Wall clock time and date at job start Tue Mar 31 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 H 1.09004 * 109.47032 * 54.99730 * 3 2 1 5 5 C 1.50699 * 109.47183 * 174.99953 * 3 2 1 6 6 H 1.08001 * 120.00006 * 120.00288 * 5 3 2 7 7 C 1.37874 * 119.99823 * 299.99979 * 5 3 2 8 8 N 1.31509 * 120.00298 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47014 * 89.99908 * 9 7 5 11 11 H 1.48503 * 109.47512 * 210.00246 * 9 7 5 12 12 H 1.48507 * 109.47163 * 330.00309 * 9 7 5 13 13 N 1.46504 * 109.47414 * 295.00393 * 3 2 1 14 14 C 1.34769 * 120.00479 * 84.99516 * 13 3 2 15 15 O 1.21586 * 119.99798 * 0.02562 * 14 13 3 16 16 N 1.34775 * 120.00168 * 180.02562 * 14 13 3 17 17 C 1.39226 * 119.99769 * 185.60417 * 16 14 13 18 18 C 1.39502 * 120.55846 * 25.08371 * 17 16 14 19 19 C 1.38249 * 118.42743 * 179.97438 * 18 17 16 20 20 C 1.38824 * 119.47004 * 0.02562 * 19 18 17 21 21 N 1.31345 * 121.10727 * 359.97438 * 20 19 18 22 22 C 1.32898 * 121.70898 * 0.02562 * 21 20 19 23 23 C 1.47667 * 119.80060 * 180.02562 * 22 21 20 24 24 O 1.21482 * 120.00516 * 185.31617 * 23 22 21 25 25 O 1.34733 * 120.00305 * 5.31407 * 23 22 21 26 26 H 1.08997 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47003 * 299.99780 * 1 2 3 28 28 H 1.08992 * 109.47006 * 59.99860 * 1 2 3 29 29 H 1.08997 * 109.47003 * 240.00220 * 2 1 3 30 30 H 1.09002 * 109.46946 * 120.00173 * 2 1 3 31 31 H 0.97000 * 120.00029 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99066 * 265.00289 * 13 3 2 33 33 H 0.96994 * 120.00065 * 5.60480 * 16 14 13 34 34 H 1.08001 * 120.78806 * 359.95396 * 18 17 16 35 35 H 1.08000 * 120.26323 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.44432 * 179.72019 * 20 19 18 37 37 H 0.96705 * 117.00617 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8801 1.3812 10 1 6.4427 2.1130 2.0837 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8396 0.0270 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3412 2.6325 -0.4318 16 7 0.0784 3.2666 -2.5187 17 6 -1.1303 3.9527 -2.6002 18 6 -1.7266 4.4776 -1.4534 19 6 -2.9266 5.1514 -1.5852 20 6 -3.5001 5.2855 -2.8422 21 7 -2.9216 4.7833 -3.9091 22 6 -1.7681 4.1274 -3.8349 23 6 -1.1545 3.5806 -5.0617 24 8 -0.1521 2.8984 -4.9875 25 8 -1.7065 3.8381 -6.2635 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0611 2.9498 32 1 2.2720 2.1232 -1.9977 33 1 0.6637 3.2219 -3.2908 34 1 -1.2620 4.3601 -0.4856 35 1 -3.4143 5.5693 -0.7169 36 1 -4.4398 5.8080 -2.9441 37 1 -1.2694 3.4582 -7.0380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589464770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:02 Heat of formation + Delta-G solvation = -98.054616 kcal Electronic energy + Delta-G solvation = -23531.149939 eV Core-core repulsion = 19887.057095 eV Total energy + Delta-G solvation = -3644.092844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.40440 -41.06146 -40.24316 -37.65186 -37.13236 -35.84607 -34.43644 -33.39028 -32.86631 -31.09846 -28.86008 -26.37126 -25.39305 -24.57099 -22.92575 -22.36875 -21.42617 -19.91395 -19.43695 -18.92884 -18.57870 -17.92117 -17.36888 -16.96114 -16.80516 -16.37232 -16.10845 -15.82453 -15.18553 -14.94881 -14.64374 -14.52515 -14.22367 -14.12195 -13.56803 -13.54274 -13.19502 -12.87649 -12.70479 -12.67097 -12.27385 -12.19034 -12.09283 -11.88464 -11.59828 -11.37794 -11.07264 -10.81026 -10.55305 -10.50774 -9.82181 -9.32676 -8.17080 -6.33893 -0.60416 0.15832 1.29506 1.44784 1.45688 1.54777 1.60813 1.84895 2.08138 2.41612 2.78155 3.12626 3.26962 3.31306 3.68988 3.87834 4.06145 4.29543 4.48194 4.48297 4.55117 4.72493 4.86314 5.02888 5.12753 5.20345 5.22861 5.36155 5.41502 5.50007 5.58829 5.65106 5.68106 5.82761 6.12728 6.17108 6.62409 6.72323 6.93744 7.07883 7.32829 7.55131 8.88371 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.003958 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.629030 B = 7072.335494 C = 7553.970061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 C 0.296 3.704 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.264 1.264 13 N -0.711 5.711 14 C 0.693 3.307 15 O -0.600 6.600 16 N -0.667 5.667 17 C 0.190 3.810 18 C -0.125 4.125 19 C -0.091 4.091 20 C 0.072 3.928 21 N -0.425 5.425 22 C 0.010 3.990 23 C 0.553 3.447 24 O -0.536 6.536 25 O -0.485 6.485 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.266 0.734 32 H 0.400 0.600 33 H 0.422 0.578 34 H 0.149 0.851 35 H 0.183 0.817 36 H 0.209 0.791 37 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.976 9.417 -12.639 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.162 4.162 3 C 0.193 3.807 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.188 1.188 13 N -0.362 5.362 14 C 0.394 3.606 15 O -0.480 6.480 16 N -0.319 5.319 17 C 0.086 3.914 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.092 4.092 21 N -0.136 5.136 22 C -0.126 4.126 23 C 0.397 3.603 24 O -0.427 6.427 25 O -0.297 6.297 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.235 0.765 33 H 0.267 0.733 34 H 0.166 0.834 35 H 0.200 0.800 36 H 0.225 0.775 37 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -11.755 9.250 -12.132 19.259 hybrid contribution 2.259 -0.675 0.062 2.358 sum -9.496 8.575 -12.070 17.589 Atomic orbital electron populations 1.21641 0.96963 0.99005 1.00175 1.21831 0.93770 0.99290 1.01334 1.18364 0.93616 0.88854 0.79895 0.97304 1.21535 0.91264 1.39257 1.06804 0.91238 1.25696 1.03153 0.94242 0.94955 1.70025 1.37018 1.38122 1.09801 0.85389 0.79221 0.77498 0.78471 1.20318 1.20887 1.18799 1.45569 1.13592 1.58342 1.18710 1.16165 0.83241 0.78686 0.82527 1.90835 1.52175 1.65346 1.39616 1.43074 1.20300 1.53249 1.15256 1.18674 0.86587 0.91643 0.94469 1.22077 0.97842 0.96749 0.98620 1.22828 0.93234 0.94135 1.00918 1.23489 1.01124 0.97980 0.86633 1.67630 1.05991 1.05774 1.34207 1.19562 0.95626 1.08027 0.89433 1.20299 0.80221 0.75792 0.83944 1.90731 1.26343 1.38376 1.87210 1.84633 1.57203 1.71409 1.16425 0.93827 0.94851 0.94528 0.94443 0.90515 0.92478 0.76548 0.73317 0.83359 0.79971 0.77481 0.70428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.86 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.91 16 3 C 0.30 14.99 2.24 44.24 0.10 15.09 16 4 H 0.01 0.53 7.58 -2.38 -0.02 0.52 16 5 C -0.55 -28.82 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.07 5.29 84.65 0.45 1.51 16 8 N -0.91 -51.06 11.29 21.45 0.24 -50.82 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.71 -29.97 5.03 -461.42 -2.32 -32.29 16 14 C 0.69 28.15 6.94 179.06 1.24 29.39 16 15 O -0.60 -27.22 10.69 -3.99 -0.04 -27.26 16 16 N -0.67 -22.41 4.86 -316.33 -1.54 -23.95 16 17 C 0.19 5.82 6.44 38.72 0.25 6.07 16 18 C -0.12 -3.51 8.81 22.58 0.20 -3.31 16 19 C -0.09 -1.69 10.10 22.41 0.23 -1.47 16 20 C 0.07 1.26 11.17 84.91 0.95 2.21 16 21 N -0.43 -10.19 10.12 -184.59 -1.87 -12.06 16 22 C 0.01 0.28 6.76 41.92 0.28 0.57 16 23 C 0.55 14.15 8.30 70.31 0.58 14.73 16 24 O -0.54 -15.49 14.58 19.89 0.29 -15.20 16 25 O -0.48 -9.01 13.25 -56.44 -0.75 -9.76 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.59 7.84 -2.39 -0.02 1.58 16 28 H 0.04 1.64 5.64 -2.39 -0.01 1.63 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 4.19 5.95 -2.39 -0.01 4.17 16 31 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.40 14.88 8.56 -92.71 -0.79 14.09 16 33 H 0.42 13.17 6.02 -92.71 -0.56 12.62 16 34 H 0.15 4.92 5.92 -2.91 -0.02 4.90 16 35 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.43 3.45 9.11 -74.05 -0.67 2.77 16 Total: -1.00 -69.04 314.50 0.46 -68.57 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.87 Total: 33.69 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 5.28 Total: 25.44 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -5.48 Total: -119.12 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.50 Total: -52.23 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -69.04 0.46 -68.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.481 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds