0.121 7.121 12 C -0.145 4.145 13 O -0.299 6.299 14 C -0.029 4.029 15 C -0.040 4.040 16 N -0.368 5.368 17 C 0.366 3.634 18 O -0.498 6.498 19 C -0.570 4.570 20 H 0.107 0.893 21 C -0.116 4.116 22 N -0.454 5.454 23 Si 0.801 3.199 24 H -0.204 1.204 25 H -0.255 1.255 26 H -0.191 1.191 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.788 4.306 16.344 16.996 hybrid contribution -0.460 0.042 -0.111 0.475 sum 1.328 4.348 16.233 16.858 Atomic orbital electron populations 1.22091 0.92226 1.04436 0.99897 1.21510 0.96463 0.94803 0.84514 0.92182 1.21386 0.82766 0.97826 0.91983 0.90884 1.19413 0.94763 0.94770 0.95106 1.21088 0.97156 1.00614 0.94515 1.20931 0.99126 0.94386 0.96634 1.21127 0.95665 0.99693 1.01043 1.17693 0.91913 0.86862 0.96179 1.91489 1.74382 1.54272 1.91941 1.20999 1.01401 0.95621 0.96470 1.87863 1.20910 1.72627 1.48540 1.23058 0.99982 0.93879 0.85982 1.22215 0.82546 1.00519 0.98694 1.47850 1.07366 1.62187 1.19388 1.18259 0.83930 0.79740 0.81480 1.90244 1.18777 1.60934 1.79846 1.20787 0.96123 1.31970 1.08107 0.89258 1.25770 1.02821 0.90666 0.92319 1.69561 1.38535 1.29494 1.07859 0.85189 0.80062 0.75720 0.78911 1.20373 1.25470 1.19144 0.94980 0.89817 0.91458 0.85077 0.84885 0.84945 0.84271 0.92578 0.88203 0.87309 0.92599 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.57 37.16 0.28 -2.17 16 2 C 0.13 2.42 3.11 -67.42 -0.21 2.21 16 3 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 4 C 0.12 1.88 2.44 -27.73 -0.07 1.81 16 5 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 6 C -0.04 -0.55 4.36 -104.63 -0.46 -1.00 16 7 C -0.12 -1.36 8.63 -39.58 -0.34 -1.70 16 8 C -0.09 -0.93 10.04 -39.59 -0.40 -1.33 16 9 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 10 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 11 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 12 C -0.13 -1.71 9.32 -39.51 -0.37 -2.08 16 13 O -0.38 -5.99 9.71 -35.23 -0.34 -6.33 16 14 C 0.05 0.71 6.98 37.31 0.26 0.97 16 15 C 0.08 1.47 6.56 -3.53 -0.02 1.45 16 16 N -0.63 -13.27 3.02 -166.40 -0.50 -13.77 16 17 C 0.56 14.07 7.10 -12.98 -0.09 13.98 16 18 O -0.61 -16.28 8.19 5.20 0.04 -16.23 16 19 C -0.53 -14.40 9.36 -35.63 -0.33 -14.73 16 20 H 0.09 2.38 6.01 -52.49 -0.32 2.06 16 21 C 0.10 2.83 5.52 -17.37 -0.10 2.73 16 22 N -0.83 -22.77 13.92 55.55 0.77 -22.00 16 23 Si 0.97 24.64 25.83 -169.99 -4.39 20.25 16 24 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.32 -7.86 7.11 56.52 0.40 -7.46 16 26 H -0.27 -6.97 6.71 56.52 0.38 -6.59 16 27 H 0.03 0.51 6.48 -51.93 -0.34 0.17 16 28 H 0.08 1.79 6.62 -51.93 -0.34 1.45 16 29 H 0.07 1.42 6.98 -51.93 -0.36 1.06 16 30 H 0.13 1.39 8.04 -52.49 -0.42 0.97 16 31 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.91 7.78 -52.49 -0.41 1.50 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.11 2.01 5.43 -51.93 -0.28 1.73 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.28 7.20 8.29 -40.82 -0.34 6.86 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -30.31 309.45 -6.82 -37.14 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.58 Total: -0.85 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.53 Total: -1.05 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.27 Total: -35.77 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.30 Total: -22.56 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.39 Total: 20.25 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.31 -6.82 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570635351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.276 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds