Wall clock time and date at job start Tue Mar 31 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99703 * 2 1 4 4 N 1.46906 * 109.47003 * 121.73601 * 3 2 1 5 5 C 1.46902 * 110.99945 * 199.42559 * 4 3 2 6 6 C 1.50699 * 109.46768 * 75.69035 * 5 4 3 7 7 H 1.07997 * 120.00713 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99652 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99954 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00193 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46797 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47184 * 119.99961 * 10 8 6 13 13 H 1.48500 * 109.46731 * 240.00296 * 10 8 6 14 14 C 1.46895 * 110.99982 * 75.47155 * 4 3 2 15 15 H 1.09003 * 109.47351 * 314.36658 * 14 4 3 16 16 C 1.50700 * 109.47547 * 74.36769 * 14 4 3 17 17 O 1.20826 * 119.99570 * 346.82947 * 16 14 4 18 18 O 1.34222 * 120.00128 * 166.82755 * 16 14 4 19 19 C 1.50704 * 109.47243 * 194.36947 * 14 4 3 20 20 C 1.38247 * 119.96785 * 358.50875 * 19 14 4 21 21 C 1.38207 * 120.01994 * 179.76665 * 20 19 14 22 22 C 1.38460 * 119.97602 * 0.51344 * 21 20 19 23 23 F 1.35091 * 120.02766 * 179.76786 * 22 21 20 24 24 C 1.38464 * 119.94775 * 359.73727 * 22 21 20 25 25 C 1.38204 * 119.97283 * 0.02562 * 24 22 21 26 26 H 1.08008 * 119.99940 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00385 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00385 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47296 * 1.73483 * 3 2 1 30 30 H 1.09001 * 109.47250 * 241.73370 * 3 2 1 31 31 H 1.08999 * 109.46559 * 195.69218 * 5 4 3 32 32 H 1.08998 * 109.47119 * 315.69275 * 5 4 3 33 33 H 0.96998 * 120.00382 * 179.97438 * 9 8 6 34 34 H 0.96699 * 117.00363 * 179.97438 * 18 16 14 35 35 H 1.08001 * 119.99049 * 0.02562 * 20 19 14 36 36 H 1.07998 * 120.01177 * 180.25146 * 21 20 19 37 37 H 1.07994 * 120.01345 * 179.97438 * 24 22 21 38 38 H 1.07995 * 119.98310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9391 1.3650 1.1780 5 6 3.3303 2.7498 1.4734 6 6 2.1730 3.4731 2.1126 7 1 1.2401 2.9560 2.2821 8 6 2.3052 4.7952 2.4811 9 7 3.4410 5.4250 2.2743 10 14 0.8705 5.6921 3.2728 11 1 -0.2852 4.7675 3.3937 12 1 1.2676 6.1664 4.6228 13 1 0.4890 6.8550 2.4318 14 6 4.1208 0.5109 0.9993 15 1 3.8132 -0.4568 0.6029 16 6 5.0748 1.1682 0.0355 17 8 4.7084 2.1066 -0.6316 18 8 6.3314 0.7113 -0.0818 19 6 4.8046 0.3150 2.3279 20 6 4.3059 0.9338 3.4591 21 6 4.9294 0.7511 4.6790 22 6 6.0599 -0.0436 4.7659 23 9 6.6728 -0.2191 5.9569 24 6 6.5614 -0.6586 3.6313 25 6 5.9335 -0.4784 2.4134 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3555 2.1333 0.0311 30 1 2.6665 1.3765 -0.9051 31 1 4.1803 2.7495 2.1557 32 1 3.6075 3.2544 0.5478 33 1 3.5340 6.3552 2.5332 34 1 6.9064 1.1649 -0.7132 35 1 3.4265 1.5569 3.3903 36 1 4.5373 1.2313 5.5633 37 1 7.4434 -1.2783 3.6979 38 1 6.3242 -0.9584 1.5285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:04 Heat of formation + Delta-G solvation = -88.513934 kcal Electronic energy + Delta-G solvation = -24045.220920 eV Core-core repulsion = 20381.621829 eV Total energy + Delta-G solvation = -3663.599091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.85225 -41.97210 -39.84971 -38.40023 -36.80314 -35.00735 -34.35790 -32.34761 -31.73812 -29.53139 -27.77408 -26.12777 -24.03347 -23.51826 -23.09580 -21.51458 -20.40518 -19.21329 -18.62817 -18.51877 -17.79758 -17.30600 -17.11384 -16.56008 -16.49475 -16.10787 -16.03897 -15.52300 -15.14426 -14.86157 -14.46892 -14.18942 -14.05341 -13.98742 -13.77328 -13.36874 -13.09382 -12.90574 -12.68898 -12.58679 -12.40461 -12.20639 -12.04916 -11.90840 -11.67290 -11.58273 -11.27898 -10.58764 -10.24443 -9.91655 -9.47531 -9.13887 -8.17530 -6.26387 0.14520 0.41285 1.20291 1.39269 1.40506 1.49204 1.53379 2.12907 2.39712 2.77141 3.13132 3.17596 3.34282 3.63192 3.90395 4.04824 4.05942 4.17780 4.36563 4.43555 4.52736 4.60807 4.63791 4.94315 5.03869 5.07392 5.12321 5.21522 5.24665 5.37740 5.47034 5.62416 5.68224 5.72122 5.78458 6.00239 6.03326 6.07543 6.20087 6.44940 6.89491 7.03874 7.41768 8.92703 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.010856 B = 0.006801 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.509009 B = 4116.122895 C = 5254.206032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.079 3.921 4 N -0.498 5.498 5 C 0.192 3.808 6 C -0.515 4.515 7 H 0.063 0.937 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.133 3.867 15 H 0.154 0.846 16 C 0.453 3.547 17 O -0.538 6.538 18 O -0.504 6.504 19 C -0.103 4.103 20 C -0.070 4.070 21 C -0.173 4.173 22 C 0.087 3.913 23 F -0.147 7.147 24 C -0.155 4.155 25 C -0.059 4.059 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.015 0.985 32 H -0.009 1.009 33 H 0.261 0.739 34 H 0.419 0.581 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.165 0.835 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.052 -15.486 -1.963 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.167 4.167 3 C -0.048 4.048 4 N -0.220 5.220 5 C 0.067 3.933 6 C -0.553 4.553 7 H 0.081 0.919 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.206 1.206 13 H -0.209 1.209 14 C 0.021 3.979 15 H 0.171 0.829 16 C 0.294 3.706 17 O -0.428 6.428 18 O -0.316 6.316 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.192 4.192 22 C 0.068 3.932 23 F -0.126 7.126 24 C -0.174 4.174 25 C -0.077 4.077 26 H 0.140 0.860 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.280 0.720 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.182 0.818 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.545 -15.432 -1.399 15.895 hybrid contribution 0.311 1.986 -0.419 2.054 sum 3.856 -13.446 -1.818 14.105 Atomic orbital electron populations 1.23942 0.95662 1.02318 0.99973 1.22882 0.96342 0.97160 1.00358 1.21240 0.95646 0.96902 0.91006 1.62627 1.12406 1.11703 1.35302 1.19811 0.95648 0.83145 0.94685 1.21447 0.99382 0.95709 1.38809 0.91901 1.25812 0.98338 0.98447 0.96754 1.70111 1.26652 1.11389 1.49071 0.85464 0.79650 0.78387 0.77939 1.18506 1.20593 1.20940 1.20693 0.87300 0.99392 0.90470 0.82890 1.25205 0.82490 0.81375 0.81505 1.90754 1.77990 1.28462 1.45546 1.84510 1.23405 1.60810 1.62878 1.19530 0.97419 1.00251 0.93172 1.21415 0.99952 0.96130 0.91342 1.21244 0.96892 1.01578 0.99518 1.17944 0.93630 1.00074 0.81529 1.91455 1.82217 1.94139 1.44772 1.21299 1.02709 1.02622 0.90729 1.21099 0.92541 0.95887 0.98206 0.85962 0.89719 0.85516 0.92055 0.94051 0.96676 0.99097 0.93002 0.71999 0.84546 0.84987 0.81768 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.70 14.32 67.79 0.97 -3.73 16 2 C -0.15 -4.24 9.32 25.65 0.24 -4.00 16 3 C 0.08 2.99 4.94 85.56 0.42 3.41 16 4 N -0.50 -20.06 3.47 -888.89 -3.08 -23.15 16 5 C 0.19 9.91 2.46 85.56 0.21 10.12 16 6 C -0.51 -28.54 8.04 25.60 0.21 -28.33 16 7 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 10 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 14 C 0.13 4.29 2.46 43.43 0.11 4.40 16 15 H 0.15 3.82 6.87 -2.39 -0.02 3.80 16 16 C 0.45 15.30 6.97 71.24 0.50 15.79 16 17 O -0.54 -23.13 12.86 21.97 0.28 -22.85 16 18 O -0.50 -12.04 11.16 -51.34 -0.57 -12.61 16 19 C -0.10 -3.27 4.98 -19.86 -0.10 -3.37 16 20 C -0.07 -2.60 7.81 22.26 0.17 -2.43 16 21 C -0.17 -5.81 10.03 22.32 0.22 -5.59 16 22 C 0.09 2.56 7.30 22.38 0.16 2.73 16 23 F -0.15 -4.28 17.27 44.97 0.78 -3.50 16 24 C -0.16 -3.73 10.03 22.32 0.22 -3.50 16 25 C -0.06 -1.46 8.68 22.26 0.19 -1.26 16 26 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.08 2.40 7.83 -2.91 -0.02 2.38 16 28 H 0.13 2.88 7.29 -2.91 -0.02 2.86 16 29 H 0.06 2.66 6.94 -2.39 -0.02 2.64 16 30 H 0.04 1.61 6.20 -2.39 -0.01 1.60 16 31 H 0.02 0.84 5.64 -2.39 -0.01 0.83 16 32 H -0.01 -0.52 5.79 -2.39 -0.01 -0.53 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.42 6.89 9.10 -74.06 -0.67 6.22 16 35 H 0.14 6.04 5.18 -2.91 -0.02 6.02 16 36 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.17 3.06 6.97 -2.91 -0.02 3.04 16 Total: -1.00 -70.20 319.82 4.14 -66.06 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.43 Total: 20.79 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 3.99 Total: -15.05 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.80 Total: -79.38 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.29 Total: -35.46 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.20 4.14 -66.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.456 kcal (2) G-P(sol) polarization free energy of solvation -70.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds