Wall clock time and date at job start Tue Mar 31 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46966 * 2 1 4 4 H 1.09002 * 109.46598 * 305.01877 * 3 2 1 5 5 C 1.50702 * 109.46867 * 185.01925 * 3 2 1 6 6 H 1.07999 * 119.99369 * 245.66240 * 5 3 2 7 7 C 1.37877 * 119.99874 * 65.66174 * 5 3 2 8 8 N 1.31519 * 119.99545 * 196.15714 * 7 5 3 9 9 Si 1.86801 * 120.00371 * 16.16177 * 7 5 3 10 10 H 1.48498 * 109.46901 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46946 * 299.99768 * 9 7 5 12 12 H 1.48495 * 109.47152 * 59.99644 * 9 7 5 13 13 N 1.46498 * 109.47205 * 65.01705 * 3 2 1 14 14 C 1.34780 * 120.00007 * 275.00031 * 13 3 2 15 15 O 1.21580 * 120.00050 * 359.97438 * 14 13 3 16 16 N 1.34769 * 119.99801 * 179.97438 * 14 13 3 17 17 C 1.39566 * 119.99819 * 184.51860 * 16 14 13 18 18 C 1.39336 * 120.82677 * 324.02906 * 17 16 14 19 19 C 1.38307 * 119.27788 * 179.70087 * 18 17 16 20 20 N 1.31605 * 120.98627 * 0.58901 * 19 18 17 21 21 C 1.32840 * 121.81457 * 359.70692 * 20 19 18 22 22 C 1.48079 * 119.69577 * 180.02562 * 21 20 19 23 23 O 1.21427 * 120.00100 * 179.97438 * 22 21 20 24 24 O 1.34672 * 120.00305 * 359.97415 * 22 21 20 25 25 C 1.39114 * 120.60600 * 359.97438 * 21 20 19 26 26 H 1.09004 * 109.47009 * 60.00121 * 1 2 3 27 27 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47172 * 300.00221 * 1 2 3 29 29 H 1.08997 * 109.47172 * 239.99779 * 2 1 3 30 30 H 1.08998 * 109.47254 * 119.99492 * 2 1 3 31 31 H 0.96993 * 119.99960 * 354.94293 * 8 7 5 32 32 H 0.97002 * 119.99968 * 94.99712 * 13 3 2 33 33 H 0.96999 * 120.00416 * 4.52754 * 16 14 13 34 34 H 1.08006 * 120.36142 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.50781 * 180.31810 * 19 18 17 36 36 H 0.96695 * 117.00284 * 179.97438 * 24 22 21 37 37 H 1.08004 * 120.51729 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1243 6 1 4.1507 1.8055 0.6914 7 6 4.1386 0.9850 -1.2793 8 7 5.4192 0.6854 -1.2835 9 14 3.1282 0.7883 -2.8381 10 1 3.9975 0.2833 -3.9310 11 1 2.0262 -0.1771 -2.5952 12 1 2.5577 2.1029 -3.2274 13 7 1.6528 2.0974 1.2520 14 6 0.4355 2.6643 1.3675 15 8 -0.3411 2.6326 0.4326 16 7 0.0791 3.2663 2.5194 17 6 -1.2134 3.7700 2.6727 18 6 -1.8862 4.3489 1.5985 19 6 -3.1685 4.8323 1.7848 20 7 -3.7544 4.7632 2.9612 21 6 -3.1493 4.2254 4.0145 22 6 -3.8528 4.1715 5.3164 23 8 -3.3050 3.6808 6.2826 24 8 -5.1001 4.6667 5.4288 25 6 -1.8612 3.7116 3.9053 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 5.9598 0.8564 -0.4966 32 1 2.2725 2.1230 1.9978 33 1 0.7209 3.3496 3.2419 34 1 -1.4134 4.4147 0.6297 35 1 -3.6954 5.2770 0.9535 36 1 -5.5187 4.6087 6.2985 37 1 -1.3707 3.2743 4.7624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573776162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:06 Heat of formation + Delta-G solvation = -105.252604 kcal Electronic energy + Delta-G solvation = -22984.843105 eV Core-core repulsion = 19340.438132 eV Total energy + Delta-G solvation = -3644.404972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19769 -41.32010 -40.24641 -37.61210 -37.19896 -36.13967 -34.54245 -33.38288 -32.67705 -31.54834 -29.04927 -26.61787 -24.80658 -24.16591 -23.50864 -22.12415 -21.48337 -20.35168 -19.80724 -18.92865 -18.84466 -17.59572 -17.21683 -17.00932 -16.83193 -16.67359 -16.21595 -15.68611 -15.21180 -15.13600 -14.79180 -14.55255 -14.46276 -14.38324 -14.18082 -13.66029 -13.25609 -12.69282 -12.64067 -12.50207 -12.30388 -12.17947 -12.00499 -11.77196 -11.47652 -11.33209 -11.06781 -10.71208 -10.47894 -10.39365 -10.03619 -9.65668 -8.79274 -6.44466 -0.60403 0.00307 1.27940 1.42028 1.48523 1.53060 1.71606 1.91226 2.06821 2.43525 2.71537 3.02352 3.14970 3.30429 3.75812 3.84556 3.85665 4.32249 4.34855 4.41125 4.47422 4.54127 4.58875 4.82748 4.92173 5.11132 5.18146 5.20568 5.28134 5.40706 5.53460 5.55199 5.58656 5.63997 5.97259 6.03492 6.52915 6.59467 6.96016 7.01230 7.29651 7.48993 8.60899 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.033649 B = 0.003326 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.914794 B = 8416.011474 C = 8658.987824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C 0.271 3.729 4 H 0.029 0.971 5 C -0.612 4.612 6 H 0.041 0.959 7 C -0.005 4.005 8 N -0.930 5.930 9 Si 1.070 2.930 10 H -0.287 1.287 11 H -0.242 1.242 12 H -0.270 1.270 13 N -0.709 5.709 14 C 0.698 3.302 15 O -0.599 6.599 16 N -0.674 5.674 17 C 0.202 3.798 18 C -0.147 4.147 19 C 0.119 3.881 20 N -0.463 5.463 21 C 0.088 3.912 22 C 0.553 3.447 23 O -0.530 6.530 24 O -0.489 6.489 25 C -0.131 4.131 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.258 0.742 32 H 0.403 0.597 33 H 0.425 0.575 34 H 0.150 0.850 35 H 0.198 0.802 36 H 0.434 0.566 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 7.449 10.770 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.177 4.177 3 C 0.166 3.834 4 H 0.047 0.953 5 C -0.651 4.651 6 H 0.059 0.941 7 C -0.206 4.206 8 N -0.565 5.565 9 Si 0.893 3.107 10 H -0.213 1.213 11 H -0.167 1.167 12 H -0.196 1.196 13 N -0.361 5.361 14 C 0.399 3.601 15 O -0.478 6.478 16 N -0.324 5.324 17 C 0.098 3.902 18 C -0.170 4.170 19 C -0.040 4.040 20 N -0.176 5.176 21 C -0.048 4.048 22 C 0.396 3.604 23 O -0.419 6.419 24 O -0.301 6.301 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.237 0.763 33 H 0.264 0.736 34 H 0.168 0.832 35 H 0.215 0.785 36 H 0.297 0.703 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.588 7.038 8.365 21.564 hybrid contribution 1.890 0.176 2.833 3.410 sum -16.698 7.214 11.198 21.360 Atomic orbital electron populations 1.21732 0.95524 1.00136 1.01396 1.22292 0.95326 0.98509 1.01584 1.18678 0.93145 0.89291 0.82318 0.95288 1.22276 0.91442 1.48017 1.03318 0.94116 1.26814 0.97508 0.92104 1.04145 1.70985 1.08427 1.43349 1.33726 0.83742 0.75215 0.78828 0.72964 1.21253 1.16682 1.19578 1.45269 1.14090 1.58383 1.18322 1.16033 0.82935 0.78461 0.82692 1.90883 1.52310 1.65572 1.39036 1.42417 1.12028 1.60023 1.17915 1.17680 0.85383 0.93157 0.94010 1.22743 0.97258 0.96223 1.00743 1.23175 0.91340 0.94995 0.94486 1.67699 1.36548 1.13912 0.99453 1.19792 0.91798 1.01254 0.91945 1.20302 0.79985 0.73410 0.86689 1.90904 1.67928 1.43680 1.39431 1.84634 1.28052 1.74354 1.43078 1.21828 0.94132 1.01004 0.98542 0.93713 0.92955 0.93635 0.92141 0.92851 0.93277 0.76273 0.73599 0.83191 0.78496 0.70342 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.51 71.98 0.61 -4.16 16 2 C -0.14 -5.66 5.28 30.60 0.16 -5.50 16 3 C 0.27 11.84 1.82 44.25 0.08 11.92 16 4 H 0.03 1.38 6.25 -2.39 -0.01 1.37 16 5 C -0.61 -31.56 9.01 25.60 0.23 -31.33 16 6 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 7 C 0.00 -0.27 5.32 84.65 0.45 0.18 16 8 N -0.93 -54.72 13.70 21.45 0.29 -54.43 16 9 Si 1.07 48.04 26.27 68.60 1.80 49.84 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.24 -9.82 5.65 99.48 0.56 -9.25 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.71 -25.14 5.03 -461.41 -2.32 -27.46 16 14 C 0.70 22.86 6.99 179.06 1.25 24.12 16 15 O -0.60 -22.75 11.03 -3.97 -0.04 -22.79 16 16 N -0.67 -16.24 5.35 -316.74 -1.69 -17.94 16 17 C 0.20 4.83 6.32 38.45 0.24 5.07 16 18 C -0.15 -3.53 8.77 22.55 0.20 -3.33 16 19 C 0.12 2.45 11.17 84.74 0.95 3.39 16 20 N -0.46 -10.66 10.12 -185.21 -1.87 -12.53 16 21 C 0.09 2.02 6.74 41.82 0.28 2.30 16 22 C 0.55 11.69 8.32 70.43 0.59 12.28 16 23 O -0.53 -13.04 17.11 20.07 0.34 -12.70 16 24 O -0.49 -7.62 13.24 -55.81 -0.74 -8.36 16 25 C -0.13 -2.85 9.58 22.75 0.22 -2.63 16 26 H 0.04 1.70 7.85 -2.38 -0.02 1.68 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.66 5.64 -2.39 -0.01 1.65 16 29 H 0.06 2.59 4.72 -2.39 -0.01 2.58 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.26 15.21 8.73 -92.71 -0.81 14.40 16 32 H 0.40 12.50 8.54 -92.71 -0.79 11.71 16 33 H 0.43 7.47 8.84 -92.71 -0.82 6.65 16 34 H 0.15 4.03 6.39 -2.91 -0.02 4.02 16 35 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.43 2.09 9.11 -74.06 -0.67 1.42 16 37 H 0.16 3.06 7.64 -2.91 -0.02 3.04 16 Total: -1.00 -69.08 315.57 -0.27 -69.36 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -1.30 Total: 24.69 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.26 Total: 12.32 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -5.59 Total: -112.36 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.44 Total: -43.85 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.80 Total: 49.84 kcal Total: -69.08 -0.27 -69.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573776162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.895 kcal (2) G-P(sol) polarization free energy of solvation -69.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds