Wall clock time and date at job start Tue Mar 31 2020 07:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.67846 * 2 1 4 4 C 1.53300 * 109.68161 * 120.51425 * 2 1 3 5 5 H 1.09001 * 109.51109 * 52.08868 * 4 2 1 6 6 C 1.50698 * 109.51164 * 291.98651 * 4 2 1 7 7 C 1.38268 * 119.98887 * 100.09983 * 6 4 2 8 8 C 1.38219 * 120.05468 * 180.02562 * 7 6 4 9 9 C 1.38222 * 120.02354 * 0.02562 * 8 7 6 10 10 C 1.38437 * 119.97458 * 359.97438 * 9 8 7 11 11 F 1.35101 * 120.02227 * 179.97438 * 10 9 8 12 12 C 1.38176 * 119.98720 * 280.12329 * 6 4 2 13 13 O 1.42965 * 109.26540 * 172.03747 * 4 2 1 14 14 C 1.42955 * 114.16864 * 297.50185 * 13 4 2 15 15 C 1.53304 * 109.26460 * 62.49615 * 14 13 4 16 16 N 1.47145 * 109.71456 * 239.45989 * 2 1 3 17 17 C 1.34783 * 120.98082 * 9.74149 * 16 2 1 18 18 O 1.21690 * 119.99505 * 5.49752 * 17 16 2 19 19 C 1.46373 * 120.00218 * 185.48761 * 17 16 2 20 20 H 1.07999 * 119.99604 * 347.68760 * 19 17 16 21 21 C 1.40041 * 120.00036 * 167.68470 * 19 17 16 22 22 N 1.30679 * 120.00114 * 169.45858 * 21 19 17 23 23 Si 1.86803 * 120.00198 * 349.46248 * 21 19 17 24 24 H 1.48493 * 109.47248 * 84.87657 * 23 21 19 25 25 H 1.48505 * 109.47082 * 204.87780 * 23 21 19 26 26 H 1.48505 * 109.46722 * 324.87410 * 23 21 19 27 27 H 1.09004 * 109.46958 * 291.68371 * 1 2 3 28 28 H 1.09005 * 109.47014 * 51.68077 * 1 2 3 29 29 H 1.08998 * 109.47452 * 171.68526 * 1 2 3 30 30 H 1.08001 * 119.97307 * 359.97438 * 7 6 4 31 31 H 1.08005 * 119.99046 * 179.72669 * 8 7 6 32 32 H 1.08002 * 120.01129 * 180.02562 * 9 8 7 33 33 H 1.07996 * 120.01157 * 359.95289 * 12 6 4 34 34 H 1.09000 * 109.47003 * 302.57486 * 14 13 4 35 35 H 1.08994 * 109.55250 * 182.47152 * 14 13 4 36 36 H 1.08995 * 109.67640 * 187.99591 * 15 14 13 37 37 H 1.08994 * 109.67670 * 67.44999 * 15 14 13 38 38 H 0.96993 * 120.00280 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0463 -0.7329 1.2435 5 1 1.5745 -1.7132 1.3104 6 6 1.7151 0.0702 2.4749 7 6 0.6252 -0.2749 3.2526 8 6 0.3199 0.4611 4.3820 9 6 1.1037 1.5436 4.7349 10 6 2.1952 1.8900 3.9570 11 9 2.9616 2.9481 4.3008 12 6 2.5004 1.1515 2.8261 13 8 3.4637 -0.8909 1.1434 14 6 3.8869 -1.6883 0.0350 15 6 3.4648 -1.0043 -1.2705 16 7 2.0264 -0.7039 -1.1930 17 6 1.1883 -1.0626 -2.1858 18 8 0.0216 -0.7181 -2.1513 19 6 1.6814 -1.8662 -3.3054 20 1 2.7435 -2.0048 -3.4441 21 6 0.7761 -2.4553 -4.1967 22 7 1.2084 -2.9958 -5.3052 23 14 -1.0496 -2.4685 -3.8013 24 1 -1.6612 -1.1899 -4.2440 25 1 -1.7012 -3.6000 -4.5087 26 1 -1.2376 -2.6263 -2.3366 27 1 -0.3633 0.3797 0.9550 28 1 -0.3633 0.6372 -0.8063 29 1 -0.3634 -1.0168 -0.1486 30 1 0.0115 -1.1197 2.9769 31 1 -0.5343 0.1933 4.9863 32 1 0.8651 2.1183 5.6177 33 1 3.3519 1.4207 2.2187 34 1 3.4224 -2.6724 0.0970 35 1 4.9713 -1.7955 0.0557 36 1 3.6561 -1.6700 -2.1121 37 1 4.0267 -0.0792 -1.3985 38 1 0.5813 -3.4035 -5.9227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570635351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:27 Heat of formation + Delta-G solvation = -109.997088 kcal Electronic energy + Delta-G solvation = -23989.981238 eV Core-core repulsion = 20325.450568 eV Total energy + Delta-G solvation = -3664.530670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.89297 -41.54355 -39.93558 -38.77980 -35.58370 -35.11723 -34.52973 -31.79680 -31.30553 -29.75972 -28.24657 -27.22055 -24.32378 -23.89479 -23.32745 -22.23651 -20.75103 -18.90043 -18.42770 -17.98580 -17.63606 -17.12973 -16.90776 -16.78276 -16.56005 -16.39188 -16.12555 -15.70207 -15.46389 -14.76593 -14.53088 -14.27612 -14.19678 -14.12326 -13.74988 -13.40418 -13.22729 -13.12815 -12.98336 -12.72851 -12.60900 -12.41377 -12.17493 -11.97249 -11.85240 -11.50334 -11.19593 -11.04753 -10.02058 -9.71535 -9.50112 -9.19945 -8.80433 -7.02430 0.10606 0.23430 1.32266 1.38201 1.59497 2.07141 2.23387 2.43615 2.58247 2.72707 3.21812 3.29850 3.68292 3.71067 3.84889 3.94834 4.07257 4.14596 4.22468 4.27286 4.32585 4.41265 4.47953 4.54955 4.75129 4.80089 4.85501 4.92016 5.06682 5.07875 5.11809 5.16584 5.32366 5.44075 5.48515 5.64105 5.90200 5.92468 6.08822 6.18683 6.60149 7.08915 7.97032 8.24542 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026008 B = 0.004565 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.335215 B = 6132.358734 C = 6743.007322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.128 3.872 3 H 0.062 0.938 4 C 0.130 3.870 5 H 0.069 0.931 6 C -0.058 4.058 7 C -0.119 4.119 8 C -0.082 4.082 9 C -0.147 4.147 10 C 0.078 3.922 11 F -0.148 7.148 12 C -0.138 4.138 13 O -0.381 6.381 14 C 0.054 3.946 15 C 0.079 3.921 16 N -0.635 5.635 17 C 0.554 3.446 18 O -0.626 6.626 19 C -0.553 4.553 20 H 0.085 0.915 21 C 0.072 3.928 22 N -0.848 5.848 23 Si 1.012 2.988 24 H -0.294 1.294 25 H -0.304 1.304 26 H -0.281 1.281 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.142 0.858 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.129 0.871 34 H 0.053 0.947 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 4.268 18.926 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.024 3.976 3 H 0.080 0.920 4 C 0.071 3.929 5 H 0.087 0.913 6 C -0.058 4.058 7 C -0.137 4.137 8 C -0.100 4.100 9 C -0.165 4.165 10 C 0.059 3.941 11 F -0.127 7.127 12 C -0.156 4.156 13 O -0.300 6.300 14 C -0.022 4.022 15 C -0.044 4.044 16 N -0.369 5.369 17 C 0.362 3.638 18 O -0.519 6.519 19 C -0.589 4.589 20 H 0.102 0.898 21 C -0.144 4.144 22 N -0.479 5.479 23 Si 0.845 3.155 24 H -0.221 1.221 25 H -0.234 1.234 26 H -0.207 1.207 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.160 0.840 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.519 4.470 18.896 19.477 hybrid contribution -0.323 0.066 -0.814 0.878 sum 1.196 4.537 18.082 18.681 Atomic orbital electron populations 1.21858 0.92682 1.02316 1.00499 1.21685 0.96151 0.95076 0.84681 0.92012 1.21216 0.82624 0.97515 0.91550 0.91284 1.19294 0.96199 0.95219 0.95125 1.21329 0.96442 1.01133 0.94816 1.21326 0.99571 0.93204 0.95869 1.21495 0.94297 0.99577 1.01162 1.17875 0.92806 0.86949 0.96508 1.91473 1.74729 1.54557 1.91962 1.20953 1.01454 0.96121 0.97117 1.87889 1.20888 1.72677 1.48522 1.23121 1.02040 0.93017 0.84068 1.22406 0.80674 1.01214 1.00100 1.47829 1.08447 1.61428 1.19243 1.18175 0.84083 0.79517 0.82052 1.90239 1.19711 1.61549 1.80448 1.21021 0.96103 1.32660 1.09105 0.89752 1.26239 1.04835 0.90832 0.92493 1.69567 1.39511 1.30447 1.08373 0.84565 0.77863 0.75350 0.77745 1.22096 1.23431 1.20743 0.91676 0.92713 0.93860 0.83979 0.81291 0.82229 0.85271 0.92867 0.84605 0.88568 0.91342 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 7.57 71.98 0.54 -3.85 16 2 C 0.13 4.63 3.11 44.97 0.14 4.77 16 3 H 0.06 2.23 8.12 -2.38 -0.02 2.21 16 4 C 0.13 3.93 2.44 29.95 0.07 4.00 16 5 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 6 C -0.06 -1.48 4.36 -19.87 -0.09 -1.57 16 7 C -0.12 -2.45 8.63 22.27 0.19 -2.26 16 8 C -0.08 -1.30 10.04 22.26 0.22 -1.08 16 9 C -0.15 -2.57 10.03 22.31 0.22 -2.35 16 10 C 0.08 1.80 7.30 22.38 0.16 1.96 16 11 F -0.15 -3.65 17.27 44.97 0.78 -2.87 16 12 C -0.14 -3.54 9.32 22.31 0.21 -3.33 16 13 O -0.38 -11.39 9.71 -148.98 -1.45 -12.84 16 14 C 0.05 1.52 6.98 72.08 0.50 2.02 16 15 C 0.08 2.73 6.56 86.36 0.57 3.29 16 16 N -0.64 -26.73 3.02 -798.57 -2.41 -29.14 16 17 C 0.55 28.49 7.10 86.36 0.61 29.10 16 18 O -0.63 -34.24 8.19 -4.32 -0.04 -34.28 16 19 C -0.55 -30.35 9.36 24.83 0.23 -30.11 16 20 H 0.08 4.60 6.01 -2.91 -0.02 4.59 16 21 C 0.07 4.00 5.52 85.30 0.47 4.47 16 22 N -0.85 -47.12 13.92 21.83 0.30 -46.82 16 23 Si 1.01 51.29 25.83 68.60 1.77 53.06 16 24 H -0.29 -15.52 7.11 99.48 0.71 -14.82 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.28 -14.79 6.71 99.48 0.67 -14.13 16 27 H 0.06 1.98 6.48 -2.39 -0.02 1.96 16 28 H 0.05 2.37 6.62 -2.38 -0.02 2.35 16 29 H 0.04 1.82 6.98 -2.39 -0.02 1.81 16 30 H 0.14 2.59 8.04 -2.91 -0.02 2.57 16 31 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.13 3.48 7.78 -2.91 -0.02 3.46 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.10 3.58 5.43 -2.39 -0.01 3.56 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.29 14.83 8.29 -92.71 -0.77 14.06 16 Total: -1.00 -65.80 309.45 4.07 -61.73 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.04 Total: 6.08 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 4.07 Total: 5.08 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -2.11 Total: -75.96 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -1.48 Total: -47.12 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 1.77 Total: 53.06 kcal Total: -65.80 4.07 -61.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570635351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.271 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds