Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47317 * 2 1 4 4 H 1.08998 * 109.46965 * 305.00185 * 3 2 1 5 5 N 1.46502 * 109.47052 * 65.00367 * 3 2 1 6 6 C 1.34777 * 119.99785 * 204.99938 * 5 3 2 7 7 O 1.21584 * 119.99863 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99721 * 179.97438 * 6 5 3 9 9 C 1.39458 * 119.99442 * 175.06043 * 8 6 5 10 10 C 1.38643 * 119.64375 * 174.22454 * 9 8 6 11 11 C 1.40821 * 118.67573 * 179.72371 * 10 9 8 12 12 C 1.41543 * 121.00136 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00434 * 147.46924 * 12 11 10 14 14 C 1.40032 * 119.99782 * 327.46850 * 12 11 10 15 15 N 1.30749 * 119.99828 * 359.81695 * 14 12 11 16 16 Si 1.86803 * 120.00143 * 179.82043 * 14 12 11 17 17 H 1.48502 * 109.47090 * 89.99962 * 16 14 12 18 18 H 1.48497 * 109.46912 * 210.00087 * 16 14 12 19 19 H 1.48492 * 109.46935 * 329.99864 * 16 14 12 20 20 C 1.41160 * 118.00267 * 359.97438 * 11 10 9 21 21 C 1.36594 * 119.13059 * 0.02562 * 20 11 10 22 22 N 1.32061 * 121.25622 * 359.97438 * 21 20 11 23 23 C 1.50701 * 109.46925 * 185.00176 * 3 2 1 24 24 O 1.20829 * 119.99563 * 239.99757 * 23 3 2 25 25 O 1.34223 * 120.00076 * 60.00188 * 23 3 2 26 26 H 1.08999 * 109.46841 * 300.00180 * 1 2 3 27 27 H 1.08998 * 109.46707 * 59.99464 * 1 2 3 28 28 H 1.08993 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47016 * 240.00296 * 2 1 3 30 30 H 1.08998 * 109.47437 * 120.00391 * 2 1 3 31 31 H 0.97002 * 119.99684 * 24.99357 * 5 3 2 32 32 H 0.96998 * 119.99877 * 355.06779 * 8 6 5 33 33 H 1.08004 * 120.66276 * 359.74179 * 10 9 8 34 34 H 0.97004 * 119.99404 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.43546 * 179.97438 * 20 11 10 36 36 H 1.08000 * 119.36854 * 179.97438 * 21 20 11 37 37 H 0.96701 * 116.99895 * 179.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6526 2.0975 1.2519 6 6 1.5258 3.4384 1.2996 7 8 1.7326 4.1044 0.3037 8 7 1.1689 4.0409 2.4512 9 6 1.1377 5.4330 2.5292 10 6 0.6553 6.0449 3.6759 11 6 0.6385 7.4518 3.7351 12 6 0.1561 8.1275 4.8814 13 1 0.5856 9.0755 5.1702 14 6 -0.8781 7.5670 5.6411 15 7 -1.4004 6.4211 5.2895 16 14 -1.5114 8.4563 7.1569 17 1 -2.6220 9.3634 6.7706 18 1 -2.0045 7.4624 8.1439 19 1 -0.4113 9.2499 7.7609 20 6 1.1173 8.1679 2.6168 21 6 1.5737 7.4771 1.5304 22 7 1.5749 6.1566 1.5091 23 6 3.5420 1.4442 -0.1239 24 8 4.2192 1.9416 0.7445 25 8 4.1274 0.8933 -1.1988 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.4872 1.5660 2.0463 32 1 0.9338 3.5063 3.2256 33 1 0.2997 5.4544 4.5074 34 1 -2.1166 6.0326 5.8160 35 1 1.1220 9.2479 2.6199 36 1 1.9405 8.0211 0.6726 37 1 5.0934 0.9188 -1.2339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573931340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = -108.406614 kcal Electronic energy + Delta-G solvation = -23069.950021 eV Core-core repulsion = 19425.408280 eV Total energy + Delta-G solvation = -3644.541741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89575 -41.01919 -39.78853 -37.29258 -36.90297 -36.02668 -35.51052 -33.26966 -32.38064 -30.43374 -28.61566 -27.88166 -24.10652 -23.77547 -23.50902 -22.07213 -21.70611 -19.75395 -19.47554 -19.10725 -18.09637 -17.67605 -17.14660 -16.70485 -16.33448 -16.17153 -16.05532 -15.87999 -15.16848 -14.92013 -14.63219 -14.54102 -14.33675 -14.23865 -13.57053 -13.18596 -13.01424 -12.83794 -12.68665 -12.61746 -12.19018 -12.13951 -11.89923 -11.85833 -11.76218 -11.50281 -11.36965 -11.19261 -10.36862 -9.83298 -9.68074 -8.85238 -8.54026 -6.58112 0.79998 1.01589 1.14854 1.37190 1.42725 1.55806 1.57309 1.98603 2.23008 2.39823 2.87443 3.09234 3.61991 3.73473 3.96816 4.13228 4.16290 4.42921 4.59005 4.69552 4.82082 4.83215 4.91294 5.06880 5.10191 5.10646 5.27042 5.30979 5.43793 5.48319 5.57642 5.63759 5.77821 5.99835 6.25852 6.56053 6.79090 6.84885 6.90591 6.94508 7.52846 7.85264 8.35193 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.003597 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.708743 B = 7781.692146 C = 8436.579136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.175 3.825 4 H 0.117 0.883 5 N -0.711 5.711 6 C 0.697 3.303 7 O -0.577 6.577 8 N -0.658 5.658 9 C 0.349 3.651 10 C -0.249 4.249 11 C 0.115 3.885 12 C -0.488 4.488 13 H 0.083 0.917 14 C 0.035 3.965 15 N -0.826 5.826 16 Si 0.992 3.008 17 H -0.265 1.265 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.288 4.288 21 C 0.109 3.891 22 N -0.575 5.575 23 C 0.466 3.534 24 O -0.548 6.548 25 O -0.504 6.504 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.416 0.584 32 H 0.421 0.579 33 H 0.131 0.869 34 H 0.289 0.711 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -15.666 -5.050 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C 0.067 3.933 4 H 0.135 0.865 5 N -0.370 5.370 6 C 0.397 3.603 7 O -0.452 6.452 8 N -0.307 5.307 9 C 0.121 3.879 10 C -0.275 4.275 11 C 0.106 3.894 12 C -0.519 4.519 13 H 0.101 0.899 14 C -0.180 4.180 15 N -0.453 5.453 16 Si 0.813 3.187 17 H -0.190 1.190 18 H -0.189 1.189 19 H -0.182 1.182 20 C -0.312 4.312 21 C -0.044 4.044 22 N -0.295 5.295 23 C 0.307 3.693 24 O -0.438 6.438 25 O -0.317 6.317 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.108 0.892 31 H 0.253 0.747 32 H 0.259 0.741 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 1.997 -15.630 -6.441 17.023 hybrid contribution 0.035 0.683 1.976 2.091 sum 2.032 -14.947 -4.465 15.732 Atomic orbital electron populations 1.21782 0.93548 1.03280 1.02290 1.21797 0.97764 0.89388 1.05840 1.20552 0.85833 0.98280 0.88670 0.86526 1.44698 1.73738 1.04143 1.14388 1.16183 0.77981 0.82598 0.83528 1.90967 1.55599 1.63986 1.34621 1.42356 1.69971 1.04233 1.14097 1.18195 0.94974 0.83310 0.91383 1.21668 1.11388 0.95912 0.98490 1.18030 0.87195 0.91634 0.92509 1.19829 1.17153 1.06477 1.08488 0.89895 1.26796 0.95318 0.95174 1.00717 1.69773 1.21174 1.16821 1.37527 0.85044 0.78883 0.78533 0.76264 1.19024 1.18947 1.18242 1.21953 1.13229 1.00129 0.95870 1.21929 0.96051 0.89088 0.97309 1.67275 1.25045 1.07963 1.29182 1.24526 0.93414 0.72861 0.78485 1.90741 1.66607 1.43624 1.42843 1.84460 1.30401 1.73376 1.43449 0.92929 0.92717 0.89885 0.86994 0.89217 0.74680 0.74147 0.85166 0.90005 0.86358 0.83434 0.71245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.80 71.98 0.71 -1.19 16 2 C -0.11 -1.39 5.44 30.60 0.17 -1.22 16 3 C 0.17 3.98 2.48 44.25 0.11 4.09 16 4 H 0.12 2.99 7.58 -2.39 -0.02 2.98 16 5 N -0.71 -19.23 4.07 -461.40 -1.88 -21.11 16 6 C 0.70 27.71 8.34 179.05 1.49 29.20 16 7 O -0.58 -28.28 14.30 -3.98 -0.06 -28.34 16 8 N -0.66 -26.94 5.40 -322.36 -1.74 -28.68 16 9 C 0.35 17.74 7.40 132.76 0.98 18.72 16 10 C -0.25 -13.10 8.60 23.00 0.20 -12.90 16 11 C 0.11 6.24 5.57 -21.11 -0.12 6.12 16 12 C -0.49 -25.62 9.12 23.52 0.21 -25.40 16 13 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 14 C 0.03 1.68 5.41 85.29 0.46 2.15 16 15 N -0.83 -41.01 10.69 21.84 0.23 -40.77 16 16 Si 0.99 36.62 29.56 68.60 2.03 38.65 16 17 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 18 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 20 C -0.29 -14.60 9.85 22.60 0.22 -14.38 16 21 C 0.11 5.47 11.10 84.27 0.94 6.41 16 22 N -0.58 -30.90 7.90 -194.27 -1.53 -32.43 16 23 C 0.47 12.09 7.66 71.24 0.55 12.63 16 24 O -0.55 -19.33 17.08 21.96 0.37 -18.95 16 25 O -0.50 -8.97 13.23 -51.34 -0.68 -9.65 16 26 H 0.05 0.76 7.75 -2.39 -0.02 0.74 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.11 1.06 7.99 -2.39 -0.02 1.04 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.42 8.34 8.62 -92.71 -0.80 7.54 16 32 H 0.42 13.85 8.72 -92.71 -0.81 13.04 16 33 H 0.13 6.80 6.25 -2.91 -0.02 6.78 16 34 H 0.29 12.88 8.29 -92.71 -0.77 12.11 16 35 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 36 H 0.15 6.38 8.06 -2.91 -0.02 6.35 16 37 H 0.43 4.32 9.10 -74.06 -0.67 3.65 16 Total: -1.00 -78.50 327.01 1.54 -76.97 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -1.13 Total: 40.08 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 5.92 Total: 24.23 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -4.92 Total: -122.99 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.36 Total: -56.93 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -78.50 1.54 -76.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573931340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.441 kcal (2) G-P(sol) polarization free energy of solvation -78.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds