Wall clock time and date at job start Tue Mar 31 2020 06:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47411 * 89.99586 * 10 8 6 12 12 H 1.48497 * 109.47183 * 209.99666 * 10 8 6 13 13 H 1.48503 * 109.46948 * 330.00085 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 4 18 18 C 1.34227 * 125.74271 * 125.00123 * 17 16 14 19 19 C 1.38122 * 107.41043 * 179.97438 * 18 17 16 20 20 C 1.47288 * 126.42760 * 179.97438 * 19 18 17 21 21 O 1.21526 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.34755 * 120.00203 * 179.97438 * 20 19 18 23 23 C 1.41340 * 107.14572 * 359.97438 * 19 18 17 24 24 N 1.30431 * 108.01164 * 359.74720 * 23 19 18 25 25 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 29 29 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 30 30 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 31 31 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 32 32 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 35 35 H 1.08001 * 126.29201 * 359.95151 * 18 17 16 36 36 H 0.96695 * 117.00368 * 180.02562 * 22 20 19 37 37 H 1.08001 * 125.99639 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 1.6988 6.6496 3.1597 12 1 3.1354 6.3009 5.0820 13 1 4.0617 6.2062 2.8428 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 7 6.0918 -0.1200 -0.2520 18 6 6.5520 -1.3435 -0.5567 19 6 7.9143 -1.3412 -0.3289 20 6 8.8362 -2.4726 -0.5273 21 8 8.4124 -3.5384 -0.9292 22 8 10.1495 -2.3260 -0.2634 23 6 8.2578 -0.0493 0.1304 24 7 7.1693 0.6684 0.1666 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4889 1.6967 2.5459 31 1 3.0991 1.3604 3.2259 32 1 1.7288 3.9749 5.4286 33 1 4.0680 -0.5285 -0.6228 34 1 4.6125 1.0952 -1.1083 35 1 5.9649 -2.1767 -0.9139 36 1 10.7153 -3.0965 -0.4093 37 1 9.2485 0.2861 0.3995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:02 Heat of formation + Delta-G solvation = -16.923211 kcal Electronic energy + Delta-G solvation = -22794.060666 eV Core-core repulsion = 19153.485944 eV Total energy + Delta-G solvation = -3640.574723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49439 -39.75044 -39.07662 -36.04323 -35.85960 -33.63631 -33.13758 -32.17555 -30.50818 -28.83109 -27.05878 -25.55393 -23.96213 -22.91354 -21.30244 -20.49602 -20.12847 -18.87607 -17.98233 -17.46541 -16.91181 -16.51893 -16.05714 -15.64227 -15.44132 -14.96966 -14.61912 -14.48355 -14.32978 -13.82059 -13.53998 -13.23234 -12.91289 -12.63161 -12.56495 -12.00730 -11.84849 -11.60937 -11.37431 -11.22221 -11.14399 -10.95385 -10.66596 -10.35119 -10.24172 -9.86631 -9.71637 -9.34666 -9.14174 -8.76425 -8.48558 -7.86616 -6.09758 -4.14883 1.26652 2.06257 2.20712 2.31374 3.07394 3.15661 3.20560 3.27297 3.34838 3.39752 3.71765 4.38531 4.49464 4.56696 4.72378 4.88348 4.98624 5.10194 5.13696 5.23096 5.26123 5.35002 5.46682 5.76121 5.87539 6.02682 6.39308 6.42890 6.59425 6.63974 6.76028 6.94262 7.32111 7.39955 7.55257 7.85686 7.92274 8.14505 8.17957 8.74714 8.91679 9.50470 10.98473 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003923 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.751196 B = 7136.571131 C = 8396.130430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.176 4.176 3 C 0.132 3.868 4 N -0.589 5.589 5 C 0.250 3.750 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.493 3.507 15 O -0.507 6.507 16 C 0.104 3.896 17 N -0.336 5.336 18 C 0.138 3.862 19 C -0.291 4.291 20 C 0.567 3.433 21 O -0.536 6.536 22 O -0.513 6.513 23 C 0.092 3.908 24 N -0.256 5.256 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.190 0.810 36 H 0.411 0.589 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -10.088 -14.094 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.008 3.992 4 N -0.322 5.322 5 C 0.131 3.869 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.277 3.723 15 O -0.381 6.381 16 C -0.020 4.020 17 N -0.112 5.112 18 C -0.014 4.014 19 C -0.305 4.305 20 C 0.413 3.587 21 O -0.427 6.427 22 O -0.324 6.324 23 C -0.098 4.098 24 N -0.074 5.074 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.207 0.793 36 H 0.269 0.731 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.624 -8.723 -13.136 16.433 hybrid contribution 0.680 -0.365 -0.138 0.784 sum 5.305 -9.089 -13.274 16.940 Atomic orbital electron populations 1.23861 0.95839 1.01976 0.99554 1.23392 0.96557 0.98735 1.00837 1.20665 0.93386 0.95821 0.89328 1.48228 1.09800 1.60103 1.14025 1.19317 0.95455 0.93889 0.78212 1.21406 1.40778 0.93154 1.01436 0.92361 1.24925 0.94945 0.98868 0.95255 1.69930 1.41855 1.36247 1.05224 0.86488 0.78638 0.84822 0.77450 1.20620 1.21048 1.19801 1.20025 0.83181 0.80189 0.88952 1.90782 1.51873 1.54748 1.40731 1.21930 0.77047 1.03131 0.99931 1.48103 1.07626 1.08146 1.47365 1.22903 0.94053 0.89160 0.95327 1.19122 0.92330 0.95550 1.23468 1.19665 0.80372 0.86127 0.72560 1.90872 1.78030 1.28756 1.45048 1.84563 1.19928 1.46398 1.81523 1.24227 0.98398 0.90763 0.96382 1.77532 0.92762 1.18328 1.18794 0.88626 0.88119 0.87816 0.88890 0.90884 0.94697 0.93868 0.92649 0.85878 0.86455 0.79306 0.73107 0.78773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 14.32 29.01 0.42 -1.54 16 2 C -0.18 -2.11 9.74 -36.03 -0.35 -2.46 16 3 C 0.13 1.84 5.65 -5.20 -0.03 1.82 16 4 N -0.59 -11.44 2.44 -176.44 -0.43 -11.87 16 5 C 0.25 6.28 5.16 -5.19 -0.03 6.26 16 6 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 10 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.49 9.53 7.70 -10.98 -0.08 9.44 16 15 O -0.51 -12.55 15.29 5.56 0.08 -12.46 16 16 C 0.10 1.35 5.52 -5.19 -0.03 1.33 16 17 N -0.34 -4.91 3.37 -61.97 -0.21 -5.12 16 18 C 0.14 1.71 11.25 -16.55 -0.19 1.53 16 19 C -0.29 -3.85 6.13 -105.08 -0.64 -4.49 16 20 C 0.57 7.00 8.33 34.41 0.29 7.29 16 21 O -0.54 -7.77 17.69 -19.29 -0.34 -8.11 16 22 O -0.51 -4.73 13.28 -40.64 -0.54 -5.27 16 23 C 0.09 1.28 11.87 -16.97 -0.20 1.08 16 24 N -0.26 -4.38 11.56 30.87 0.36 -4.02 16 25 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.10 1.13 7.84 -52.49 -0.41 0.71 16 27 H 0.10 1.10 7.83 -52.49 -0.41 0.69 16 28 H 0.09 1.39 7.72 -51.93 -0.40 0.99 16 29 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 30 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.12 1.07 7.70 -51.93 -0.40 0.67 16 34 H 0.12 1.27 7.40 -51.93 -0.38 0.88 16 35 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.41 1.82 9.11 45.56 0.42 2.24 16 37 H 0.20 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -37.76 338.10 -5.08 -42.84 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.54 Total: 0.83 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.27 Total: 6.95 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.45 Total: -46.53 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.80 Total: -25.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.76 -5.08 -42.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.915 kcal (2) G-P(sol) polarization free energy of solvation -37.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds