Wall clock time and date at job start Tue Mar 31 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00193 * 2 1 4 4 N 1.46895 * 109.47036 * 124.17007 * 3 2 1 5 5 C 1.46899 * 111.00227 * 302.15537 * 4 3 2 6 6 C 1.50701 * 109.46822 * 289.88612 * 5 4 3 7 7 H 1.07997 * 120.00311 * 357.30172 * 6 5 4 8 8 C 1.37883 * 119.99748 * 177.29825 * 6 5 4 9 9 N 1.31520 * 119.99587 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47167 * 90.00499 * 10 8 6 12 12 H 1.48503 * 109.47036 * 210.00199 * 10 8 6 13 13 H 1.48499 * 109.47369 * 330.00070 * 10 8 6 14 14 C 1.46901 * 110.99727 * 66.10910 * 4 3 2 15 15 N 1.46509 * 109.46913 * 81.04741 * 14 4 3 16 16 N 1.28391 * 119.09215 * 285.27493 * 15 14 4 17 17 C 1.31455 * 122.25268 * 180.26030 * 16 15 14 18 18 C 1.47758 * 119.89561 * 179.74608 * 17 16 15 19 19 O 1.21476 * 119.99891 * 179.72063 * 18 17 16 20 20 O 1.34719 * 120.00665 * 359.72086 * 18 17 16 21 21 C 1.41621 * 120.20255 * 359.46133 * 17 16 15 22 22 C 1.36311 * 118.23460 * 0.26442 * 21 17 16 23 23 C 1.34601 * 119.09923 * 104.99874 * 15 14 4 24 24 O 1.21976 * 120.22256 * 0.04475 * 23 15 14 25 25 H 1.08000 * 119.99889 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00020 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99889 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46878 * 4.17100 * 3 2 1 29 29 H 1.08996 * 109.47125 * 244.18021 * 3 2 1 30 30 H 1.08992 * 109.47142 * 49.88716 * 5 4 3 31 31 H 1.09003 * 109.46901 * 169.88778 * 5 4 3 32 32 H 0.97000 * 119.99503 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47597 * 321.04606 * 14 4 3 34 34 H 1.09003 * 109.46983 * 201.03675 * 14 4 3 35 35 H 0.96694 * 117.00542 * 180.02562 * 20 18 17 36 36 H 1.07995 * 120.87968 * 180.27558 * 21 17 16 37 37 H 1.07997 * 121.03149 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9820 1.3402 1.1459 5 6 2.2536 1.1688 2.4100 6 6 1.4292 2.3999 2.6854 7 1 1.4783 3.2441 2.0138 8 6 0.6121 2.4483 3.7950 9 7 0.5527 1.4203 4.6132 10 14 -0.4103 3.9739 4.1361 11 1 -1.7335 3.8410 3.4753 12 1 -0.6016 4.1243 5.6011 13 1 0.2913 5.1694 3.6034 14 6 4.0378 0.3285 1.0054 15 7 5.0860 0.8366 0.1167 16 7 4.8644 0.8834 -1.1470 17 6 5.7621 1.3231 -2.0008 18 6 5.4537 1.3490 -3.4456 19 8 6.2799 1.7596 -4.2358 20 8 4.2562 0.9173 -3.8868 21 6 7.0216 1.7775 -1.5395 22 6 7.2699 1.7389 -0.1998 23 6 6.2526 1.2468 0.6481 24 8 6.4306 1.1936 1.8537 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3576 2.1322 0.0747 29 1 2.6329 1.3959 -0.9250 30 1 1.5978 0.3013 2.3367 31 1 2.9652 1.0189 3.2219 32 1 -0.0224 1.4542 5.3936 33 1 3.6141 -0.5828 0.5835 34 1 4.4654 0.1111 1.9842 35 1 4.1007 0.9531 -4.8405 36 1 7.7654 2.1450 -2.2308 37 1 8.2148 2.0747 0.2012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:13 Heat of formation + Delta-G solvation = -15.370533 kcal Electronic energy + Delta-G solvation = -23595.905603 eV Core-core repulsion = 19955.398210 eV Total energy + Delta-G solvation = -3640.507393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16743 -40.20693 -37.77248 -37.53291 -36.35843 -34.54759 -32.88071 -32.08022 -31.41940 -28.02102 -26.99528 -25.49018 -24.62417 -23.39551 -22.33978 -21.17640 -19.32039 -19.18630 -17.79720 -17.60355 -16.80039 -16.67194 -16.42246 -15.75330 -15.61029 -15.24952 -14.58242 -14.32514 -14.12990 -13.81110 -13.73833 -13.28925 -12.99160 -12.67337 -12.25860 -11.91745 -11.79379 -11.71453 -11.35527 -11.08612 -10.98866 -10.94553 -10.79256 -10.56689 -10.53182 -10.04566 -9.82367 -9.38268 -8.78196 -8.66747 -8.46545 -7.60270 -6.07626 -4.08922 0.33850 0.88569 2.02779 2.38507 2.72469 2.83763 3.28917 3.35752 3.38564 3.40750 3.89982 4.36888 4.46222 4.60477 4.82234 4.92998 5.24383 5.28686 5.41639 5.47392 5.58355 5.60532 5.72027 5.77302 5.88752 6.04969 6.16613 6.37345 6.58249 7.00785 7.10671 7.18171 7.32244 7.46416 7.61547 7.67492 7.86612 7.98533 8.02187 8.35973 8.96332 9.54814 11.03032 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.004630 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.820156 B = 6046.094541 C = 6770.818748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.181 4.181 3 C 0.086 3.914 4 N -0.537 5.537 5 C 0.197 3.803 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.260 3.740 15 N -0.311 5.311 16 N -0.123 5.123 17 C -0.006 4.006 18 C 0.567 3.433 19 O -0.511 6.511 20 O -0.493 6.493 21 C -0.035 4.035 22 C -0.190 4.190 23 C 0.483 3.517 24 O -0.506 6.506 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.013 0.987 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.416 0.584 36 H 0.160 0.840 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 -3.335 -15.580 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C -0.042 4.042 4 N -0.261 5.261 5 C 0.073 3.927 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 C 0.050 3.950 15 N -0.136 5.136 16 N 0.041 4.959 17 C -0.173 4.173 18 C 0.408 3.592 19 O -0.397 6.397 20 O -0.303 6.303 21 C -0.057 4.057 22 C -0.219 4.219 23 C 0.281 3.719 24 O -0.382 6.382 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.274 0.726 36 H 0.178 0.822 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.250 -3.194 -14.362 16.868 hybrid contribution -0.352 0.370 -0.229 0.560 sum 7.897 -2.824 -14.592 16.830 Atomic orbital electron populations 1.23694 0.95939 1.01257 1.00052 1.23386 0.96731 0.99256 1.00662 1.21393 0.94706 0.94914 0.93194 1.62015 1.13047 1.45220 1.05837 1.19829 0.92361 0.97733 0.82767 1.21012 1.23716 1.00660 1.08990 0.91989 1.24933 0.96962 0.96420 0.95951 1.69947 1.39268 1.30019 1.14266 0.86505 0.80352 0.83237 0.77387 1.20696 1.21219 1.19837 1.22718 0.86076 0.92557 0.93603 1.47608 1.15812 1.47736 1.02448 1.71177 1.27185 1.05119 0.92434 1.20294 0.93933 1.11978 0.91064 1.19642 0.79426 0.73227 0.86875 1.90925 1.48603 1.44468 1.55695 1.84681 1.35326 1.77729 1.32580 1.22010 0.94968 0.92287 0.96457 1.22646 1.01295 1.05164 0.92808 1.18140 0.83155 0.80423 0.90191 1.91009 1.79507 1.53654 1.14007 0.88414 0.89517 0.88620 0.89473 0.90647 0.96930 0.95100 0.92845 0.90505 0.85846 0.72550 0.82226 0.81327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 14.32 29.01 0.42 -2.45 16 2 C -0.18 -3.08 7.36 -36.03 -0.27 -3.35 16 3 C 0.09 1.57 5.58 -4.98 -0.03 1.55 16 4 N -0.54 -11.07 4.77 -241.43 -1.15 -12.22 16 5 C 0.20 4.88 4.53 -4.98 -0.02 4.85 16 6 C -0.51 -13.74 8.55 -34.44 -0.29 -14.04 16 7 H 0.06 1.70 7.47 -52.49 -0.39 1.30 16 8 C 0.06 1.63 5.46 -17.81 -0.10 1.54 16 9 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 10 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.26 4.56 5.56 -63.30 -0.35 4.21 16 15 N -0.31 -4.98 3.45 -66.35 -0.23 -5.21 16 16 N -0.12 -1.76 8.91 33.40 0.30 -1.46 16 17 C -0.01 -0.07 6.84 -82.85 -0.57 -0.64 16 18 C 0.57 6.22 8.32 34.62 0.29 6.51 16 19 O -0.51 -6.24 17.17 -19.25 -0.33 -6.57 16 20 O -0.49 -4.40 13.24 -40.54 -0.54 -4.94 16 21 C -0.03 -0.36 9.68 -38.99 -0.38 -0.74 16 22 C -0.19 -2.26 10.11 -39.12 -0.40 -2.65 16 23 C 0.48 7.85 7.47 -15.18 -0.11 7.74 16 24 O -0.51 -9.99 16.43 4.94 0.08 -9.91 16 25 H 0.10 1.68 7.84 -52.49 -0.41 1.27 16 26 H 0.09 1.29 8.06 -52.49 -0.42 0.86 16 27 H 0.10 1.51 6.76 -52.49 -0.35 1.15 16 28 H 0.09 1.75 6.91 -51.93 -0.36 1.39 16 29 H 0.08 1.28 6.34 -51.93 -0.33 0.95 16 30 H 0.01 0.33 6.68 -51.93 -0.35 -0.02 16 31 H 0.03 0.83 7.69 -51.93 -0.40 0.43 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.20 6.13 -51.93 -0.32 0.88 16 34 H 0.12 2.30 6.40 -51.93 -0.33 1.97 16 35 H 0.42 1.54 9.11 45.56 0.42 1.95 16 36 H 0.16 1.25 7.72 -52.49 -0.41 0.85 16 37 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -33.08 325.35 -6.27 -39.35 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.21 Total: 2.36 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.81 Total: 2.53 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.35 Total: -44.09 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.79 Total: -21.42 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.08 -6.27 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.984 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds