Wall clock time and date at job start Tue Mar 31 2020 08:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47363 * 2 1 4 4 C 1.50702 * 109.46758 * 240.00197 * 2 1 3 5 5 O 1.21301 * 119.99717 * 248.15913 * 4 2 1 6 6 N 1.34776 * 120.00584 * 68.15964 * 4 2 1 7 7 C 1.37104 * 119.99215 * 5.26741 * 6 4 2 8 8 H 1.07999 * 119.99542 * 230.36858 * 7 6 4 9 9 C 1.38947 * 120.00179 * 50.37661 * 7 6 4 10 10 N 1.31411 * 119.99955 * 199.95765 * 9 7 6 11 11 Si 1.86802 * 119.99975 * 19.94629 * 9 7 6 12 12 H 1.48506 * 109.46687 * 90.21758 * 11 9 7 13 13 H 1.48501 * 109.47022 * 210.21124 * 11 9 7 14 14 H 1.48491 * 109.47227 * 330.21767 * 11 9 7 15 15 C 1.46495 * 120.00399 * 185.26862 * 6 4 2 16 16 C 1.53000 * 109.46945 * 93.15053 * 15 6 4 17 17 C 1.50705 * 109.46743 * 179.97438 * 16 15 6 18 18 O 1.20823 * 120.00101 * 0.02562 * 17 16 15 19 19 O 1.34226 * 119.99733 * 179.97438 * 17 16 15 20 20 C 1.50694 * 109.47339 * 120.00418 * 2 1 3 21 21 C 1.38603 * 120.80417 * 59.71621 * 20 2 1 22 22 N 1.32331 * 119.10227 * 179.72289 * 21 20 2 23 23 C 1.31793 * 120.82131 * 0.56662 * 22 21 20 24 24 N 1.31787 * 121.75551 * 359.70733 * 23 22 21 25 25 C 1.32342 * 120.81837 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46806 * 294.85304 * 1 2 3 27 27 H 1.09002 * 109.47080 * 54.84925 * 1 2 3 28 28 H 1.08999 * 109.47309 * 174.85469 * 1 2 3 29 29 H 0.97001 * 120.00118 * 179.97438 * 10 9 7 30 30 H 1.08999 * 109.47290 * 213.14870 * 15 6 4 31 31 H 1.08999 * 109.46965 * 333.14832 * 15 6 4 32 32 H 1.08995 * 109.47372 * 299.99725 * 16 15 6 33 33 H 1.08999 * 109.47469 * 60.00087 * 16 15 6 34 34 H 0.96699 * 117.00081 * 180.02562 * 19 17 16 35 35 H 1.08000 * 120.44076 * 359.97438 * 21 20 2 36 36 H 1.07999 * 119.12084 * 179.72862 * 23 22 21 37 37 H 1.07995 * 120.44348 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6029 -1.7756 -1.1254 6 7 1.8475 -0.1622 -2.4478 7 6 1.3003 1.0899 -2.5597 8 1 0.4694 1.2582 -3.2288 9 6 1.8149 2.1423 -1.8126 10 7 1.0885 3.2175 -1.6049 11 14 3.5392 2.0287 -1.1030 12 1 4.5135 2.5784 -2.0797 13 1 3.6080 2.8099 0.1580 14 1 3.8667 0.6075 -0.8235 15 6 2.2313 -0.9042 -3.6513 16 6 1.0238 -1.6829 -4.1770 17 6 1.4186 -2.4457 -5.4154 18 8 2.5496 -2.3742 -5.8341 19 8 0.5138 -3.2053 -6.0526 20 6 2.0324 -0.7105 1.2303 21 6 1.7030 -2.0354 1.4691 22 7 2.1672 -2.6280 2.5575 23 6 2.9238 -1.9710 3.4135 24 7 3.2527 -0.7092 3.2222 25 6 2.8298 -0.0528 2.1537 26 1 -0.3633 0.4319 0.9325 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3634 -1.0235 -0.0922 29 1 1.4475 3.9521 -1.0830 30 1 2.5738 -0.2059 -4.4149 31 1 3.0346 -1.5998 -3.4085 32 1 0.6813 -2.3813 -3.4135 33 1 0.2205 -0.9873 -4.4198 34 1 0.8138 -3.6761 -6.8421 35 1 1.0793 -2.5780 0.7741 36 1 3.2841 -2.4802 4.2951 37 1 3.1033 0.9810 2.0028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589342115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:06 Heat of formation + Delta-G solvation = -68.061564 kcal Electronic energy + Delta-G solvation = -24114.406281 eV Core-core repulsion = 20471.614033 eV Total energy + Delta-G solvation = -3642.792248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88754 -40.10316 -39.16615 -36.08536 -35.19982 -34.43191 -33.37675 -32.57534 -30.90272 -29.48307 -25.44199 -25.02312 -24.26804 -24.07775 -22.19439 -20.65420 -19.42385 -18.01588 -17.83204 -17.37632 -16.75770 -16.51773 -15.93455 -15.58867 -15.26281 -14.58062 -14.35695 -13.87689 -13.84886 -13.41662 -13.26478 -13.17220 -13.04237 -12.93716 -12.62110 -11.95087 -11.71337 -11.56796 -11.40388 -11.34210 -11.02754 -10.68627 -10.57692 -10.48947 -10.42352 -10.32019 -9.99803 -9.29022 -9.11706 -8.94789 -8.72766 -7.88522 -6.70630 -4.43630 1.20769 1.38682 2.39505 2.89007 3.04308 3.13021 3.17547 3.54671 3.89566 4.02736 4.31254 4.40919 4.50498 4.67985 4.96125 5.07423 5.21311 5.25083 5.41080 5.59572 5.63189 5.75738 5.86340 5.93757 5.97452 6.14535 6.26710 6.38795 6.50351 6.52871 6.64979 6.68203 6.93187 7.22920 7.43734 7.49078 8.03960 8.24705 8.33141 8.73628 9.01984 9.45670 10.37550 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.006354 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.142630 B = 4405.408576 C = 5544.614068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 H 0.099 0.901 4 C 0.502 3.498 5 O -0.586 6.586 6 N -0.468 5.468 7 C -0.354 4.354 8 H 0.104 0.896 9 C 0.080 3.920 10 N -0.846 5.846 11 Si 0.840 3.160 12 H -0.272 1.272 13 H -0.273 1.273 14 H -0.253 1.253 15 C 0.120 3.880 16 C -0.123 4.123 17 C 0.484 3.516 18 O -0.519 6.519 19 O -0.521 6.521 20 C -0.155 4.155 21 C 0.182 3.818 22 N -0.524 5.524 23 C 0.274 3.726 24 N -0.524 5.524 25 C 0.141 3.859 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.279 0.721 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.404 0.596 35 H 0.166 0.834 36 H 0.191 0.809 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 -5.866 0.724 6.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.075 4.075 3 H 0.117 0.883 4 C 0.292 3.708 5 O -0.469 6.469 6 N -0.189 5.189 7 C -0.481 4.481 8 H 0.122 0.878 9 C -0.130 4.130 10 N -0.479 5.479 11 Si 0.665 3.335 12 H -0.198 1.198 13 H -0.198 1.198 14 H -0.178 1.178 15 C -0.003 4.003 16 C -0.162 4.162 17 C 0.327 3.673 18 O -0.407 6.407 19 O -0.333 6.333 20 C -0.159 4.159 21 C 0.017 3.983 22 N -0.237 5.237 23 C -0.014 4.014 24 N -0.237 5.237 25 C -0.024 4.024 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.262 0.738 35 H 0.183 0.817 36 H 0.208 0.792 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.969 -6.414 1.898 6.973 hybrid contribution 0.945 0.489 -1.041 1.489 sum -1.024 -5.925 0.858 6.074 Atomic orbital electron populations 1.21640 0.91232 1.01936 1.03842 1.20105 0.98792 0.99532 0.89108 0.88305 1.20220 0.80593 0.84833 0.85198 1.90581 1.45515 1.23958 1.86857 1.43569 1.56936 1.15826 1.02577 1.18904 1.15990 0.82736 1.30424 0.87835 1.25529 0.96845 0.94933 0.95645 1.69700 1.35748 1.06786 1.35690 0.87465 0.86281 0.80015 0.79744 1.19821 1.19805 1.17766 1.21233 0.94147 0.95941 0.89019 1.21766 1.02859 0.99465 0.92098 1.23688 0.82624 0.76256 0.84752 1.90706 1.21710 1.61898 1.66378 1.84577 1.45680 1.59248 1.43767 1.21478 0.99398 0.97028 0.97991 1.22985 0.92830 0.90860 0.91661 1.68401 1.11772 1.39344 1.04215 1.24818 0.91387 0.87731 0.97427 1.68357 1.23040 1.10534 1.21785 1.23070 0.90753 0.99976 0.88561 0.92900 0.88180 0.93309 0.91043 0.90036 0.90460 0.87824 0.87103 0.73774 0.81723 0.79240 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.73 37.16 0.32 -1.91 16 2 C -0.05 -1.05 1.45 -92.92 -0.13 -1.18 16 3 H 0.10 2.07 2.82 -51.93 -0.15 1.93 16 4 C 0.50 10.87 4.40 -10.99 -0.05 10.82 16 5 O -0.59 -13.73 14.43 5.54 0.08 -13.65 16 6 N -0.47 -9.94 1.99 -114.81 -0.23 -10.16 16 7 C -0.35 -7.97 7.65 -14.93 -0.11 -8.09 16 8 H 0.10 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.08 1.86 4.10 -17.47 -0.07 1.79 16 10 N -0.85 -20.48 13.96 55.50 0.77 -19.71 16 11 Si 0.84 18.76 24.89 -169.99 -4.23 14.53 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.25 -5.95 5.38 56.52 0.30 -5.64 16 15 C 0.12 2.31 4.74 -4.04 -0.02 2.29 16 16 C -0.12 -1.92 6.13 -27.88 -0.17 -2.09 16 17 C 0.48 7.23 8.33 36.01 0.30 7.53 16 18 O -0.52 -9.24 16.74 -18.75 -0.31 -9.56 16 19 O -0.52 -6.04 13.42 -39.25 -0.53 -6.57 16 20 C -0.15 -2.90 4.48 -104.36 -0.47 -3.37 16 21 C 0.18 3.27 9.25 -17.20 -0.16 3.11 16 22 N -0.52 -9.03 10.44 -14.58 -0.15 -9.18 16 23 C 0.27 4.33 12.28 -92.16 -1.13 3.20 16 24 N -0.52 -9.06 10.44 -14.58 -0.15 -9.22 16 25 C 0.14 2.56 10.96 -17.20 -0.19 2.37 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.90 6.50 -51.93 -0.34 1.57 16 28 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 29 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 30 H 0.08 1.56 8.02 -51.93 -0.42 1.15 16 31 H 0.08 1.60 7.23 -51.93 -0.38 1.22 16 32 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.40 2.84 9.10 45.56 0.41 3.25 16 35 H 0.17 2.79 7.54 -52.49 -0.40 2.39 16 36 H 0.19 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.16 2.69 8.01 -52.49 -0.42 2.27 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -29.14 314.11 -5.32 -34.46 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.42 Total: 9.85 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -1.88 Total: 14.47 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.24 Total: -48.27 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.76 Total: -29.78 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.23 Total: 14.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.14 -5.32 -34.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.600 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds