Wall clock time and date at job start Tue Mar 31 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99703 * 2 1 4 4 N 1.46906 * 109.47003 * 121.73601 * 3 2 1 5 5 C 1.46902 * 110.99945 * 199.42559 * 4 3 2 6 6 C 1.50699 * 109.46768 * 75.69035 * 5 4 3 7 7 H 1.07997 * 120.00713 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99652 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99954 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00193 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46797 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47184 * 119.99961 * 10 8 6 13 13 H 1.48500 * 109.46731 * 240.00296 * 10 8 6 14 14 C 1.46895 * 110.99982 * 75.47155 * 4 3 2 15 15 H 1.09003 * 109.47351 * 314.36658 * 14 4 3 16 16 C 1.50700 * 109.47547 * 74.36769 * 14 4 3 17 17 O 1.20826 * 119.99570 * 346.82947 * 16 14 4 18 18 O 1.34222 * 120.00128 * 166.82755 * 16 14 4 19 19 C 1.50704 * 109.47243 * 194.36947 * 14 4 3 20 20 C 1.38247 * 119.96785 * 358.50875 * 19 14 4 21 21 C 1.38207 * 120.01994 * 179.76665 * 20 19 14 22 22 C 1.38460 * 119.97602 * 0.51344 * 21 20 19 23 23 F 1.35091 * 120.02766 * 179.76786 * 22 21 20 24 24 C 1.38464 * 119.94775 * 359.73727 * 22 21 20 25 25 C 1.38204 * 119.97283 * 0.02562 * 24 22 21 26 26 H 1.08008 * 119.99940 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00385 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00385 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47296 * 1.73483 * 3 2 1 30 30 H 1.09001 * 109.47250 * 241.73370 * 3 2 1 31 31 H 1.08999 * 109.46559 * 195.69218 * 5 4 3 32 32 H 1.08998 * 109.47119 * 315.69275 * 5 4 3 33 33 H 0.96998 * 120.00382 * 179.97438 * 9 8 6 34 34 H 0.96699 * 117.00363 * 179.97438 * 18 16 14 35 35 H 1.08001 * 119.99049 * 0.02562 * 20 19 14 36 36 H 1.07998 * 120.01177 * 180.25146 * 21 20 19 37 37 H 1.07994 * 120.01345 * 179.97438 * 24 22 21 38 38 H 1.07995 * 119.98310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9391 1.3650 1.1780 5 6 3.3303 2.7498 1.4734 6 6 2.1730 3.4731 2.1126 7 1 1.2401 2.9560 2.2821 8 6 2.3052 4.7952 2.4811 9 7 3.4410 5.4250 2.2743 10 14 0.8705 5.6921 3.2728 11 1 -0.2852 4.7675 3.3937 12 1 1.2676 6.1664 4.6228 13 1 0.4890 6.8550 2.4318 14 6 4.1208 0.5109 0.9993 15 1 3.8132 -0.4568 0.6029 16 6 5.0748 1.1682 0.0355 17 8 4.7084 2.1066 -0.6316 18 8 6.3314 0.7113 -0.0818 19 6 4.8046 0.3150 2.3279 20 6 4.3059 0.9338 3.4591 21 6 4.9294 0.7511 4.6790 22 6 6.0599 -0.0436 4.7659 23 9 6.6728 -0.2191 5.9569 24 6 6.5614 -0.6586 3.6313 25 6 5.9335 -0.4784 2.4134 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3555 2.1333 0.0311 30 1 2.6665 1.3765 -0.9051 31 1 4.1803 2.7495 2.1557 32 1 3.6075 3.2544 0.5478 33 1 3.5340 6.3552 2.5332 34 1 6.9064 1.1649 -0.7132 35 1 3.4265 1.5569 3.3903 36 1 4.5373 1.2313 5.5633 37 1 7.4434 -1.2783 3.6979 38 1 6.3242 -0.9584 1.5285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:04 Heat of formation + Delta-G solvation = -69.056197 kcal Electronic energy + Delta-G solvation = -24044.377169 eV Core-core repulsion = 20381.621829 eV Total energy + Delta-G solvation = -3662.755340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.63759 -40.58579 -38.57066 -37.01516 -35.44252 -33.39715 -32.68851 -30.98045 -30.44002 -27.80256 -26.35442 -24.43362 -22.62219 -22.20158 -21.60723 -20.14710 -19.13704 -17.88239 -17.26982 -16.77952 -16.47647 -15.83968 -15.66573 -15.30706 -14.89121 -14.86485 -14.40158 -14.06786 -13.80325 -13.47967 -13.19786 -12.84235 -12.71464 -12.35038 -12.23951 -11.92796 -11.68658 -11.44100 -11.01257 -10.94993 -10.80153 -10.75460 -10.52674 -10.42125 -10.09641 -9.96968 -9.37167 -8.99350 -8.70699 -8.48405 -8.19673 -7.51408 -6.05877 -4.08436 1.38731 1.63020 2.55044 2.67560 3.28630 3.36252 3.37302 3.40769 4.00378 4.35507 4.55530 4.64011 4.94112 5.12275 5.19326 5.28057 5.30767 5.43651 5.57018 5.67004 5.72725 5.83243 6.04627 6.20151 6.24857 6.32795 6.43114 6.49361 6.72878 6.78354 6.93522 6.97367 7.05614 7.20537 7.27293 7.44305 7.69098 7.86954 8.05068 8.19548 8.42305 9.00467 9.55494 11.04016 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.010856 B = 0.006801 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.509009 B = 4116.122895 C = 5254.206032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 C 0.075 3.925 4 N -0.496 5.496 5 C 0.166 3.834 6 C -0.511 4.511 7 H 0.066 0.934 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.135 3.865 15 H 0.118 0.882 16 C 0.447 3.553 17 O -0.493 6.493 18 O -0.523 6.523 19 C -0.095 4.095 20 C -0.046 4.046 21 C -0.162 4.162 22 C 0.094 3.906 23 F -0.148 7.148 24 C -0.170 4.170 25 C -0.072 4.072 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.398 0.602 35 H 0.172 0.828 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -12.851 -1.945 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.157 4.157 3 C -0.052 4.052 4 N -0.219 5.219 5 C 0.042 3.958 6 C -0.550 4.550 7 H 0.084 0.916 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.024 3.976 15 H 0.136 0.864 16 C 0.287 3.713 17 O -0.379 6.379 18 O -0.334 6.334 19 C -0.096 4.096 20 C -0.064 4.064 21 C -0.181 4.181 22 C 0.075 3.925 23 F -0.126 7.126 24 C -0.189 4.189 25 C -0.090 4.090 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.256 0.744 35 H 0.190 0.810 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.097 -12.760 -1.377 13.203 hybrid contribution 0.372 1.248 -0.401 1.362 sum 3.469 -11.513 -1.778 12.155 Atomic orbital electron populations 1.23728 0.95925 1.01353 1.02098 1.22967 0.96047 0.98183 0.98538 1.21335 0.96340 0.95688 0.91864 1.62774 1.10613 1.14253 1.34280 1.20366 0.97201 0.80737 0.97486 1.21134 0.98923 0.95351 1.39565 0.91625 1.24972 0.95861 0.97460 0.96053 1.69980 1.24526 1.11116 1.47441 0.86488 0.82595 0.79688 0.78960 1.19561 1.21042 1.21128 1.20556 0.88208 0.98913 0.89958 0.86441 1.25276 0.81457 0.82301 0.82311 1.90745 1.76942 1.26540 1.43693 1.84610 1.24889 1.61331 1.62549 1.19466 0.96353 0.99601 0.94154 1.21711 0.99992 0.94928 0.89776 1.21238 0.96054 1.00838 0.99960 1.17845 0.93914 0.99956 0.80808 1.91453 1.82379 1.94165 1.44637 1.20915 1.02348 1.03740 0.91861 1.20838 0.94056 0.97146 0.96964 0.89175 0.88464 0.88392 0.88770 0.93178 0.94648 0.95099 0.92935 0.74358 0.81043 0.84885 0.85296 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 29.02 0.42 -2.27 16 2 C -0.14 -2.08 9.32 -36.02 -0.34 -2.41 16 3 C 0.07 1.38 4.94 -4.97 -0.02 1.35 16 4 N -0.50 -9.76 3.47 -232.31 -0.81 -10.57 16 5 C 0.17 4.06 2.46 -4.98 -0.01 4.05 16 6 C -0.51 -13.55 8.04 -34.44 -0.28 -13.82 16 7 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 10 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.14 2.26 2.46 -70.02 -0.17 2.09 16 15 H 0.12 1.64 6.87 -51.93 -0.36 1.28 16 16 C 0.45 7.72 6.97 36.01 0.25 7.97 16 17 O -0.49 -10.33 12.86 -18.75 -0.24 -10.57 16 18 O -0.52 -6.95 11.16 -39.24 -0.44 -7.38 16 19 C -0.09 -1.57 4.98 -104.62 -0.52 -2.09 16 20 C -0.05 -0.84 7.81 -39.59 -0.31 -1.15 16 21 C -0.16 -2.70 10.03 -39.51 -0.40 -3.09 16 22 C 0.09 1.46 7.30 -39.42 -0.29 1.17 16 23 F -0.15 -2.28 17.27 2.25 0.04 -2.24 16 24 C -0.17 -2.35 10.03 -39.51 -0.40 -2.74 16 25 C -0.07 -1.00 8.68 -39.59 -0.34 -1.35 16 26 H 0.09 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.10 1.40 7.83 -52.49 -0.41 0.99 16 28 H 0.10 1.28 7.29 -52.49 -0.38 0.90 16 29 H 0.09 1.93 6.94 -51.93 -0.36 1.57 16 30 H 0.05 0.95 6.20 -51.93 -0.32 0.62 16 31 H 0.04 0.93 5.64 -51.93 -0.29 0.63 16 32 H 0.03 0.87 5.79 -51.93 -0.30 0.57 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.40 3.80 9.10 45.56 0.41 4.22 16 35 H 0.17 3.58 5.18 -52.49 -0.27 3.31 16 36 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.14 1.60 6.97 -52.49 -0.37 1.23 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -30.68 319.82 -6.88 -37.56 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.46 Total: 8.33 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.51 Total: -10.79 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.07 Total: -35.81 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.68 Total: -17.96 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.68 -6.88 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.501 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds