Wall clock time and date at job start Tue Mar 31 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00193 * 2 1 4 4 N 1.46895 * 109.47036 * 124.17007 * 3 2 1 5 5 C 1.46899 * 111.00227 * 302.15537 * 4 3 2 6 6 C 1.50701 * 109.46822 * 289.88612 * 5 4 3 7 7 H 1.07997 * 120.00311 * 357.30172 * 6 5 4 8 8 C 1.37883 * 119.99748 * 177.29825 * 6 5 4 9 9 N 1.31520 * 119.99587 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47167 * 90.00499 * 10 8 6 12 12 H 1.48503 * 109.47036 * 210.00199 * 10 8 6 13 13 H 1.48499 * 109.47369 * 330.00070 * 10 8 6 14 14 C 1.46901 * 110.99727 * 66.10910 * 4 3 2 15 15 N 1.46509 * 109.46913 * 81.04741 * 14 4 3 16 16 N 1.28391 * 119.09215 * 285.27493 * 15 14 4 17 17 C 1.31455 * 122.25268 * 180.26030 * 16 15 14 18 18 C 1.47758 * 119.89561 * 179.74608 * 17 16 15 19 19 O 1.21476 * 119.99891 * 179.72063 * 18 17 16 20 20 O 1.34719 * 120.00665 * 359.72086 * 18 17 16 21 21 C 1.41621 * 120.20255 * 359.46133 * 17 16 15 22 22 C 1.36311 * 118.23460 * 0.26442 * 21 17 16 23 23 C 1.34601 * 119.09923 * 104.99874 * 15 14 4 24 24 O 1.21976 * 120.22256 * 0.04475 * 23 15 14 25 25 H 1.08000 * 119.99889 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00020 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99889 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46878 * 4.17100 * 3 2 1 29 29 H 1.08996 * 109.47125 * 244.18021 * 3 2 1 30 30 H 1.08992 * 109.47142 * 49.88716 * 5 4 3 31 31 H 1.09003 * 109.46901 * 169.88778 * 5 4 3 32 32 H 0.97000 * 119.99503 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47597 * 321.04606 * 14 4 3 34 34 H 1.09003 * 109.46983 * 201.03675 * 14 4 3 35 35 H 0.96694 * 117.00542 * 180.02562 * 20 18 17 36 36 H 1.07995 * 120.87968 * 180.27558 * 21 17 16 37 37 H 1.07997 * 121.03149 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9820 1.3402 1.1459 5 6 2.2536 1.1688 2.4100 6 6 1.4292 2.3999 2.6854 7 1 1.4783 3.2441 2.0138 8 6 0.6121 2.4483 3.7950 9 7 0.5527 1.4203 4.6132 10 14 -0.4103 3.9739 4.1361 11 1 -1.7335 3.8410 3.4753 12 1 -0.6016 4.1243 5.6011 13 1 0.2913 5.1694 3.6034 14 6 4.0378 0.3285 1.0054 15 7 5.0860 0.8366 0.1167 16 7 4.8644 0.8834 -1.1470 17 6 5.7621 1.3231 -2.0008 18 6 5.4537 1.3490 -3.4456 19 8 6.2799 1.7596 -4.2358 20 8 4.2562 0.9173 -3.8868 21 6 7.0216 1.7775 -1.5395 22 6 7.2699 1.7389 -0.1998 23 6 6.2526 1.2468 0.6481 24 8 6.4306 1.1936 1.8537 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3576 2.1322 0.0747 29 1 2.6329 1.3959 -0.9250 30 1 1.5978 0.3013 2.3367 31 1 2.9652 1.0189 3.2219 32 1 -0.0224 1.4542 5.3936 33 1 3.6141 -0.5828 0.5835 34 1 4.4654 0.1111 1.9842 35 1 4.1007 0.9531 -4.8405 36 1 7.7654 2.1450 -2.2308 37 1 8.2148 2.0747 0.2012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:13 Heat of formation + Delta-G solvation = -40.122098 kcal Electronic energy + Delta-G solvation = -23596.978911 eV Core-core repulsion = 19955.398210 eV Total energy + Delta-G solvation = -3641.580702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.30442 -41.09619 -39.15011 -38.92040 -37.17849 -35.70594 -34.81759 -33.53807 -32.62495 -29.68426 -28.49091 -26.69663 -26.12368 -24.71905 -23.43038 -22.81711 -20.71613 -20.17809 -18.86419 -18.55064 -18.36582 -18.01052 -17.80650 -17.08860 -16.75102 -16.68869 -16.20954 -15.91049 -15.37499 -15.01598 -14.77623 -14.41795 -14.24591 -14.16959 -14.02480 -13.42913 -13.12972 -12.93130 -12.72109 -12.68793 -12.56701 -12.30117 -12.18954 -12.07594 -11.97128 -11.70006 -11.42914 -10.96274 -10.60993 -10.16227 -9.85311 -9.24829 -8.19837 -6.28564 -0.68072 -0.11499 0.85911 1.39635 1.40585 1.41561 1.47741 1.52186 1.85946 2.31576 2.40627 2.86875 3.13843 3.21224 3.51720 3.68677 3.92643 4.05673 4.10081 4.16579 4.32722 4.40774 4.56184 4.57401 4.83677 4.90436 5.00771 5.06775 5.14548 5.25665 5.46568 5.60245 5.74786 5.88797 5.99025 6.19874 6.32573 6.42775 6.78615 6.83642 6.98786 7.39708 8.90639 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.004630 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.820156 B = 6046.094541 C = 6770.818748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.189 4.189 3 C 0.093 3.907 4 N -0.551 5.551 5 C 0.216 3.784 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.962 3.038 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.269 3.731 15 N -0.321 5.321 16 N -0.148 5.148 17 C 0.009 3.991 18 C 0.576 3.424 19 O -0.518 6.518 20 O -0.493 6.493 21 C -0.017 4.017 22 C -0.184 4.184 23 C 0.470 3.530 24 O -0.559 6.559 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.000 1.000 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.439 0.561 36 H 0.197 0.803 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -2.747 -18.044 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.209 4.209 3 C -0.034 4.034 4 N -0.275 5.275 5 C 0.091 3.909 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.787 3.213 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.059 3.941 15 N -0.144 5.144 16 N 0.019 4.981 17 C -0.159 4.159 18 C 0.417 3.583 19 O -0.406 6.406 20 O -0.306 6.306 21 C -0.039 4.039 22 C -0.213 4.213 23 C 0.270 3.730 24 O -0.439 6.439 25 H 0.107 0.893 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.302 0.698 36 H 0.214 0.786 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.660 -2.617 -16.902 19.171 hybrid contribution -0.428 0.175 0.326 0.566 sum 8.231 -2.441 -16.576 18.667 Atomic orbital electron populations 1.23853 0.95962 1.01901 0.99225 1.23407 0.96969 0.99135 1.01341 1.21302 0.94263 0.95004 0.92817 1.61822 1.13671 1.47100 1.04869 1.19373 0.91239 0.96345 0.83958 1.21281 1.24081 1.01223 1.09014 0.92603 1.25744 0.98091 0.99301 0.95701 1.70061 1.40125 1.31928 1.14764 0.85494 0.79028 0.79533 0.77237 1.19490 1.20913 1.19567 1.22458 0.85441 0.92578 0.93633 1.47266 1.15316 1.48824 1.03012 1.71149 1.28282 1.07036 0.91631 1.20877 0.94105 1.09278 0.91674 1.19339 0.79839 0.73076 0.86040 1.90939 1.49071 1.44908 1.55648 1.84638 1.34057 1.76936 1.34942 1.22353 0.94752 0.90528 0.96261 1.22825 1.01036 1.04690 0.92778 1.18857 0.83866 0.80080 0.90205 1.90982 1.80417 1.56364 1.16097 0.89302 0.87402 0.87088 0.91637 0.88955 0.98264 0.98425 0.92699 0.88582 0.87895 0.69774 0.78576 0.78582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.61 14.32 67.78 0.97 -4.64 16 2 C -0.19 -6.36 7.36 25.64 0.19 -6.17 16 3 C 0.09 3.44 5.58 85.56 0.48 3.92 16 4 N -0.55 -23.35 4.77 -917.75 -4.38 -27.73 16 5 C 0.22 11.16 4.53 85.56 0.39 11.55 16 6 C -0.52 -28.89 8.55 25.60 0.22 -28.67 16 7 H 0.06 3.12 7.47 -2.91 -0.02 3.10 16 8 C 0.01 0.58 5.46 84.66 0.46 1.04 16 9 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 10 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 C 0.27 9.75 5.56 170.80 0.95 10.69 16 15 N -0.32 -10.27 3.45 -482.03 -1.66 -11.94 16 16 N -0.15 -4.01 8.91 -48.24 -0.43 -4.44 16 17 C 0.01 0.20 6.84 42.55 0.29 0.49 16 18 C 0.58 10.73 8.32 70.34 0.59 11.32 16 19 O -0.52 -10.75 17.17 19.91 0.34 -10.41 16 20 O -0.49 -7.22 13.24 -56.28 -0.75 -7.96 16 21 C -0.02 -0.29 9.68 22.66 0.22 -0.07 16 22 C -0.18 -4.01 10.11 22.57 0.23 -3.78 16 23 C 0.47 15.31 7.47 85.02 0.64 15.95 16 24 O -0.56 -23.01 16.43 -5.24 -0.09 -23.09 16 25 H 0.09 3.04 7.84 -2.91 -0.02 3.02 16 26 H 0.11 3.04 8.06 -2.91 -0.02 3.01 16 27 H 0.11 3.37 6.76 -2.91 -0.02 3.35 16 28 H 0.07 2.68 6.91 -2.39 -0.02 2.66 16 29 H 0.09 3.06 6.34 -2.39 -0.02 3.04 16 30 H 0.00 -0.02 6.68 -2.39 -0.02 -0.04 16 31 H 0.00 -0.13 7.69 -2.39 -0.02 -0.15 16 32 H 0.26 14.76 8.31 -92.71 -0.77 13.98 16 33 H 0.10 3.03 6.13 -2.39 -0.01 3.01 16 34 H 0.10 4.13 6.40 -2.39 -0.02 4.12 16 35 H 0.44 1.71 9.11 -74.06 -0.67 1.03 16 36 H 0.20 2.10 7.72 -2.91 -0.02 2.08 16 37 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -73.18 325.35 1.41 -71.77 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.45 Total: 10.55 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.61 Total: 11.63 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -6.19 Total: -98.69 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.49 Total: -41.47 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.18 1.41 -71.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.646 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds