Wall clock time and date at job start Tue Mar 31 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47429 * 2 1 4 4 H 1.08995 * 109.47604 * 54.99790 * 3 2 1 5 5 N 1.46505 * 109.47161 * 294.99651 * 3 2 1 6 6 C 1.34771 * 119.99564 * 84.99886 * 5 3 2 7 7 O 1.21574 * 120.00596 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00042 * 180.02562 * 6 5 3 9 9 C 1.39241 * 120.00459 * 174.85557 * 8 6 5 10 10 C 1.39688 * 119.57734 * 185.72951 * 9 8 6 11 11 C 1.38643 * 119.49632 * 179.97438 * 10 9 8 12 12 C 1.38351 * 118.67105 * 359.97438 * 11 10 9 13 13 C 1.40569 * 119.13304 * 0.02562 * 12 11 10 14 14 C 1.41338 * 119.78963 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00110 * 5.70461 * 14 13 12 16 16 C 1.40022 * 119.99945 * 185.71356 * 14 13 12 17 17 N 1.30746 * 120.00092 * 354.91589 * 16 14 13 18 18 Si 1.86800 * 119.99974 * 174.91938 * 16 14 13 19 19 H 1.48501 * 109.47195 * 94.99862 * 18 16 14 20 20 H 1.48502 * 109.47086 * 214.99500 * 18 16 14 21 21 H 1.48501 * 109.46964 * 334.99148 * 18 16 14 22 22 N 1.31908 * 119.57405 * 5.44672 * 9 8 6 23 23 C 1.50698 * 109.47568 * 174.99887 * 3 2 1 24 24 O 1.20829 * 120.00149 * 119.99597 * 23 3 2 25 25 O 1.34233 * 120.00099 * 300.00129 * 23 3 2 26 26 H 1.09004 * 109.47004 * 300.00516 * 1 2 3 27 27 H 1.09003 * 109.46822 * 60.00192 * 1 2 3 28 28 H 1.08992 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47126 * 239.99781 * 2 1 3 30 30 H 1.09003 * 109.46822 * 119.99807 * 2 1 3 31 31 H 0.96997 * 120.00236 * 265.00169 * 5 3 2 32 32 H 0.97003 * 119.99615 * 354.84604 * 8 6 5 33 33 H 1.07994 * 120.25138 * 359.95207 * 10 9 8 34 34 H 1.08005 * 120.66560 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.43436 * 179.97438 * 12 11 10 36 36 H 0.97003 * 120.00192 * 180.02562 * 17 16 14 37 37 H 0.96699 * 117.00164 * 179.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6526 2.0974 -1.2519 6 6 0.4353 2.6643 -1.3670 7 8 -0.3410 2.6326 -0.4320 8 7 0.0786 3.2665 -2.5188 9 6 -1.2148 3.7576 -2.6763 10 6 -1.6115 4.2712 -3.9132 11 6 -2.8999 4.7592 -4.0683 12 6 -3.7590 4.7213 -2.9845 13 6 -3.3002 4.1920 -1.7657 14 6 -4.1662 4.1461 -0.6498 15 1 -5.2025 4.4304 -0.7583 16 6 -3.6808 3.7320 0.5966 17 7 -2.4540 3.2936 0.7076 18 14 -4.7858 3.8059 2.1009 19 1 -5.4284 2.4833 2.3086 20 1 -3.9742 4.1548 3.2946 21 1 -5.8331 4.8385 1.8954 22 7 -2.0515 3.7266 -1.6570 23 6 3.5419 1.4443 0.1239 24 8 4.2192 1.9416 -0.7445 25 8 4.1274 0.8933 1.1988 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2721 2.1230 -1.9978 32 1 0.7230 3.3579 -3.2381 33 1 -0.9197 4.2883 -4.7424 34 1 -3.2267 5.1603 -5.0164 35 1 -4.7687 5.0943 -3.0734 36 1 -2.1178 3.0064 1.5709 37 1 5.0935 0.9182 1.2336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593619243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:33 Heat of formation + Delta-G solvation = -56.692764 kcal Electronic energy + Delta-G solvation = -23938.993063 eV Core-core repulsion = 20296.693803 eV Total energy + Delta-G solvation = -3642.299260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70169 -39.43798 -37.83094 -36.35371 -35.33990 -33.91784 -33.00794 -31.80591 -30.26486 -28.97449 -27.50663 -25.45998 -22.58516 -22.38480 -21.31782 -20.65661 -19.86665 -18.49565 -17.92473 -17.52053 -16.44784 -15.92459 -15.91136 -15.15109 -14.87859 -14.56935 -14.39625 -13.75972 -13.55407 -13.27281 -13.16467 -12.80333 -12.42492 -12.01851 -11.93850 -11.87167 -11.71053 -11.21284 -11.15323 -10.92747 -10.63367 -10.61182 -10.53533 -10.44656 -9.91909 -9.67627 -9.14516 -9.01025 -8.57102 -7.93076 -7.20783 -6.92951 -6.10809 -4.36378 2.00206 2.55774 2.85495 3.13895 3.19037 3.21269 3.29389 3.36929 4.08732 4.15252 4.66681 4.88270 4.97423 5.06885 5.16344 5.54236 5.73355 5.95371 6.06676 6.11303 6.21902 6.27336 6.47542 6.49450 6.61384 6.75821 6.82392 6.87337 6.95434 7.25462 7.34640 7.63384 7.67468 7.74722 7.83917 8.18537 8.30825 8.63282 8.81245 9.08295 9.52810 10.27705 10.50899 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.005633 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.841140 B = 4969.827540 C = 6377.011645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.181 3.819 4 H 0.128 0.872 5 N -0.747 5.747 6 C 0.669 3.331 7 O -0.454 6.454 8 N -0.670 5.670 9 C 0.386 3.614 10 C -0.356 4.356 11 C -0.036 4.036 12 C -0.306 4.306 13 C 0.272 3.728 14 C -0.426 4.426 15 H 0.081 0.919 16 C 0.059 3.941 17 N -0.649 5.649 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.264 1.264 22 N -0.469 5.469 23 C 0.479 3.521 24 O -0.515 6.515 25 O -0.510 6.510 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.394 0.606 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.270 0.730 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.869 -5.952 0.587 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.073 3.927 4 H 0.146 0.854 5 N -0.410 5.410 6 C 0.368 3.632 7 O -0.317 6.317 8 N -0.319 5.319 9 C 0.147 3.853 10 C -0.383 4.383 11 C -0.060 4.060 12 C -0.329 4.329 13 C 0.147 3.853 14 C -0.456 4.456 15 H 0.099 0.901 16 C -0.171 4.171 17 N -0.267 5.267 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.188 1.188 22 N -0.188 5.188 23 C 0.321 3.679 24 O -0.403 6.403 25 O -0.321 6.321 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.228 0.772 32 H 0.229 0.771 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 10.290 -6.312 2.266 12.283 hybrid contribution 0.757 0.518 -0.997 1.355 sum 11.047 -5.794 1.269 12.538 Atomic orbital electron populations 1.21773 0.92561 1.00524 1.04963 1.21930 0.98931 0.93124 1.02336 1.20099 0.85267 0.96600 0.90705 0.85445 1.45084 1.17523 1.63122 1.15280 1.16235 0.81905 0.80240 0.84866 1.91402 1.47626 1.57541 1.35155 1.42502 1.12278 1.60488 1.16606 1.18321 0.84522 0.91851 0.90631 1.20441 0.98882 1.22106 0.96827 1.20543 0.92959 0.95809 0.96697 1.21628 1.00085 1.15324 0.95884 1.18374 0.88386 0.87513 0.91033 1.19553 0.96512 1.37390 0.92168 0.90075 1.26150 0.95526 0.95267 1.00123 1.70348 1.12184 1.19937 1.24281 0.86551 0.80995 0.79250 0.81456 1.19802 1.20363 1.18791 1.68679 1.02925 1.21734 1.25446 1.23740 0.92334 0.73334 0.78499 1.90702 1.65751 1.42832 1.40999 1.84533 1.28728 1.74177 1.44673 0.91268 0.91164 0.93864 0.91942 0.90473 0.77152 0.77064 0.89158 0.88661 0.88629 0.91781 0.73110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.51 37.16 0.32 -1.91 16 2 C -0.12 -1.55 5.57 -26.73 -0.15 -1.70 16 3 C 0.18 2.45 2.77 -69.08 -0.19 2.26 16 4 H 0.13 1.91 7.58 -51.93 -0.39 1.51 16 5 N -0.75 -11.29 4.91 -59.82 -0.29 -11.58 16 6 C 0.67 13.15 7.09 -86.92 -0.62 12.53 16 7 O -0.45 -10.59 9.30 5.30 0.05 -10.54 16 8 N -0.67 -13.15 5.39 -15.79 -0.09 -13.24 16 9 C 0.39 9.31 7.43 -155.00 -1.15 8.16 16 10 C -0.36 -7.98 9.96 -38.89 -0.39 -8.36 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.31 -7.67 9.83 -38.66 -0.38 -8.05 16 13 C 0.27 7.55 6.54 -85.00 -0.56 7.00 16 14 C -0.43 -11.57 9.13 -37.74 -0.34 -11.92 16 15 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 16 C 0.06 1.52 5.49 -17.35 -0.10 1.42 16 17 N -0.65 -17.35 9.07 55.55 0.50 -16.85 16 18 Si 0.89 19.01 29.56 -169.99 -5.03 13.99 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 N -0.47 -12.88 5.74 -10.26 -0.06 -12.94 16 23 C 0.48 5.73 7.69 36.00 0.28 6.01 16 24 O -0.51 -7.29 16.60 -18.75 -0.31 -7.60 16 25 O -0.51 -4.52 13.23 -39.27 -0.52 -5.04 16 26 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.07 1.35 5.65 -51.93 -0.29 1.06 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.82 8.00 -51.93 -0.42 0.41 16 31 H 0.39 5.27 7.81 -40.82 -0.32 4.96 16 32 H 0.40 6.16 8.72 -40.82 -0.36 5.80 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 36 H 0.27 6.76 8.29 -40.82 -0.34 6.42 16 37 H 0.41 1.78 9.10 45.56 0.41 2.19 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -32.82 316.58 -8.08 -40.89 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -3.43 Total: 13.91 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.68 Total: 4.23 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.07 Total: -54.61 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.78 Total: -23.18 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.82 -8.08 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593619243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.800 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds