Wall clock time and date at job start Tue Mar 31 2020 08:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47363 * 2 1 4 4 C 1.50702 * 109.46758 * 240.00197 * 2 1 3 5 5 O 1.21301 * 119.99717 * 248.15913 * 4 2 1 6 6 N 1.34776 * 120.00584 * 68.15964 * 4 2 1 7 7 C 1.37104 * 119.99215 * 5.26741 * 6 4 2 8 8 H 1.07999 * 119.99542 * 230.36858 * 7 6 4 9 9 C 1.38947 * 120.00179 * 50.37661 * 7 6 4 10 10 N 1.31411 * 119.99955 * 199.95765 * 9 7 6 11 11 Si 1.86802 * 119.99975 * 19.94629 * 9 7 6 12 12 H 1.48506 * 109.46687 * 90.21758 * 11 9 7 13 13 H 1.48501 * 109.47022 * 210.21124 * 11 9 7 14 14 H 1.48491 * 109.47227 * 330.21767 * 11 9 7 15 15 C 1.46495 * 120.00399 * 185.26862 * 6 4 2 16 16 C 1.53000 * 109.46945 * 93.15053 * 15 6 4 17 17 C 1.50705 * 109.46743 * 179.97438 * 16 15 6 18 18 O 1.20823 * 120.00101 * 0.02562 * 17 16 15 19 19 O 1.34226 * 119.99733 * 179.97438 * 17 16 15 20 20 C 1.50694 * 109.47339 * 120.00418 * 2 1 3 21 21 C 1.38603 * 120.80417 * 59.71621 * 20 2 1 22 22 N 1.32331 * 119.10227 * 179.72289 * 21 20 2 23 23 C 1.31793 * 120.82131 * 0.56662 * 22 21 20 24 24 N 1.31787 * 121.75551 * 359.70733 * 23 22 21 25 25 C 1.32342 * 120.81837 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46806 * 294.85304 * 1 2 3 27 27 H 1.09002 * 109.47080 * 54.84925 * 1 2 3 28 28 H 1.08999 * 109.47309 * 174.85469 * 1 2 3 29 29 H 0.97001 * 120.00118 * 179.97438 * 10 9 7 30 30 H 1.08999 * 109.47290 * 213.14870 * 15 6 4 31 31 H 1.08999 * 109.46965 * 333.14832 * 15 6 4 32 32 H 1.08995 * 109.47372 * 299.99725 * 16 15 6 33 33 H 1.08999 * 109.47469 * 60.00087 * 16 15 6 34 34 H 0.96699 * 117.00081 * 180.02562 * 19 17 16 35 35 H 1.08000 * 120.44076 * 359.97438 * 21 20 2 36 36 H 1.07999 * 119.12084 * 179.72862 * 23 22 21 37 37 H 1.07995 * 120.44348 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6029 -1.7756 -1.1254 6 7 1.8475 -0.1622 -2.4478 7 6 1.3003 1.0899 -2.5597 8 1 0.4694 1.2582 -3.2288 9 6 1.8149 2.1423 -1.8126 10 7 1.0885 3.2175 -1.6049 11 14 3.5392 2.0287 -1.1030 12 1 4.5135 2.5784 -2.0797 13 1 3.6080 2.8099 0.1580 14 1 3.8667 0.6075 -0.8235 15 6 2.2313 -0.9042 -3.6513 16 6 1.0238 -1.6829 -4.1770 17 6 1.4186 -2.4457 -5.4154 18 8 2.5496 -2.3742 -5.8341 19 8 0.5138 -3.2053 -6.0526 20 6 2.0324 -0.7105 1.2303 21 6 1.7030 -2.0354 1.4691 22 7 2.1672 -2.6280 2.5575 23 6 2.9238 -1.9710 3.4135 24 7 3.2527 -0.7092 3.2222 25 6 2.8298 -0.0528 2.1537 26 1 -0.3633 0.4319 0.9325 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3634 -1.0235 -0.0922 29 1 1.4475 3.9521 -1.0830 30 1 2.5738 -0.2059 -4.4149 31 1 3.0346 -1.5998 -3.4085 32 1 0.6813 -2.3813 -3.4135 33 1 0.2205 -0.9873 -4.4198 34 1 0.8138 -3.6761 -6.8421 35 1 1.0793 -2.5780 0.7741 36 1 3.2841 -2.4802 4.2951 37 1 3.1033 0.9810 2.0028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589342115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:05 Heat of formation + Delta-G solvation = -87.154820 kcal Electronic energy + Delta-G solvation = -24115.234227 eV Core-core repulsion = 20471.614033 eV Total energy + Delta-G solvation = -3643.620194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.28157 -41.35182 -40.71476 -37.25978 -36.82753 -35.94799 -34.71395 -34.25756 -32.41496 -30.86624 -27.04240 -26.52564 -25.72624 -25.46340 -23.60832 -21.93485 -21.12327 -19.46800 -19.12120 -18.66592 -18.22963 -17.90420 -17.34356 -17.00521 -16.81235 -16.18024 -15.81847 -15.49600 -15.39250 -14.78835 -14.65378 -14.60970 -14.55531 -14.30348 -14.08496 -13.47013 -13.17460 -13.08853 -12.87709 -12.81339 -12.54449 -12.29692 -12.06714 -11.96962 -11.82782 -11.66429 -11.58559 -11.04547 -10.66331 -10.36150 -10.24640 -9.62018 -8.54165 -6.25572 -0.13124 0.01569 1.10218 1.20707 1.24405 1.34675 1.76231 2.04050 2.09730 2.63299 2.83503 2.90495 3.15932 3.22030 3.59350 3.63638 3.75872 3.91347 4.00619 4.19800 4.31826 4.41703 4.46811 4.55084 4.66503 4.78826 4.82080 4.98594 5.04269 5.09855 5.36607 5.49311 5.60315 5.69572 5.75100 5.88350 6.43308 6.94644 7.01144 7.01399 7.27232 7.72953 8.57299 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.006354 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.142630 B = 4405.408576 C = 5544.614068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.051 4.051 3 H 0.086 0.914 4 C 0.499 3.501 5 O -0.606 6.606 6 N -0.472 5.472 7 C -0.342 4.342 8 H 0.096 0.904 9 C 0.064 3.936 10 N -0.868 5.868 11 Si 0.870 3.130 12 H -0.285 1.285 13 H -0.256 1.256 14 H -0.271 1.271 15 C 0.119 3.881 16 C -0.115 4.115 17 C 0.496 3.504 18 O -0.552 6.552 19 O -0.508 6.508 20 C -0.171 4.171 21 C 0.181 3.819 22 N -0.531 5.531 23 C 0.279 3.721 24 N -0.531 5.531 25 C 0.135 3.865 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.283 0.717 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.428 0.572 35 H 0.171 0.829 36 H 0.232 0.768 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 -6.770 1.318 7.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 H 0.103 0.897 4 C 0.289 3.711 5 O -0.491 6.491 6 N -0.193 5.193 7 C -0.469 4.469 8 H 0.113 0.887 9 C -0.144 4.144 10 N -0.503 5.503 11 Si 0.696 3.304 12 H -0.212 1.212 13 H -0.181 1.181 14 H -0.196 1.196 15 C -0.005 4.005 16 C -0.153 4.153 17 C 0.340 3.660 18 O -0.443 6.443 19 O -0.322 6.322 20 C -0.176 4.176 21 C 0.015 3.985 22 N -0.245 5.245 23 C -0.009 4.009 24 N -0.245 5.245 25 C -0.030 4.030 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.289 0.711 35 H 0.188 0.812 36 H 0.248 0.752 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.567 -7.326 2.477 8.148 hybrid contribution 1.120 0.674 -1.253 1.811 sum -1.447 -6.652 1.224 6.916 Atomic orbital electron populations 1.21577 0.89673 1.02770 1.03832 1.20042 1.00087 0.98459 0.88696 0.89668 1.20581 0.80071 0.84690 0.85772 1.90558 1.46385 1.24968 1.87211 1.43644 1.56783 1.15608 1.03279 1.18795 1.15477 0.83063 1.29593 0.88694 1.25713 0.97695 0.94975 0.95984 1.69717 1.36420 1.07368 1.36790 0.87049 0.84656 0.78870 0.79850 1.21202 1.18057 1.19647 1.21223 0.95400 0.95626 0.88205 1.21557 1.01294 0.99662 0.92818 1.23351 0.82220 0.76053 0.84386 1.90707 1.23123 1.63206 1.67302 1.84504 1.44413 1.58556 1.44703 1.21425 1.00623 0.97552 0.97981 1.23104 0.92784 0.90603 0.92028 1.68485 1.12287 1.39418 1.04286 1.25668 0.89950 0.87291 0.97949 1.68441 1.23287 1.11256 1.21492 1.23224 0.90568 1.00441 0.88802 0.91381 0.89979 0.91669 0.90676 0.90499 0.92242 0.87187 0.85792 0.71062 0.81194 0.75197 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.73 71.98 0.63 -3.44 16 2 C -0.05 -1.96 1.45 -12.29 -0.02 -1.98 16 3 H 0.09 3.54 2.82 -2.39 -0.01 3.53 16 4 C 0.50 21.44 4.40 87.66 0.39 21.83 16 5 O -0.61 -28.32 14.43 -3.09 -0.04 -28.36 16 6 N -0.47 -19.99 1.99 -635.54 -1.26 -21.25 16 7 C -0.34 -15.36 7.65 84.04 0.64 -14.72 16 8 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 9 C 0.06 2.95 4.10 84.93 0.35 3.30 16 10 N -0.87 -41.72 13.96 21.66 0.30 -41.42 16 11 Si 0.87 38.48 24.89 68.60 1.71 40.19 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 14 H -0.27 -12.75 5.38 99.48 0.54 -12.22 16 15 C 0.12 4.56 4.74 86.38 0.41 4.97 16 16 C -0.11 -3.45 6.13 29.85 0.18 -3.27 16 17 C 0.50 14.08 8.33 71.24 0.59 14.68 16 18 O -0.55 -19.31 16.74 21.97 0.37 -18.94 16 19 O -0.51 -10.47 13.42 -51.37 -0.69 -11.16 16 20 C -0.17 -6.25 4.48 -19.69 -0.09 -6.34 16 21 C 0.18 6.23 9.25 84.70 0.78 7.02 16 22 N -0.53 -17.23 10.44 -200.05 -2.09 -19.32 16 23 C 0.28 8.08 12.28 180.89 2.22 10.31 16 24 N -0.53 -17.37 10.44 -200.05 -2.09 -19.46 16 25 C 0.13 4.72 10.96 84.70 0.93 5.65 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.08 3.06 6.50 -2.39 -0.02 3.05 16 28 H 0.06 1.93 7.66 -2.39 -0.02 1.91 16 29 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 30 H 0.08 2.98 8.02 -2.39 -0.02 2.96 16 31 H 0.06 2.49 7.23 -2.39 -0.02 2.47 16 32 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.43 4.77 9.10 -74.06 -0.67 4.10 16 35 H 0.17 5.55 7.54 -2.91 -0.02 5.52 16 36 H 0.23 4.51 8.06 -2.91 -0.02 4.48 16 37 H 0.16 5.40 8.01 -2.91 -0.02 5.38 16 Total: -1.00 -61.10 314.11 3.50 -57.60 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.28 Total: 24.12 kcal Atomic # 6 Polarization: 30.98 SS G_CDS: 7.02 Total: 38.00 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -5.14 Total: -101.45 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -0.37 Total: -58.46 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.71 Total: 40.19 kcal Total: -61.10 3.50 -57.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.556 kcal (2) G-P(sol) polarization free energy of solvation -61.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds