Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47429 * 2 1 4 4 H 1.08995 * 109.47604 * 54.99790 * 3 2 1 5 5 N 1.46505 * 109.47161 * 294.99651 * 3 2 1 6 6 C 1.34771 * 119.99564 * 84.99886 * 5 3 2 7 7 O 1.21574 * 120.00596 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00042 * 180.02562 * 6 5 3 9 9 C 1.39241 * 120.00459 * 174.85557 * 8 6 5 10 10 C 1.39688 * 119.57734 * 185.72951 * 9 8 6 11 11 C 1.38643 * 119.49632 * 179.97438 * 10 9 8 12 12 C 1.38351 * 118.67105 * 359.97438 * 11 10 9 13 13 C 1.40569 * 119.13304 * 0.02562 * 12 11 10 14 14 C 1.41338 * 119.78963 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00110 * 5.70461 * 14 13 12 16 16 C 1.40022 * 119.99945 * 185.71356 * 14 13 12 17 17 N 1.30746 * 120.00092 * 354.91589 * 16 14 13 18 18 Si 1.86800 * 119.99974 * 174.91938 * 16 14 13 19 19 H 1.48501 * 109.47195 * 94.99862 * 18 16 14 20 20 H 1.48502 * 109.47086 * 214.99500 * 18 16 14 21 21 H 1.48501 * 109.46964 * 334.99148 * 18 16 14 22 22 N 1.31908 * 119.57405 * 5.44672 * 9 8 6 23 23 C 1.50698 * 109.47568 * 174.99887 * 3 2 1 24 24 O 1.20829 * 120.00149 * 119.99597 * 23 3 2 25 25 O 1.34233 * 120.00099 * 300.00129 * 23 3 2 26 26 H 1.09004 * 109.47004 * 300.00516 * 1 2 3 27 27 H 1.09003 * 109.46822 * 60.00192 * 1 2 3 28 28 H 1.08992 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47126 * 239.99781 * 2 1 3 30 30 H 1.09003 * 109.46822 * 119.99807 * 2 1 3 31 31 H 0.96997 * 120.00236 * 265.00169 * 5 3 2 32 32 H 0.97003 * 119.99615 * 354.84604 * 8 6 5 33 33 H 1.07994 * 120.25138 * 359.95207 * 10 9 8 34 34 H 1.08005 * 120.66560 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.43436 * 179.97438 * 12 11 10 36 36 H 0.97003 * 120.00192 * 180.02562 * 17 16 14 37 37 H 0.96699 * 117.00164 * 179.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6526 2.0974 -1.2519 6 6 0.4353 2.6643 -1.3670 7 8 -0.3410 2.6326 -0.4320 8 7 0.0786 3.2665 -2.5188 9 6 -1.2148 3.7576 -2.6763 10 6 -1.6115 4.2712 -3.9132 11 6 -2.8999 4.7592 -4.0683 12 6 -3.7590 4.7213 -2.9845 13 6 -3.3002 4.1920 -1.7657 14 6 -4.1662 4.1461 -0.6498 15 1 -5.2025 4.4304 -0.7583 16 6 -3.6808 3.7320 0.5966 17 7 -2.4540 3.2936 0.7076 18 14 -4.7858 3.8059 2.1009 19 1 -5.4284 2.4833 2.3086 20 1 -3.9742 4.1548 3.2946 21 1 -5.8331 4.8385 1.8954 22 7 -2.0515 3.7266 -1.6570 23 6 3.5419 1.4443 0.1239 24 8 4.2192 1.9416 -0.7445 25 8 4.1274 0.8933 1.1988 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2721 2.1230 -1.9978 32 1 0.7230 3.3579 -3.2381 33 1 -0.9197 4.2883 -4.7424 34 1 -3.2267 5.1603 -5.0164 35 1 -4.7687 5.0943 -3.0734 36 1 -2.1178 3.0064 1.5709 37 1 5.0935 0.9182 1.2336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593619243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -80.044058 kcal Electronic energy + Delta-G solvation = -23940.005651 eV Core-core repulsion = 20296.693803 eV Total energy + Delta-G solvation = -3643.311848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79636 -40.89200 -39.52910 -37.27361 -36.67397 -35.64020 -34.79505 -33.14693 -32.14558 -30.73074 -28.78387 -27.33481 -24.10253 -23.55127 -23.11938 -22.01028 -21.28223 -19.95094 -19.25382 -18.84645 -18.07795 -17.29621 -16.99864 -16.53048 -16.24847 -16.20382 -16.12538 -15.53080 -14.78096 -14.73457 -14.57371 -14.51133 -13.83548 -13.66183 -13.49456 -12.98879 -12.86065 -12.69350 -12.64549 -12.51688 -12.42714 -12.27471 -11.83764 -11.73659 -11.57870 -11.41927 -10.81675 -10.78946 -9.94047 -9.82452 -9.07405 -8.75000 -7.98847 -6.35221 1.00264 1.04816 1.31582 1.43344 1.43811 1.53437 1.57615 2.18650 2.30683 2.58709 3.07344 3.30959 3.84652 4.01002 4.11540 4.15683 4.38201 4.45237 4.60812 4.76911 4.88680 4.89263 5.00402 5.02736 5.09227 5.17350 5.32844 5.47173 5.57077 5.61810 5.70095 5.87591 5.96403 6.04260 6.32603 6.45395 6.86305 6.89988 7.11658 7.21308 7.99457 8.40858 8.62677 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.005633 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.841140 B = 4969.827540 C = 6377.011645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 C 0.176 3.824 4 H 0.111 0.889 5 N -0.731 5.731 6 C 0.665 3.335 7 O -0.491 6.491 8 N -0.662 5.662 9 C 0.367 3.633 10 C -0.348 4.348 11 C -0.034 4.034 12 C -0.332 4.332 13 C 0.239 3.761 14 C -0.466 4.466 15 H 0.082 0.918 16 C 0.014 3.986 17 N -0.678 5.678 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.260 1.260 22 N -0.499 5.499 23 C 0.496 3.504 24 O -0.537 6.537 25 O -0.498 6.498 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.405 0.595 32 H 0.415 0.585 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.270 0.730 37 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.432 -6.577 0.256 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.151 4.151 3 C 0.068 3.932 4 H 0.128 0.872 5 N -0.393 5.393 6 C 0.363 3.637 7 O -0.357 6.357 8 N -0.312 5.312 9 C 0.127 3.873 10 C -0.373 4.373 11 C -0.058 4.058 12 C -0.355 4.355 13 C 0.114 3.886 14 C -0.497 4.497 15 H 0.100 0.900 16 C -0.212 4.212 17 N -0.296 5.296 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.183 1.183 22 N -0.219 5.219 23 C 0.338 3.662 24 O -0.427 6.427 25 O -0.312 6.312 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.242 0.758 32 H 0.252 0.748 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 11.940 -6.958 1.908 13.951 hybrid contribution 0.399 0.684 -1.003 1.278 sum 12.339 -6.274 0.904 13.872 Atomic orbital electron populations 1.21612 0.95182 1.00302 1.01829 1.21845 0.96206 0.92704 1.04310 1.20143 0.86940 0.96847 0.89228 0.87168 1.44797 1.16096 1.62085 1.16352 1.16402 0.82750 0.80159 0.84362 1.91400 1.49126 1.58809 1.36404 1.42370 1.11335 1.60070 1.17462 1.18789 0.85646 0.91950 0.90919 1.20895 0.99423 1.19870 0.97131 1.20994 0.92626 0.94668 0.97508 1.21799 1.01108 1.16399 0.96151 1.18840 0.89133 0.88321 0.92353 1.19843 0.96844 1.39548 0.93421 0.89993 1.26923 0.97026 0.94592 1.02656 1.70518 1.13722 1.20624 1.24769 0.85399 0.78893 0.79301 0.77344 1.19246 1.19829 1.18343 1.68650 1.03353 1.22604 1.27258 1.23116 0.91250 0.73061 0.78779 1.90707 1.65976 1.43987 1.42026 1.84467 1.30877 1.73035 1.42802 0.93777 0.94897 0.92519 0.90424 0.87839 0.75833 0.74782 0.85362 0.84741 0.87978 0.91912 0.70338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 8.51 71.98 0.61 -3.61 16 2 C -0.11 -2.61 5.57 30.59 0.17 -2.44 16 3 C 0.18 4.59 2.77 44.24 0.12 4.71 16 4 H 0.11 3.33 7.58 -2.39 -0.02 3.32 16 5 N -0.73 -21.62 4.91 -461.44 -2.26 -23.88 16 6 C 0.66 26.46 7.09 179.06 1.27 27.73 16 7 O -0.49 -23.83 9.30 -3.95 -0.04 -23.87 16 8 N -0.66 -25.76 5.39 -322.12 -1.74 -27.49 16 9 C 0.37 17.72 7.43 133.26 0.99 18.71 16 10 C -0.35 -14.93 9.96 22.72 0.23 -14.71 16 11 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 12 C -0.33 -16.82 9.83 22.87 0.22 -16.60 16 13 C 0.24 13.74 6.54 40.19 0.26 14.00 16 14 C -0.47 -26.41 9.13 23.47 0.21 -26.19 16 15 H 0.08 4.40 7.85 -2.91 -0.02 4.37 16 16 C 0.01 0.77 5.49 85.29 0.47 1.24 16 17 N -0.68 -37.83 9.07 21.84 0.20 -37.63 16 18 Si 0.97 40.35 29.56 68.60 2.03 42.38 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 N -0.50 -28.27 5.74 -186.36 -1.07 -29.34 16 23 C 0.50 10.74 7.69 71.24 0.55 11.29 16 24 O -0.54 -14.01 16.60 21.95 0.36 -13.65 16 25 O -0.50 -7.26 13.23 -51.45 -0.68 -7.94 16 26 H 0.04 1.61 7.84 -2.38 -0.02 1.59 16 27 H 0.03 1.29 5.65 -2.39 -0.01 1.28 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 1.92 8.00 -2.39 -0.02 1.90 16 31 H 0.41 10.26 7.81 -92.71 -0.72 9.53 16 32 H 0.42 12.28 8.72 -92.71 -0.81 11.47 16 33 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 36 H 0.27 14.14 8.29 -92.71 -0.77 13.38 16 37 H 0.43 2.19 9.10 -74.06 -0.67 1.52 16 Total: -1.00 -74.28 316.58 1.08 -73.20 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -1.06 Total: 35.36 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.34 Total: 12.87 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -4.87 Total: -118.35 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.35 Total: -45.46 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -74.28 1.08 -73.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593619243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.849 kcal (2) G-P(sol) polarization free energy of solvation -74.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds