Wall clock time and date at job start Tue Mar 31 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 H 1.09004 * 109.47032 * 54.99730 * 3 2 1 5 5 C 1.50699 * 109.47183 * 174.99953 * 3 2 1 6 6 H 1.08001 * 120.00006 * 120.00288 * 5 3 2 7 7 C 1.37874 * 119.99823 * 299.99979 * 5 3 2 8 8 N 1.31509 * 120.00298 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47014 * 89.99908 * 9 7 5 11 11 H 1.48503 * 109.47512 * 210.00246 * 9 7 5 12 12 H 1.48507 * 109.47163 * 330.00309 * 9 7 5 13 13 N 1.46504 * 109.47414 * 295.00393 * 3 2 1 14 14 C 1.34769 * 120.00479 * 84.99516 * 13 3 2 15 15 O 1.21586 * 119.99798 * 0.02562 * 14 13 3 16 16 N 1.34775 * 120.00168 * 180.02562 * 14 13 3 17 17 C 1.39226 * 119.99769 * 185.60417 * 16 14 13 18 18 C 1.39502 * 120.55846 * 25.08371 * 17 16 14 19 19 C 1.38249 * 118.42743 * 179.97438 * 18 17 16 20 20 C 1.38824 * 119.47004 * 0.02562 * 19 18 17 21 21 N 1.31345 * 121.10727 * 359.97438 * 20 19 18 22 22 C 1.32898 * 121.70898 * 0.02562 * 21 20 19 23 23 C 1.47667 * 119.80060 * 180.02562 * 22 21 20 24 24 O 1.21482 * 120.00516 * 185.31617 * 23 22 21 25 25 O 1.34733 * 120.00305 * 5.31407 * 23 22 21 26 26 H 1.08997 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47003 * 299.99780 * 1 2 3 28 28 H 1.08992 * 109.47006 * 59.99860 * 1 2 3 29 29 H 1.08997 * 109.47003 * 240.00220 * 2 1 3 30 30 H 1.09002 * 109.46946 * 120.00173 * 2 1 3 31 31 H 0.97000 * 120.00029 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99066 * 265.00289 * 13 3 2 33 33 H 0.96994 * 120.00065 * 5.60480 * 16 14 13 34 34 H 1.08001 * 120.78806 * 359.95396 * 18 17 16 35 35 H 1.08000 * 120.26323 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.44432 * 179.72019 * 20 19 18 37 37 H 0.96705 * 117.00617 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8801 1.3812 10 1 6.4427 2.1130 2.0837 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8396 0.0270 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3412 2.6325 -0.4318 16 7 0.0784 3.2666 -2.5187 17 6 -1.1303 3.9527 -2.6002 18 6 -1.7266 4.4776 -1.4534 19 6 -2.9266 5.1514 -1.5852 20 6 -3.5001 5.2855 -2.8422 21 7 -2.9216 4.7833 -3.9091 22 6 -1.7681 4.1274 -3.8349 23 6 -1.1545 3.5806 -5.0617 24 8 -0.1521 2.8984 -4.9875 25 8 -1.7065 3.8381 -6.2635 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0611 2.9498 32 1 2.2720 2.1232 -1.9977 33 1 0.6637 3.2219 -3.2908 34 1 -1.2620 4.3601 -0.4856 35 1 -3.4143 5.5693 -0.7169 36 1 -4.4398 5.8080 -2.9441 37 1 -1.2694 3.4582 -7.0380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589464770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:03 Heat of formation + Delta-G solvation = -74.688756 kcal Electronic energy + Delta-G solvation = -23530.136719 eV Core-core repulsion = 19887.057095 eV Total energy + Delta-G solvation = -3643.079625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26792 -39.80562 -39.10838 -36.48401 -35.66889 -34.40550 -32.69395 -32.25990 -31.15540 -29.81312 -26.98214 -25.35429 -23.97208 -22.91975 -21.92229 -20.82551 -19.62738 -18.51911 -18.35071 -17.66496 -17.55222 -16.21148 -16.10138 -15.79268 -15.24161 -15.07653 -14.78217 -14.28076 -13.85512 -13.63385 -13.52517 -13.10509 -12.71236 -12.66037 -12.40093 -11.74740 -11.65885 -11.30319 -11.05944 -11.00207 -10.89338 -10.76148 -10.38686 -10.24426 -10.02899 -9.81488 -9.63325 -9.30613 -9.09742 -8.55904 -8.31990 -7.87741 -6.17394 -4.26925 0.41138 1.19182 2.28201 2.71616 2.98573 3.22039 3.29197 3.31445 3.49401 3.88495 4.19763 4.28099 4.65345 4.73650 4.89382 5.00701 5.14561 5.28902 5.32937 5.89279 6.12197 6.15702 6.28878 6.36829 6.43594 6.61678 6.75022 6.93243 7.06274 7.26932 7.28871 7.36055 7.50767 7.59726 7.79000 7.82777 7.89217 8.12333 8.62662 8.74118 9.07751 9.40543 10.87969 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.003958 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.629030 B = 7072.335494 C = 7553.970061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.285 3.715 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.710 5.710 14 C 0.691 3.309 15 O -0.575 6.575 16 N -0.675 5.675 17 C 0.219 3.781 18 C -0.105 4.105 19 C -0.110 4.110 20 C 0.059 3.941 21 N -0.412 5.412 22 C 0.017 3.983 23 C 0.551 3.449 24 O -0.515 6.515 25 O -0.492 6.492 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.418 0.582 34 H 0.173 0.827 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 8.381 -11.219 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C 0.184 3.816 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.360 5.360 14 C 0.391 3.609 15 O -0.453 6.453 16 N -0.326 5.326 17 C 0.114 3.886 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.106 4.106 21 N -0.123 5.123 22 C -0.121 4.121 23 C 0.395 3.605 24 O -0.404 6.404 25 O -0.301 6.301 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.262 0.738 34 H 0.190 0.810 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -10.800 8.182 -10.627 17.220 hybrid contribution 2.162 -0.475 -0.326 2.238 sum -8.638 7.707 -10.953 15.937 Atomic orbital electron populations 1.21818 0.98280 0.98066 1.01164 1.21973 0.92696 0.99776 1.02423 1.18800 0.94217 0.88992 0.79629 0.93005 1.21207 0.90507 1.39295 1.06427 0.92002 1.24863 0.98693 0.94668 0.95319 1.69887 1.35206 1.37439 1.09317 0.86433 0.84676 0.77670 0.78230 1.20542 1.21030 1.19833 1.45909 1.12711 1.57875 1.19480 1.16157 0.83877 0.78880 0.81954 1.90851 1.51564 1.64483 1.38390 1.43373 1.19492 1.53238 1.16473 1.18445 0.86566 0.90269 0.93320 1.22118 0.96183 0.95174 0.99828 1.22428 0.95116 0.96285 0.99249 1.22693 1.00445 0.99882 0.87588 1.67519 1.06392 1.05346 1.33047 1.19439 0.95234 1.07892 0.89494 1.20375 0.80580 0.76213 0.83300 1.90747 1.25451 1.37401 1.86821 1.84688 1.57358 1.71651 1.16419 0.95860 0.93070 0.94445 0.94941 0.88092 0.92480 0.77823 0.73828 0.81031 0.83713 0.81910 0.73062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.29 6.99 2.24 -69.08 -0.15 6.83 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.49 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.71 -14.57 5.03 -59.81 -0.30 -14.87 16 14 C 0.69 13.61 6.94 -86.93 -0.60 13.01 16 15 O -0.57 -12.54 10.69 5.29 0.06 -12.48 16 16 N -0.67 -11.13 4.86 -13.95 -0.07 -11.20 16 17 C 0.22 3.37 6.44 -83.35 -0.54 2.83 16 18 C -0.10 -1.49 8.81 -39.11 -0.34 -1.84 16 19 C -0.11 -1.17 10.10 -39.36 -0.40 -1.57 16 20 C 0.06 0.62 11.17 -17.54 -0.20 0.42 16 21 N -0.41 -5.46 10.12 -9.70 -0.10 -5.55 16 22 C 0.02 0.25 6.76 -82.87 -0.56 -0.32 16 23 C 0.55 7.34 8.30 34.58 0.29 7.63 16 24 O -0.52 -7.57 14.58 -19.25 -0.28 -7.85 16 25 O -0.49 -5.05 13.25 -40.58 -0.54 -5.59 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 28 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.39 7.13 8.56 -40.82 -0.35 6.78 16 33 H 0.42 6.42 6.02 -40.82 -0.25 6.18 16 34 H 0.17 2.75 5.92 -52.49 -0.31 2.44 16 35 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.41 2.08 9.11 45.56 0.42 2.49 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -31.17 314.50 -6.74 -37.91 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -3.13 Total: 14.57 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -2.73 Total: 8.58 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.16 Total: -55.11 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.76 Total: -25.93 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.17 -6.74 -37.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.781 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds