Wall clock time and date at job start Tue Mar 31 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46966 * 2 1 4 4 H 1.09002 * 109.46598 * 305.01877 * 3 2 1 5 5 C 1.50702 * 109.46867 * 185.01925 * 3 2 1 6 6 H 1.07999 * 119.99369 * 245.66240 * 5 3 2 7 7 C 1.37877 * 119.99874 * 65.66174 * 5 3 2 8 8 N 1.31519 * 119.99545 * 196.15714 * 7 5 3 9 9 Si 1.86801 * 120.00371 * 16.16177 * 7 5 3 10 10 H 1.48498 * 109.46901 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46946 * 299.99768 * 9 7 5 12 12 H 1.48495 * 109.47152 * 59.99644 * 9 7 5 13 13 N 1.46498 * 109.47205 * 65.01705 * 3 2 1 14 14 C 1.34780 * 120.00007 * 275.00031 * 13 3 2 15 15 O 1.21580 * 120.00050 * 359.97438 * 14 13 3 16 16 N 1.34769 * 119.99801 * 179.97438 * 14 13 3 17 17 C 1.39566 * 119.99819 * 184.51860 * 16 14 13 18 18 C 1.39336 * 120.82677 * 324.02906 * 17 16 14 19 19 C 1.38307 * 119.27788 * 179.70087 * 18 17 16 20 20 N 1.31605 * 120.98627 * 0.58901 * 19 18 17 21 21 C 1.32840 * 121.81457 * 359.70692 * 20 19 18 22 22 C 1.48079 * 119.69577 * 180.02562 * 21 20 19 23 23 O 1.21427 * 120.00100 * 179.97438 * 22 21 20 24 24 O 1.34672 * 120.00305 * 359.97415 * 22 21 20 25 25 C 1.39114 * 120.60600 * 359.97438 * 21 20 19 26 26 H 1.09004 * 109.47009 * 60.00121 * 1 2 3 27 27 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47172 * 300.00221 * 1 2 3 29 29 H 1.08997 * 109.47172 * 239.99779 * 2 1 3 30 30 H 1.08998 * 109.47254 * 119.99492 * 2 1 3 31 31 H 0.96993 * 119.99960 * 354.94293 * 8 7 5 32 32 H 0.97002 * 119.99968 * 94.99712 * 13 3 2 33 33 H 0.96999 * 120.00416 * 4.52754 * 16 14 13 34 34 H 1.08006 * 120.36142 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.50781 * 180.31810 * 19 18 17 36 36 H 0.96695 * 117.00284 * 179.97438 * 24 22 21 37 37 H 1.08004 * 120.51729 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1243 6 1 4.1507 1.8055 0.6914 7 6 4.1386 0.9850 -1.2793 8 7 5.4192 0.6854 -1.2835 9 14 3.1282 0.7883 -2.8381 10 1 3.9975 0.2833 -3.9310 11 1 2.0262 -0.1771 -2.5952 12 1 2.5577 2.1029 -3.2274 13 7 1.6528 2.0974 1.2520 14 6 0.4355 2.6643 1.3675 15 8 -0.3411 2.6326 0.4326 16 7 0.0791 3.2663 2.5194 17 6 -1.2134 3.7700 2.6727 18 6 -1.8862 4.3489 1.5985 19 6 -3.1685 4.8323 1.7848 20 7 -3.7544 4.7632 2.9612 21 6 -3.1493 4.2254 4.0145 22 6 -3.8528 4.1715 5.3164 23 8 -3.3050 3.6808 6.2826 24 8 -5.1001 4.6667 5.4288 25 6 -1.8612 3.7116 3.9053 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 5.9598 0.8564 -0.4966 32 1 2.2725 2.1230 1.9978 33 1 0.7209 3.3496 3.2419 34 1 -1.4134 4.4147 0.6297 35 1 -3.6954 5.2770 0.9535 36 1 -5.5187 4.6087 6.2985 37 1 -1.3707 3.2743 4.7624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573776162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:07 Heat of formation + Delta-G solvation = -79.785735 kcal Electronic energy + Delta-G solvation = -22983.738779 eV Core-core repulsion = 19340.438132 eV Total energy + Delta-G solvation = -3643.300646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16805 -40.23928 -39.17986 -36.39251 -36.13379 -34.78969 -32.70455 -31.82344 -31.74434 -30.35713 -27.26983 -25.67886 -23.64702 -22.66198 -22.24327 -20.89945 -19.90146 -18.95566 -18.61477 -17.97698 -17.23332 -16.54860 -16.15450 -16.01828 -15.73194 -15.34708 -14.92537 -14.39855 -13.98889 -13.85630 -13.62202 -13.44534 -12.84623 -12.67389 -12.47177 -12.24939 -11.91825 -11.83110 -11.18979 -11.02659 -10.95060 -10.79956 -10.52667 -10.19779 -9.96598 -9.70864 -9.57920 -9.42643 -9.14888 -8.78708 -8.43689 -8.24378 -6.67360 -4.32219 0.33154 0.96172 2.18969 2.45156 2.86842 3.31837 3.36263 3.38501 3.53474 3.68716 4.08260 4.33773 4.45301 4.72131 4.74663 4.79912 5.07813 5.26664 5.39756 5.46378 5.87630 5.99306 6.02235 6.10360 6.14200 6.18854 6.51359 6.57440 6.71697 6.80424 6.88101 6.98203 7.27796 7.31909 7.41409 7.59934 7.74419 8.14255 8.38450 8.60839 8.86767 9.37412 10.73793 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.033649 B = 0.003326 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.914794 B = 8416.011474 C = 8658.987824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.264 3.736 4 H 0.044 0.956 5 C -0.619 4.619 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.896 5.896 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.706 5.706 14 C 0.694 3.306 15 O -0.575 6.575 16 N -0.691 5.691 17 C 0.216 3.784 18 C -0.139 4.139 19 C 0.112 3.888 20 N -0.454 5.454 21 C 0.100 3.900 22 C 0.547 3.453 23 O -0.509 6.509 24 O -0.492 6.492 25 C -0.140 4.140 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.392 0.608 33 H 0.409 0.591 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.412 0.588 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.288 7.179 10.165 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 C 0.160 3.840 4 H 0.062 0.938 5 C -0.657 4.657 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.529 5.529 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.357 5.357 14 C 0.395 3.605 15 O -0.452 6.452 16 N -0.339 5.339 17 C 0.110 3.890 18 C -0.162 4.162 19 C -0.047 4.047 20 N -0.167 5.167 21 C -0.037 4.037 22 C 0.390 3.610 23 O -0.397 6.397 24 O -0.302 6.302 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.246 0.754 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.270 0.730 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.275 6.737 7.673 19.213 hybrid contribution 1.264 0.155 2.910 3.176 sum -15.011 6.892 10.583 19.617 Atomic orbital electron populations 1.21862 0.97292 0.98909 1.01867 1.22399 0.93872 0.99748 1.02009 1.19041 0.95633 0.88275 0.81028 0.93816 1.22074 0.89471 1.49791 1.04397 0.92015 1.25692 0.97403 0.92288 1.01295 1.70880 1.07319 1.40638 1.34015 0.84115 0.75525 0.77765 0.75837 1.20853 1.19425 1.20532 1.45600 1.13052 1.57888 1.19124 1.16088 0.83769 0.78678 0.82008 1.90896 1.51783 1.64763 1.37780 1.42758 1.11428 1.60936 1.18766 1.17565 0.85538 0.92472 0.93412 1.22742 0.96564 0.95600 1.01254 1.22756 0.91889 0.95963 0.94086 1.67634 1.36277 1.13683 0.99097 1.19535 0.91441 1.01271 0.91434 1.20466 0.79498 0.73756 0.87328 1.90908 1.67272 1.42594 1.38918 1.84686 1.29215 1.75186 1.41066 1.21771 0.94312 1.01596 0.98691 0.92898 0.95077 0.93538 0.91079 0.93036 0.92036 0.77471 0.75449 0.81990 0.81368 0.73018 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.51 37.16 0.32 -2.44 16 2 C -0.14 -3.00 5.28 -26.73 -0.14 -3.14 16 3 C 0.26 5.87 1.82 -69.08 -0.13 5.74 16 4 H 0.04 1.06 6.25 -51.93 -0.32 0.74 16 5 C -0.62 -15.87 9.01 -34.44 -0.31 -16.18 16 6 H 0.06 1.65 7.96 -52.49 -0.42 1.24 16 7 C 0.04 1.09 5.32 -17.82 -0.09 0.99 16 8 N -0.90 -25.84 13.70 55.43 0.76 -25.08 16 9 Si 1.04 24.04 26.27 -169.99 -4.47 19.57 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -5.77 5.65 56.52 0.32 -5.45 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.71 -12.88 5.03 -59.81 -0.30 -13.18 16 14 C 0.69 11.84 6.99 -86.92 -0.61 11.23 16 15 O -0.57 -11.28 11.03 5.30 0.06 -11.22 16 16 N -0.69 -8.89 5.35 -14.08 -0.08 -8.96 16 17 C 0.22 2.76 6.32 -83.51 -0.53 2.23 16 18 C -0.14 -1.77 8.77 -39.15 -0.34 -2.12 16 19 C 0.11 1.27 11.17 -17.62 -0.20 1.07 16 20 N -0.45 -5.71 10.12 -9.89 -0.10 -5.81 16 21 C 0.10 1.24 6.74 -83.07 -0.56 0.68 16 22 C 0.55 6.33 8.32 34.77 0.29 6.62 16 23 O -0.51 -6.72 17.11 -19.21 -0.33 -7.05 16 24 O -0.49 -4.42 13.24 -40.42 -0.54 -4.96 16 25 C -0.14 -1.65 9.58 -38.84 -0.37 -2.02 16 26 H 0.05 1.06 7.85 -51.93 -0.41 0.66 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.90 5.64 -51.93 -0.29 0.61 16 29 H 0.07 1.59 4.72 -51.93 -0.25 1.34 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.27 7.69 8.73 -40.82 -0.36 7.33 16 32 H 0.39 6.27 8.54 -40.82 -0.35 5.92 16 33 H 0.41 3.98 8.84 -40.82 -0.36 3.62 16 34 H 0.16 2.26 6.39 -52.48 -0.34 1.92 16 35 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.41 1.52 9.11 45.56 0.42 1.94 16 37 H 0.15 1.57 7.64 -52.48 -0.40 1.17 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -32.46 315.57 -6.13 -38.58 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -3.22 Total: 10.69 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.67 Total: 2.67 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.28 Total: -53.04 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.81 Total: -23.23 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -4.47 Total: 19.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.46 -6.13 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573776162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.201 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds