Wall clock time and date at job start Tue Mar 31 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.47097 * 2 1 4 4 H 1.09006 * 109.47313 * 305.00007 * 3 2 1 5 5 C 1.50694 * 109.47204 * 185.00004 * 3 2 1 6 6 H 1.08002 * 120.00138 * 239.99857 * 5 3 2 7 7 C 1.37876 * 120.00147 * 59.99875 * 5 3 2 8 8 N 1.31521 * 119.99742 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00423 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46940 * 90.00019 * 9 7 5 11 11 H 1.48502 * 109.46921 * 210.00078 * 9 7 5 12 12 H 1.48500 * 109.46747 * 329.99983 * 9 7 5 13 13 N 1.46508 * 109.47144 * 65.00016 * 3 2 1 14 14 C 1.34769 * 119.99796 * 274.99899 * 13 3 2 15 15 O 1.21568 * 120.00534 * 359.97438 * 14 13 3 16 16 N 1.34782 * 119.99830 * 179.97438 * 14 13 3 17 17 C 1.38902 * 119.99944 * 174.89620 * 16 14 13 18 18 C 1.39301 * 119.52684 * 185.11493 * 17 16 14 19 19 C 1.36909 * 119.39109 * 179.76889 * 18 17 16 20 20 C 1.40350 * 118.47519 * 0.49726 * 19 18 17 21 21 C 1.47465 * 120.48353 * 179.76451 * 20 19 18 22 22 O 1.21504 * 120.00137 * 359.97438 * 21 20 19 23 23 O 1.34753 * 119.99805 * 179.97438 * 21 20 19 24 24 C 1.39620 * 119.02585 * 359.74855 * 20 19 18 25 25 N 1.31662 * 120.50548 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46768 * 299.99859 * 1 2 3 27 27 H 1.08997 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47257 * 59.99922 * 1 2 3 29 29 H 1.09001 * 109.46906 * 120.00393 * 2 1 3 30 30 H 1.08994 * 109.46775 * 240.00147 * 2 1 3 31 31 H 0.96998 * 119.99751 * 180.02562 * 8 7 5 32 32 H 0.96993 * 119.99599 * 95.00257 * 13 3 2 33 33 H 0.96996 * 119.99957 * 354.90439 * 16 14 13 34 34 H 1.08000 * 120.29840 * 359.97438 * 18 17 16 35 35 H 1.07998 * 120.76140 * 180.24451 * 19 18 17 36 36 H 0.96693 * 116.99985 * 179.97438 * 23 21 20 37 37 H 1.07994 * 119.74419 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3520 -0.7599 11 1 6.3835 0.9214 -2.8166 12 1 6.5576 2.0719 -0.6889 13 7 1.6525 2.0975 1.2519 14 6 0.4353 2.6643 1.3670 15 8 -0.3410 2.6326 0.4319 16 7 0.0785 3.2665 2.5188 17 6 -1.1321 3.9423 2.6032 18 6 -1.4435 4.6509 3.7614 19 6 -2.6354 5.3199 3.8398 20 6 -3.5111 5.2574 2.7448 21 6 -4.8087 5.9570 2.7837 22 8 -5.1267 6.5930 3.7689 23 8 -5.6417 5.8908 1.7266 24 6 -3.1355 4.5235 1.6180 25 7 -1.9767 3.8994 1.5826 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8293 -0.0610 -2.9499 32 1 2.2720 2.1231 1.9977 33 1 0.6672 3.2280 3.2887 34 1 -0.7495 4.6750 4.5886 35 1 -2.8976 5.8794 4.7255 36 1 -6.4811 6.3653 1.7988 37 1 -3.8006 4.4673 0.7690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:36 Heat of formation + Delta-G solvation = -70.741910 kcal Electronic energy + Delta-G solvation = -22849.754785 eV Core-core repulsion = 19206.846309 eV Total energy + Delta-G solvation = -3642.908476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.03302 -40.06601 -38.89033 -36.27681 -35.63330 -34.37665 -32.73241 -32.38775 -31.16459 -30.10578 -27.03021 -24.90349 -24.03753 -23.04229 -21.84831 -20.72885 -19.57957 -18.71383 -18.17142 -17.95326 -17.38614 -16.18758 -15.85132 -15.66583 -15.39484 -15.05699 -14.68423 -14.16080 -13.91392 -13.81869 -13.37167 -13.18404 -12.84360 -12.67274 -12.29293 -11.79065 -11.60166 -11.27729 -11.01165 -10.96102 -10.88896 -10.63124 -10.35989 -10.20372 -10.08880 -9.89987 -9.60900 -9.08656 -8.89635 -8.53334 -8.40000 -7.84166 -6.15500 -4.25142 0.46074 1.16823 2.39383 2.73627 2.87859 3.22005 3.29500 3.31281 3.57360 4.02917 4.22565 4.33351 4.63693 4.69820 4.70820 5.01221 5.10288 5.16380 5.44838 5.68284 5.90560 6.11554 6.25757 6.40063 6.47133 6.60207 6.65900 6.84451 7.06645 7.24638 7.34733 7.41218 7.60358 7.67542 7.74145 7.86669 8.05807 8.15589 8.67635 8.79958 9.20216 9.43009 10.89817 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034810 B = 0.003065 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.173271 B = 9133.688015 C = 9442.173090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.718 5.718 14 C 0.677 3.323 15 O -0.522 6.522 16 N -0.669 5.669 17 C 0.430 3.570 18 C -0.233 4.233 19 C 0.020 3.980 20 C -0.243 4.243 21 C 0.541 3.459 22 O -0.526 6.526 23 O -0.512 6.512 24 C 0.206 3.794 25 N -0.478 5.478 26 H 0.037 0.963 27 H 0.021 0.979 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.413 0.587 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.907 7.915 11.655 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.370 5.370 14 C 0.376 3.624 15 O -0.393 6.393 16 N -0.315 5.315 17 C 0.195 3.805 18 C -0.257 4.257 19 C -0.005 4.005 20 C -0.249 4.249 21 C 0.386 3.614 22 O -0.416 6.416 23 O -0.323 6.323 24 C 0.044 3.956 25 N -0.192 5.192 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.248 0.752 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.272 0.728 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.888 7.146 9.962 16.397 hybrid contribution 0.849 0.716 1.501 1.867 sum -10.038 7.862 11.463 17.146 Atomic orbital electron populations 1.21818 0.98153 0.97955 1.01364 1.21967 0.92749 0.99794 1.02249 1.18746 0.94039 0.88892 0.79774 0.93115 1.21203 0.90585 1.39227 1.06369 0.92098 1.24877 0.98625 0.94796 0.95340 1.69896 1.35143 1.37410 1.09322 0.86443 0.84792 0.78405 0.77424 1.20555 1.21050 1.19897 1.45905 1.12959 1.58764 1.19416 1.16272 0.84083 0.79652 0.82349 1.91034 1.50716 1.60818 1.36712 1.43217 1.18399 1.53912 1.15983 1.18632 0.85660 0.86831 0.89334 1.21131 1.00278 1.04785 0.99488 1.21065 0.90544 0.92302 0.96637 1.19880 0.95365 1.09999 0.99648 1.20555 0.83952 0.77286 0.79623 1.90875 1.75913 1.41177 1.33661 1.84577 1.32944 1.71384 1.43439 1.23242 0.91020 0.86066 0.95267 1.68059 1.03021 1.21367 1.26796 0.94353 0.95989 0.93006 0.95103 0.88225 0.92491 0.78328 0.75217 0.83831 0.83475 0.72804 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 6.98 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.67 8.73 -34.44 -0.30 -13.97 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.18 11.30 55.43 0.63 -23.56 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.72 -14.02 5.03 -59.82 -0.30 -14.33 16 14 C 0.68 12.97 7.09 -86.92 -0.62 12.36 16 15 O -0.52 -12.04 11.72 5.31 0.06 -11.98 16 16 N -0.67 -9.42 5.38 -15.83 -0.09 -9.50 16 17 C 0.43 6.06 7.41 -154.93 -1.15 4.92 16 18 C -0.23 -2.39 9.86 -39.67 -0.39 -2.78 16 19 C 0.02 0.21 9.65 -39.27 -0.38 -0.17 16 20 C -0.24 -2.82 5.89 -104.83 -0.62 -3.44 16 21 C 0.54 5.95 8.27 34.49 0.29 6.24 16 22 O -0.53 -6.93 17.20 -19.27 -0.33 -7.26 16 23 O -0.51 -4.19 12.70 -40.63 -0.52 -4.70 16 24 C 0.21 2.71 10.79 -17.11 -0.18 2.52 16 25 N -0.48 -7.85 7.85 -12.06 -0.09 -7.94 16 26 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.38 6.30 8.56 -40.82 -0.35 5.95 16 33 H 0.41 4.00 8.71 -40.82 -0.36 3.65 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.15 1.26 7.73 -52.49 -0.41 0.86 16 36 H 0.41 1.45 9.11 45.56 0.42 1.87 16 37 H 0.17 1.96 7.61 -52.49 -0.40 1.56 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -33.76 320.32 -7.57 -41.33 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -3.31 Total: 9.72 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -3.43 Total: 8.26 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.15 Total: -55.32 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.79 Total: -23.94 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.76 -7.57 -41.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.409 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds