Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47317 * 2 1 4 4 H 1.08998 * 109.46965 * 305.00185 * 3 2 1 5 5 N 1.46502 * 109.47052 * 65.00367 * 3 2 1 6 6 C 1.34777 * 119.99785 * 204.99938 * 5 3 2 7 7 O 1.21584 * 119.99863 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99721 * 179.97438 * 6 5 3 9 9 C 1.39458 * 119.99442 * 175.06043 * 8 6 5 10 10 C 1.38643 * 119.64375 * 174.22454 * 9 8 6 11 11 C 1.40821 * 118.67573 * 179.72371 * 10 9 8 12 12 C 1.41543 * 121.00136 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00434 * 147.46924 * 12 11 10 14 14 C 1.40032 * 119.99782 * 327.46850 * 12 11 10 15 15 N 1.30749 * 119.99828 * 359.81695 * 14 12 11 16 16 Si 1.86803 * 120.00143 * 179.82043 * 14 12 11 17 17 H 1.48502 * 109.47090 * 89.99962 * 16 14 12 18 18 H 1.48497 * 109.46912 * 210.00087 * 16 14 12 19 19 H 1.48492 * 109.46935 * 329.99864 * 16 14 12 20 20 C 1.41160 * 118.00267 * 359.97438 * 11 10 9 21 21 C 1.36594 * 119.13059 * 0.02562 * 20 11 10 22 22 N 1.32061 * 121.25622 * 359.97438 * 21 20 11 23 23 C 1.50701 * 109.46925 * 185.00176 * 3 2 1 24 24 O 1.20829 * 119.99563 * 239.99757 * 23 3 2 25 25 O 1.34223 * 120.00076 * 60.00188 * 23 3 2 26 26 H 1.08999 * 109.46841 * 300.00180 * 1 2 3 27 27 H 1.08998 * 109.46707 * 59.99464 * 1 2 3 28 28 H 1.08993 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47016 * 240.00296 * 2 1 3 30 30 H 1.08998 * 109.47437 * 120.00391 * 2 1 3 31 31 H 0.97002 * 119.99684 * 24.99357 * 5 3 2 32 32 H 0.96998 * 119.99877 * 355.06779 * 8 6 5 33 33 H 1.08004 * 120.66276 * 359.74179 * 10 9 8 34 34 H 0.97004 * 119.99404 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.43546 * 179.97438 * 20 11 10 36 36 H 1.08000 * 119.36854 * 179.97438 * 21 20 11 37 37 H 0.96701 * 116.99895 * 179.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6526 2.0975 1.2519 6 6 1.5258 3.4384 1.2996 7 8 1.7326 4.1044 0.3037 8 7 1.1689 4.0409 2.4512 9 6 1.1377 5.4330 2.5292 10 6 0.6553 6.0449 3.6759 11 6 0.6385 7.4518 3.7351 12 6 0.1561 8.1275 4.8814 13 1 0.5856 9.0755 5.1702 14 6 -0.8781 7.5670 5.6411 15 7 -1.4004 6.4211 5.2895 16 14 -1.5114 8.4563 7.1569 17 1 -2.6220 9.3634 6.7706 18 1 -2.0045 7.4624 8.1439 19 1 -0.4113 9.2499 7.7609 20 6 1.1173 8.1679 2.6168 21 6 1.5737 7.4771 1.5304 22 7 1.5749 6.1566 1.5091 23 6 3.5420 1.4442 -0.1239 24 8 4.2192 1.9416 0.7445 25 8 4.1274 0.8933 -1.1988 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.4872 1.5660 2.0463 32 1 0.9338 3.5063 3.2256 33 1 0.2997 5.4544 4.5074 34 1 -2.1166 6.0326 5.8160 35 1 1.1220 9.2479 2.6199 36 1 1.9405 8.0211 0.6726 37 1 5.0934 0.9188 -1.2339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573931340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = -82.684951 kcal Electronic energy + Delta-G solvation = -23068.834646 eV Core-core repulsion = 19425.408280 eV Total energy + Delta-G solvation = -3643.426366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65740 -39.53889 -38.08119 -36.21596 -35.80393 -34.23017 -33.71126 -32.17062 -30.46208 -28.81045 -27.48341 -25.95096 -22.87718 -22.40719 -21.85742 -20.84098 -20.16679 -18.30324 -18.01461 -17.67634 -16.95092 -16.13560 -15.69335 -15.35657 -14.99231 -14.60758 -14.26877 -14.16727 -13.98273 -13.71131 -13.51985 -12.83086 -12.76564 -12.56856 -12.40185 -12.20478 -11.70180 -11.43035 -11.38430 -11.25069 -11.16267 -10.88992 -10.62326 -10.28819 -10.11056 -9.74349 -9.66500 -9.37987 -9.08551 -7.86351 -7.75660 -6.99805 -6.68927 -4.61260 2.20621 2.55078 2.74226 2.83989 3.03858 3.08365 3.15007 3.25793 3.88239 3.91360 4.37834 4.51270 4.71506 4.75362 4.92300 5.20736 5.38468 5.41628 5.65467 5.68597 5.74493 5.93461 6.01180 6.43144 6.45333 6.53971 6.62012 6.80010 6.97738 7.16408 7.22747 7.41741 7.50718 7.87088 7.91084 8.11538 8.34176 8.48050 8.74628 8.80193 9.11266 9.71467 10.17664 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.003597 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.708743 B = 7781.692146 C = 8436.579136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.181 3.819 4 H 0.128 0.872 5 N -0.732 5.732 6 C 0.699 3.301 7 O -0.531 6.531 8 N -0.663 5.663 9 C 0.352 3.648 10 C -0.233 4.233 11 C 0.143 3.857 12 C -0.459 4.459 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.804 5.804 16 Si 0.917 3.083 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.276 4.276 21 C 0.116 3.884 22 N -0.548 5.548 23 C 0.461 3.539 24 O -0.499 6.499 25 O -0.519 6.519 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.398 0.602 32 H 0.405 0.595 33 H 0.134 0.866 34 H 0.279 0.721 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -14.273 -5.535 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.072 3.928 4 H 0.145 0.855 5 N -0.391 5.391 6 C 0.399 3.601 7 O -0.402 6.402 8 N -0.311 5.311 9 C 0.126 3.874 10 C -0.259 4.259 11 C 0.135 3.865 12 C -0.491 4.491 13 H 0.099 0.901 14 C -0.143 4.143 15 N -0.431 5.431 16 Si 0.742 3.258 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.300 4.300 21 C -0.038 4.038 22 N -0.267 5.267 23 C 0.300 3.700 24 O -0.385 6.385 25 O -0.331 6.331 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.240 0.760 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.537 -14.140 -6.910 15.942 hybrid contribution -0.161 0.347 2.227 2.260 sum 2.375 -13.793 -4.683 14.759 Atomic orbital electron populations 1.21770 0.93879 1.02160 1.03105 1.21778 0.97709 0.92582 1.04094 1.20207 0.86388 0.95990 0.90212 0.85463 1.44922 1.75243 1.06181 1.12727 1.15998 0.78514 0.81073 0.84510 1.91008 1.53646 1.62341 1.33204 1.42459 1.70077 1.05535 1.12980 1.17983 0.95941 0.81555 0.91950 1.21695 1.10178 0.95930 0.98088 1.17597 0.86584 0.90807 0.91522 1.19537 1.15980 1.05893 1.07690 0.90140 1.25909 0.95811 0.94509 0.98050 1.69727 1.21043 1.15861 1.36505 0.86167 0.79632 0.79694 0.80336 1.19459 1.20209 1.18569 1.21768 1.12913 0.99294 0.96026 1.21480 0.96621 0.89153 0.96532 1.67150 1.23939 1.07166 1.28442 1.24341 0.93014 0.73964 0.78694 1.90749 1.65497 1.41291 1.40958 1.84510 1.28630 1.74584 1.45360 0.91959 0.91985 0.91996 0.88974 0.90845 0.76729 0.76010 0.84818 0.90996 0.87904 0.85973 0.73428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.80 37.16 0.36 -0.76 16 2 C -0.12 -0.95 5.44 -26.73 -0.15 -1.09 16 3 C 0.18 2.17 2.48 -69.08 -0.17 2.00 16 4 H 0.13 1.66 7.58 -51.93 -0.39 1.27 16 5 N -0.73 -10.16 4.07 -59.81 -0.24 -10.40 16 6 C 0.70 13.79 8.34 -86.92 -0.73 13.07 16 7 O -0.53 -12.77 14.30 5.29 0.08 -12.69 16 8 N -0.66 -13.41 5.40 -15.86 -0.09 -13.50 16 9 C 0.35 8.76 7.40 -154.68 -1.15 7.61 16 10 C -0.23 -5.99 8.60 -38.46 -0.33 -6.32 16 11 C 0.14 3.82 5.57 -106.55 -0.59 3.22 16 12 C -0.46 -11.92 9.12 -37.65 -0.34 -12.27 16 13 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 14 C 0.07 1.80 5.41 -17.34 -0.09 1.71 16 15 N -0.80 -20.02 10.69 55.55 0.59 -19.42 16 16 Si 0.92 18.26 29.56 -169.99 -5.02 13.23 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.28 -6.88 9.85 -39.07 -0.38 -7.27 16 21 C 0.12 2.86 11.10 -18.05 -0.20 2.66 16 22 N -0.55 -14.44 7.90 -12.76 -0.10 -14.54 16 23 C 0.46 6.23 7.66 36.01 0.28 6.50 16 24 O -0.50 -8.85 17.08 -18.75 -0.32 -9.17 16 25 O -0.52 -5.14 13.23 -39.24 -0.52 -5.66 16 26 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.60 7.99 -51.93 -0.42 0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.40 4.27 8.62 -40.82 -0.35 3.92 16 32 H 0.41 6.65 8.72 -40.82 -0.36 6.29 16 33 H 0.13 3.41 6.25 -52.48 -0.33 3.08 16 34 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 35 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 37 H 0.41 2.48 9.10 45.56 0.41 2.89 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -35.62 327.01 -7.68 -43.31 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -3.49 Total: 14.86 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -3.49 Total: 9.06 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.16 Total: -57.86 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.76 Total: -27.52 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.62 -7.68 -43.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573931340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.379 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds