Wall clock time and date at job start Tue Mar 31 2020 06:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 N 1.46490 * 109.47314 * 125.00184 * 3 2 1 5 5 C 1.46497 * 120.00322 * 270.00006 * 4 3 2 6 6 C 1.50707 * 109.47162 * 269.99844 * 5 4 3 7 7 H 1.07998 * 119.99576 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47411 * 89.99586 * 10 8 6 12 12 H 1.48497 * 109.47183 * 209.99666 * 10 8 6 13 13 H 1.48503 * 109.46948 * 330.00085 * 10 8 6 14 14 C 1.34780 * 120.00111 * 89.99439 * 4 3 2 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 4 3 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 4 18 18 C 1.34227 * 125.74271 * 125.00123 * 17 16 14 19 19 C 1.38122 * 107.41043 * 179.97438 * 18 17 16 20 20 C 1.47288 * 126.42760 * 179.97438 * 19 18 17 21 21 O 1.21526 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.34755 * 120.00203 * 179.97438 * 20 19 18 23 23 C 1.41340 * 107.14572 * 359.97438 * 19 18 17 24 24 N 1.30431 * 108.01164 * 359.74720 * 23 19 18 25 25 H 1.07993 * 120.00154 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99624 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00094 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47431 * 4.99991 * 3 2 1 29 29 H 1.09002 * 109.47019 * 245.00223 * 3 2 1 30 30 H 1.09000 * 109.47018 * 29.99405 * 5 4 3 31 31 H 1.09000 * 109.47828 * 149.99700 * 5 4 3 32 32 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 4 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 4 35 35 H 1.08001 * 126.29201 * 359.95151 * 18 17 16 36 36 H 0.96695 * 117.00368 * 180.02562 * 22 20 19 37 37 H 1.08001 * 125.99639 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3437 2.4803 7 1 3.3041 3.8369 1.6367 8 6 2.5186 4.0668 3.6081 9 7 1.9584 3.4661 4.6353 10 14 2.8717 5.8998 3.6767 11 1 1.6988 6.6496 3.1597 12 1 3.1354 6.3009 5.0820 13 1 4.0617 6.2062 2.8428 14 6 4.2497 0.8662 0.9823 15 8 5.0201 0.8888 1.9187 16 6 4.6972 0.3183 -0.3484 17 7 6.0918 -0.1200 -0.2520 18 6 6.5520 -1.3435 -0.5567 19 6 7.9143 -1.3412 -0.3289 20 6 8.8362 -2.4726 -0.5273 21 8 8.4124 -3.5384 -0.9292 22 8 10.1495 -2.3260 -0.2634 23 6 8.2578 -0.0493 0.1304 24 7 7.1693 0.6684 0.1666 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4889 1.6967 2.5459 31 1 3.0991 1.3604 3.2259 32 1 1.7288 3.9749 5.4286 33 1 4.0680 -0.5285 -0.6228 34 1 4.6125 1.0952 -1.1083 35 1 5.9649 -2.1767 -0.9139 36 1 10.7153 -3.0965 -0.4093 37 1 9.2485 0.2861 0.3995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:02 Heat of formation + Delta-G solvation = -44.856203 kcal Electronic energy + Delta-G solvation = -22795.271932 eV Core-core repulsion = 19153.485944 eV Total energy + Delta-G solvation = -3641.785988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.52139 -40.83323 -40.38957 -37.28006 -36.90748 -35.23405 -34.46250 -33.68131 -31.53338 -30.36757 -28.50803 -26.88808 -25.22058 -24.46154 -22.48345 -21.44578 -21.16936 -20.13459 -19.00250 -18.69340 -18.40352 -18.14156 -17.30457 -16.83711 -16.56583 -16.27921 -16.12369 -15.62596 -15.58399 -15.08685 -14.54987 -14.34778 -14.30864 -14.04262 -13.83309 -13.41529 -13.30411 -13.00791 -12.85909 -12.59464 -12.46768 -12.26508 -12.23370 -12.16019 -11.69409 -11.36596 -11.11039 -10.65947 -10.47755 -10.29838 -9.84888 -9.52620 -8.24642 -6.38834 0.32088 1.04661 1.21867 1.34665 1.37850 1.38224 1.48113 1.67571 2.22510 2.30668 2.33697 2.42439 3.05823 3.42027 3.61443 3.73459 3.95795 4.04264 4.10811 4.24376 4.28609 4.38038 4.48477 4.86797 4.87436 4.97177 5.08155 5.19975 5.40128 5.47696 5.66075 5.70103 5.73763 5.76197 5.95969 6.03577 6.53142 6.62736 6.72160 7.14046 7.24167 7.38539 8.82570 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003923 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.751196 B = 7136.571131 C = 8396.130430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.185 4.185 3 C 0.127 3.873 4 N -0.593 5.593 5 C 0.268 3.732 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.283 1.283 13 H -0.275 1.275 14 C 0.484 3.516 15 O -0.574 6.574 16 C 0.116 3.884 17 N -0.347 5.347 18 C 0.150 3.850 19 C -0.308 4.308 20 C 0.575 3.425 21 O -0.560 6.560 22 O -0.507 6.507 23 C 0.094 3.906 24 N -0.315 5.315 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.025 0.975 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.228 0.772 36 H 0.432 0.568 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -10.704 -16.443 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.204 4.204 3 C 0.005 3.995 4 N -0.324 5.324 5 C 0.147 3.853 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.789 3.211 11 H -0.186 1.186 12 H -0.208 1.208 13 H -0.199 1.199 14 C 0.271 3.729 15 O -0.453 6.453 16 C -0.008 4.008 17 N -0.124 5.124 18 C -0.002 4.002 19 C -0.322 4.322 20 C 0.422 3.578 21 O -0.454 6.454 22 O -0.320 6.320 23 C -0.095 4.095 24 N -0.133 5.133 25 H 0.134 0.866 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.043 0.957 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.193 0.807 34 H 0.163 0.837 35 H 0.244 0.756 36 H 0.294 0.706 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.545 -9.352 -15.544 18.701 hybrid contribution 0.726 -0.230 0.599 0.969 sum 5.271 -9.581 -14.945 18.519 Atomic orbital electron populations 1.24067 0.95850 1.02782 0.98135 1.23359 0.96748 0.98304 1.01990 1.20974 0.92953 0.96737 0.88839 1.48166 1.11216 1.59604 1.13434 1.18665 0.93896 0.92515 0.80272 1.21711 1.40449 0.94513 1.01417 0.92793 1.25821 0.94692 1.03613 0.94897 1.70048 1.42854 1.38052 1.05824 0.85456 0.78862 0.79365 0.77386 1.18604 1.20822 1.19948 1.21121 0.82096 0.78964 0.90757 1.90747 1.53565 1.57347 1.43637 1.22082 0.77086 1.05823 0.95775 1.48189 1.07589 1.08691 1.47897 1.23535 0.94193 0.88959 0.93476 1.19387 0.93232 0.95589 1.23944 1.19492 0.81048 0.85355 0.71942 1.90863 1.78662 1.29457 1.46372 1.84516 1.18921 1.47761 1.80809 1.24603 0.98621 0.91041 0.95199 1.77450 0.94227 1.20551 1.21105 0.86634 0.88624 0.85811 0.90377 0.86619 0.95732 0.98858 0.92446 0.80689 0.83690 0.75596 0.70598 0.77014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 14.32 67.77 0.97 -2.47 16 2 C -0.19 -3.95 9.74 25.64 0.25 -3.70 16 3 C 0.13 3.31 5.65 85.63 0.48 3.79 16 4 N -0.59 -23.05 2.44 -830.51 -2.03 -25.08 16 5 C 0.27 14.05 5.16 85.64 0.44 14.49 16 6 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.51 5.46 84.65 0.46 0.97 16 9 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 10 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.48 18.61 7.70 87.66 0.67 19.28 16 15 O -0.57 -29.50 15.29 -3.03 -0.05 -29.55 16 16 C 0.12 2.68 5.52 85.63 0.47 3.15 16 17 N -0.35 -9.52 3.37 -349.98 -1.18 -10.70 16 18 C 0.15 3.35 11.25 84.30 0.95 4.29 16 19 C -0.31 -7.65 6.13 -20.16 -0.12 -7.78 16 20 C 0.58 13.13 8.33 70.20 0.58 13.72 16 21 O -0.56 -15.13 17.69 19.75 0.35 -14.78 16 22 O -0.51 -8.32 13.28 -56.66 -0.75 -9.07 16 23 C 0.09 2.58 11.87 85.66 1.02 3.60 16 24 N -0.32 -10.70 11.56 -56.25 -0.65 -11.35 16 25 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 26 H 0.10 2.01 7.84 -2.91 -0.02 1.99 16 27 H 0.12 2.16 7.83 -2.91 -0.02 2.14 16 28 H 0.08 2.27 7.72 -2.38 -0.02 2.26 16 29 H 0.12 2.01 6.44 -2.39 -0.02 1.99 16 30 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 31 H -0.01 -0.42 7.42 -2.39 -0.02 -0.43 16 32 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.18 2.16 7.70 -2.39 -0.02 2.14 16 34 H 0.15 2.57 7.40 -2.39 -0.02 2.56 16 35 H 0.23 3.07 8.06 -2.91 -0.02 3.04 16 36 H 0.43 2.83 9.11 -74.06 -0.67 2.15 16 37 H 0.21 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -87.49 338.10 4.86 -82.63 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.43 Total: 7.95 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.42 Total: 18.73 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -3.57 Total: -102.92 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.45 Total: -53.40 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -87.49 4.86 -82.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.770 kcal (2) G-P(sol) polarization free energy of solvation -87.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds