Wall clock time and date at job start Tue Mar 31 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47043 * 2 1 4 4 H 1.08993 * 109.47526 * 305.00539 * 3 2 1 5 5 C 1.50705 * 109.47163 * 185.00154 * 3 2 1 6 6 H 1.08001 * 119.99735 * 240.00696 * 5 3 2 7 7 C 1.37874 * 119.99652 * 60.00643 * 5 3 2 8 8 N 1.31511 * 120.00361 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99776 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47355 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47530 * 120.00015 * 9 7 5 12 12 H 1.48505 * 109.47247 * 239.99696 * 9 7 5 13 13 N 1.46502 * 109.46729 * 65.00634 * 3 2 1 14 14 C 1.34780 * 120.00113 * 275.00051 * 13 3 2 15 15 O 1.21578 * 119.99417 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00106 * 180.02562 * 14 13 3 17 17 C 1.39222 * 119.99874 * 185.32119 * 16 14 13 18 18 C 1.39506 * 120.55881 * 34.85049 * 17 16 14 19 19 C 1.38245 * 118.43231 * 179.97438 * 18 17 16 20 20 C 1.38824 * 119.46521 * 0.02562 * 19 18 17 21 21 N 1.31347 * 121.11007 * 359.97438 * 20 19 18 22 22 C 1.32896 * 121.70834 * 0.02562 * 21 20 19 23 23 C 1.47671 * 119.80010 * 180.02562 * 22 21 20 24 24 O 1.21469 * 120.00172 * 175.06113 * 23 22 21 25 25 O 1.34734 * 119.99617 * 355.06052 * 23 22 21 26 26 H 1.09001 * 109.47105 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47059 * 299.99518 * 1 2 3 28 28 H 1.08997 * 109.47768 * 59.99464 * 1 2 3 29 29 H 1.09004 * 109.47203 * 240.01017 * 2 1 3 30 30 H 1.08997 * 109.47768 * 120.00536 * 2 1 3 31 31 H 0.97003 * 120.00253 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00307 * 94.99458 * 13 3 2 33 33 H 0.97000 * 120.00277 * 5.31497 * 16 14 13 34 34 H 1.08004 * 120.78242 * 0.25400 * 18 17 16 35 35 H 1.08000 * 120.26572 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.44528 * 179.97438 * 20 19 18 37 37 H 0.96709 * 116.99786 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2281 8 7 3.4061 0.3369 -2.1730 9 14 6.0048 0.8802 -1.3813 10 1 6.5988 1.5453 -0.1938 11 1 6.4961 -0.5188 -1.4631 12 1 6.3998 1.6160 -2.6093 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3673 15 8 -0.3412 2.6325 0.4321 16 7 0.0789 3.2671 2.5187 17 6 -1.2155 3.7547 2.6777 18 6 -2.2998 3.0876 2.1073 19 6 -3.5660 3.6103 2.2933 20 6 -3.7225 4.7734 3.0347 21 7 -2.6877 5.3858 3.5632 22 6 -1.4508 4.9234 3.4130 23 6 -0.3179 5.6454 4.0260 24 8 0.8023 5.1794 3.9679 25 8 -0.5268 6.8213 4.6498 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8291 -0.0608 -2.9501 32 1 2.2720 2.1230 1.9979 33 1 0.7241 3.3612 3.2368 34 1 -2.1539 2.1816 1.5377 35 1 -4.4264 3.1181 1.8645 36 1 -4.7119 5.1817 3.1795 37 1 0.2456 7.2570 5.0355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589464769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:59 Heat of formation + Delta-G solvation = -76.541907 kcal Electronic energy + Delta-G solvation = -23541.088572 eV Core-core repulsion = 19897.928589 eV Total energy + Delta-G solvation = -3643.159983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23720 -39.76105 -39.10816 -36.44723 -35.63658 -34.38146 -32.67351 -32.29800 -31.17116 -29.79904 -26.98003 -25.36825 -23.97677 -22.88765 -21.92107 -20.83294 -19.59322 -18.52841 -18.30684 -17.69377 -17.51569 -16.32681 -16.04234 -15.72331 -15.28856 -14.96582 -14.84297 -14.26708 -13.88418 -13.63196 -13.40322 -13.21193 -12.75018 -12.62062 -12.35010 -11.71800 -11.65795 -11.31119 -11.09911 -10.97094 -10.88075 -10.69905 -10.38503 -10.22452 -9.98152 -9.82849 -9.67203 -9.34901 -9.09011 -8.55234 -8.37941 -7.87360 -6.16328 -4.25437 0.39117 1.14429 2.29979 2.72882 3.01134 3.22117 3.30525 3.33849 3.51673 3.86828 4.18173 4.29601 4.66934 4.73043 4.87067 4.97189 5.15787 5.26839 5.31400 5.86755 6.04062 6.16907 6.27105 6.33492 6.39991 6.58415 6.74815 6.93133 7.02728 7.26806 7.29393 7.35839 7.50318 7.61010 7.79649 7.83166 7.91465 8.12947 8.65643 8.76662 9.11671 9.42203 10.89162 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021995 B = 0.004189 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.734259 B = 6682.347296 C = 7730.760905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.285 3.715 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.691 3.309 15 O -0.577 6.577 16 N -0.681 5.681 17 C 0.217 3.783 18 C -0.093 4.093 19 C -0.113 4.113 20 C 0.064 3.936 21 N -0.415 5.415 22 C 0.027 3.973 23 C 0.550 3.450 24 O -0.513 6.513 25 O -0.492 6.492 26 H 0.023 0.977 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.418 0.582 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.165 0.835 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 6.493 12.120 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.183 3.817 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.361 5.361 14 C 0.392 3.608 15 O -0.454 6.454 16 N -0.332 5.332 17 C 0.113 3.887 18 C -0.121 4.121 19 C -0.133 4.133 20 C -0.100 4.100 21 N -0.125 5.125 22 C -0.111 4.111 23 C 0.394 3.606 24 O -0.401 6.401 25 O -0.302 6.302 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.261 0.739 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.182 0.818 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.686 6.732 11.333 17.616 hybrid contribution 2.204 -0.427 0.274 2.262 sum -9.482 6.306 11.607 16.260 Atomic orbital electron populations 1.21829 0.98402 0.98013 1.01085 1.21963 0.92652 0.99750 1.02427 1.18792 0.94243 0.88916 0.79758 0.93090 1.21264 0.90569 1.39062 1.06414 0.91936 1.24866 0.98702 0.94723 0.95304 1.69897 1.35088 1.37608 1.09334 0.86382 0.84715 0.77778 0.78162 1.19723 1.20837 1.20861 1.45875 1.13201 1.57507 1.19526 1.16145 0.84088 0.78741 0.81848 1.90905 1.52154 1.64414 1.37958 1.43263 1.11171 1.59887 1.18927 1.18349 0.86129 0.90231 0.94018 1.21805 0.90329 1.00990 0.99014 1.22395 0.97917 0.96472 0.96541 1.22718 0.97524 0.93649 0.96117 1.67548 0.97732 1.29920 1.17328 1.19590 0.91398 0.93525 1.06563 1.20331 0.86823 0.78921 0.74535 1.90770 1.24595 1.67409 1.57310 1.84684 1.43946 1.34477 1.67088 0.95808 0.94527 0.93038 0.88090 0.94943 0.92563 0.77864 0.73932 0.82271 0.83675 0.81808 0.73039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.58 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.28 7.02 2.24 -69.08 -0.15 6.87 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.29 11.29 55.43 0.63 -23.66 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -14.69 5.03 -59.81 -0.30 -15.00 16 14 C 0.69 13.74 6.87 -86.92 -0.60 13.14 16 15 O -0.58 -12.85 11.31 5.30 0.06 -12.79 16 16 N -0.68 -11.20 4.70 -13.96 -0.07 -11.27 16 17 C 0.22 3.31 6.27 -83.35 -0.52 2.79 16 18 C -0.09 -1.29 8.74 -39.11 -0.34 -1.63 16 19 C -0.11 -1.17 10.10 -39.36 -0.40 -1.56 16 20 C 0.06 0.66 11.17 -17.54 -0.20 0.47 16 21 N -0.41 -5.46 10.12 -9.69 -0.10 -5.56 16 22 C 0.03 0.39 6.76 -82.87 -0.56 -0.17 16 23 C 0.55 7.48 8.30 34.58 0.29 7.76 16 24 O -0.51 -7.67 14.65 -19.24 -0.28 -7.95 16 25 O -0.49 -5.22 13.25 -40.59 -0.54 -5.76 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.39 7.16 8.56 -40.82 -0.35 6.81 16 33 H 0.42 6.38 6.32 -40.82 -0.26 6.12 16 34 H 0.16 2.41 6.65 -52.48 -0.35 2.07 16 35 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.41 2.23 9.11 45.56 0.42 2.65 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -31.80 315.75 -6.74 -38.54 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.18 Total: 13.91 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -2.71 Total: 9.33 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.16 Total: -55.49 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.76 Total: -26.50 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.80 -6.74 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.002 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds